Wall clock time and date at job start Tue Mar 31 2020 20:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.48863 * 2 1 4 4 C 1.53041 * 109.48774 * 120.06920 * 2 1 3 5 5 N 1.46963 * 109.36460 * 178.36883 * 4 2 1 6 6 C 1.39668 * 111.00100 * 176.81437 * 5 4 2 7 7 C 1.38941 * 120.07056 * 359.84226 * 6 5 4 8 8 C 1.38088 * 119.95544 * 179.97438 * 7 6 5 9 9 C 1.38295 * 120.08295 * 359.97438 * 8 7 6 10 10 C 1.38379 * 120.13907 * 0.02562 * 9 8 7 11 11 Cl 1.73593 * 119.97737 * 180.02562 * 10 9 8 12 12 C 1.38247 * 120.04865 * 359.97438 * 10 9 8 13 13 C 1.46963 * 110.87696 * 300.67840 * 5 4 2 14 14 C 1.53046 * 109.36367 * 59.31906 * 13 5 4 15 15 N 1.46953 * 109.36740 * 301.60034 * 14 13 5 16 16 C 1.46897 * 111.00211 * 183.18930 * 15 14 13 17 17 C 1.50701 * 109.47105 * 66.04091 * 16 15 14 18 18 O 1.21286 * 120.00178 * 0.02562 * 17 16 15 19 19 N 1.34778 * 120.00057 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00216 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99852 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00184 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99827 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00065 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47306 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47466 * 119.99984 * 24 22 20 27 27 H 1.48501 * 109.47036 * 239.99627 * 24 22 20 28 28 H 1.08999 * 109.47161 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46802 * 300.03868 * 1 2 3 30 30 H 1.08996 * 109.47250 * 60.03808 * 1 2 3 31 31 H 1.08996 * 109.49379 * 58.40375 * 4 2 1 32 32 H 1.09003 * 109.49364 * 298.33140 * 4 2 1 33 33 H 1.08003 * 120.02109 * 359.95989 * 7 6 5 34 34 H 1.07996 * 119.95806 * 180.27646 * 8 7 6 35 35 H 1.07995 * 119.92709 * 179.97438 * 9 8 7 36 36 H 1.07998 * 120.04608 * 179.97438 * 12 10 9 37 37 H 1.08995 * 109.48260 * 179.28776 * 13 5 4 38 38 H 1.08997 * 109.48883 * 299.35292 * 13 5 4 39 39 H 1.09007 * 109.48762 * 61.56369 * 14 13 5 40 40 H 1.08998 * 109.49063 * 181.62548 * 14 13 5 41 41 H 1.09006 * 109.47449 * 186.04313 * 16 15 14 42 42 H 1.09005 * 109.47160 * 306.04419 * 16 15 14 43 43 H 0.97001 * 119.99946 * 0.02562 * 19 17 16 44 44 H 0.96998 * 120.00195 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7229 1.2486 5 7 3.5097 -0.7555 1.2262 6 6 4.0150 -1.3453 2.3871 7 6 3.1464 -1.8026 3.3705 8 6 3.6485 -2.3857 4.5170 9 6 5.0148 -2.5157 4.6875 10 6 5.8832 -2.0615 3.7105 11 17 7.5974 -2.2273 3.9285 12 6 5.3866 -1.4768 2.5604 13 6 4.0000 -1.4491 0.0269 14 6 3.4893 -0.7262 -1.2217 15 7 2.0203 -0.6935 -1.1993 16 6 1.4888 -0.0733 -2.4203 17 6 1.8100 -0.9447 -3.6071 18 8 2.4211 -1.9807 -3.4511 19 7 1.4183 -0.5729 -4.8419 20 6 1.7100 -1.3659 -5.9215 21 1 2.2534 -2.2888 -5.7825 22 6 1.3066 -0.9822 -7.1946 23 7 0.6449 0.1405 -7.3637 24 14 1.7034 -2.0631 -8.6655 25 1 2.4503 -3.2633 -8.2107 26 1 0.4414 -2.4851 -9.3246 27 1 2.5346 -1.2997 -9.6307 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5145 0.8897 30 1 -0.3633 0.5132 -0.8903 31 1 1.6545 -1.7421 1.2622 32 1 1.7023 -0.1935 2.1393 33 1 2.0793 -1.7017 3.2383 34 1 2.9733 -2.7452 5.2794 35 1 5.4048 -2.9718 5.5854 36 1 6.0643 -1.1220 1.7981 37 1 5.0899 -1.4491 0.0270 38 1 3.6360 -2.4765 0.0267 39 1 3.8756 0.2930 -1.2353 40 1 3.8278 -1.2556 -2.1124 41 1 0.4079 0.0358 -2.3316 42 1 1.9431 0.9081 -2.5567 43 1 0.9299 0.2559 -4.9667 44 1 0.3636 0.4086 -8.2524 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573217702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:54 Heat of formation + Delta-G solvation = 7.755560 kcal Electronic energy + Delta-G solvation = -26599.067781 eV Core-core repulsion = 22770.514945 eV Total energy + Delta-G solvation = -3828.552836 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.66679 -39.00693 -37.78895 -36.70675 -35.33146 -33.92648 -32.50122 -31.29991 -31.03717 -30.40340 -28.06754 -27.06449 -25.39552 -23.88275 -23.25013 -22.00334 -21.29206 -19.71724 -19.17123 -17.95547 -17.82794 -16.40664 -16.05492 -15.74140 -15.57947 -15.25003 -14.87027 -14.64386 -14.44478 -14.19113 -13.98034 -13.82589 -13.64005 -13.56898 -13.33956 -12.69442 -12.26420 -12.15111 -11.98525 -11.84872 -11.70240 -11.66774 -11.49699 -11.41013 -11.21521 -11.10536 -11.03216 -10.72851 -10.52240 -10.35297 -10.23593 -9.89744 -9.50056 -9.03664 -8.47141 -8.07440 -7.99915 -7.87618 -6.43226 -3.83942 0.92549 1.05616 1.87744 3.15096 3.25955 3.28092 3.32915 3.65129 3.86400 3.90852 4.21215 4.51571 4.68413 4.79098 4.87193 4.92940 4.93542 5.05142 5.17487 5.20286 5.23668 5.32112 5.39383 5.45225 5.48454 5.55612 5.59923 5.74510 5.80049 5.83767 5.88892 5.96826 6.04875 6.07402 6.10730 6.20393 6.29319 6.34117 6.36324 6.78124 7.01413 7.24941 7.35321 7.54087 8.05177 8.60103 9.16802 9.53018 10.04497 10.74565 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.018915 B = 0.002298 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.937997 B =12181.946474 C =13258.725720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.080 3.920 3 H 0.048 0.952 4 C 0.061 3.939 5 N -0.492 5.492 6 C 0.135 3.865 7 C -0.170 4.170 8 C -0.080 4.080 9 C -0.145 4.145 10 C -0.008 4.008 11 Cl -0.073 7.073 12 C -0.136 4.136 13 C 0.065 3.935 14 C 0.053 3.947 15 N -0.512 5.512 16 C 0.042 3.958 17 C 0.444 3.556 18 O -0.579 6.579 19 N -0.564 5.564 20 C -0.297 4.297 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.033 0.967 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.048 0.952 43 H 0.392 0.608 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.052 0.423 22.867 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 H 0.066 0.934 4 C -0.066 4.066 5 N -0.206 5.206 6 C 0.036 3.964 7 C -0.191 4.191 8 C -0.099 4.099 9 C -0.165 4.165 10 C -0.035 4.035 11 Cl -0.044 7.044 12 C -0.157 4.157 13 C -0.060 4.060 14 C -0.075 4.075 15 N -0.237 5.237 16 C -0.089 4.089 17 C 0.230 3.770 18 O -0.463 6.463 19 N -0.201 5.201 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.153 0.847 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.051 0.949 40 H 0.132 0.868 41 H 0.112 0.888 42 H 0.066 0.934 43 H 0.225 0.775 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.519 -0.179 22.700 23.146 hybrid contribution 0.011 0.308 -0.848 0.902 sum 4.530 0.129 21.852 22.317 Atomic orbital electron populations 1.21903 0.93754 1.03011 1.01998 1.21686 0.95534 0.95899 0.89804 0.93436 1.22402 0.85157 1.00821 0.98182 1.59231 1.09983 1.49942 1.01459 1.18875 0.92593 0.92587 0.92371 1.21448 1.00193 1.01704 0.95726 1.20943 0.94447 0.97401 0.97075 1.20929 0.92952 1.03375 0.99231 1.20702 0.84636 1.01852 0.96301 1.98372 1.12452 1.96476 1.97105 1.20639 0.94215 1.02987 0.97830 1.22362 0.99902 0.96661 0.87109 1.22377 0.87155 0.99266 0.98674 1.61785 1.08613 1.52865 1.00425 1.21941 1.01225 0.95786 0.89968 1.19733 0.85346 0.88197 0.83767 1.90475 1.44753 1.26138 1.84918 1.41878 1.50263 1.22737 1.05198 1.19737 1.33816 1.04648 0.84501 0.87868 1.25261 0.96827 0.96845 0.99052 1.69617 1.38582 1.22133 1.23969 0.85810 0.78149 0.79801 0.80651 1.19222 1.20755 1.20781 0.91477 0.92181 0.91632 0.92333 0.89793 0.84870 0.85133 0.85244 0.84659 0.89840 0.92370 0.94855 0.86818 0.88752 0.93443 0.77511 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.89 37.16 0.33 -1.27 16 2 C 0.08 1.00 2.56 -67.66 -0.17 0.83 16 3 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.06 0.69 3.58 -3.77 -0.01 0.68 16 5 N -0.49 -6.02 4.76 -170.96 -0.81 -6.83 16 6 C 0.13 1.53 5.64 -83.79 -0.47 1.06 16 7 C -0.17 -1.65 8.82 -39.38 -0.35 -2.00 16 8 C -0.08 -0.68 10.04 -39.62 -0.40 -1.07 16 9 C -0.15 -1.31 9.83 -39.51 -0.39 -1.70 16 10 C -0.01 -0.08 6.32 -39.53 -0.25 -0.33 16 11 Cl -0.07 -0.71 28.95 -51.86 -1.50 -2.22 16 12 C -0.14 -1.51 8.97 -39.34 -0.35 -1.86 16 13 C 0.06 0.88 5.38 -3.77 -0.02 0.86 16 14 C 0.05 0.85 5.26 -3.77 -0.02 0.83 16 15 N -0.51 -8.20 4.26 -227.93 -0.97 -9.17 16 16 C 0.04 0.73 5.21 -4.98 -0.03 0.70 16 17 C 0.44 10.18 7.48 -10.98 -0.08 10.10 16 18 O -0.58 -15.07 13.90 5.55 0.08 -14.99 16 19 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 20 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.29 13.05 55.50 0.72 -23.57 16 24 Si 0.93 20.88 29.55 -169.99 -5.02 15.85 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.72 6.15 -51.93 -0.32 0.40 16 31 H 0.06 0.69 7.59 -51.93 -0.39 0.30 16 32 H 0.08 0.79 7.16 -51.93 -0.37 0.41 16 33 H 0.13 1.12 5.81 -52.48 -0.30 0.81 16 34 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.14 1.47 7.17 -52.49 -0.38 1.09 16 37 H 0.08 1.02 6.81 -51.93 -0.35 0.67 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.11 2.18 5.84 -51.93 -0.30 1.88 16 41 H 0.09 1.48 5.74 -51.93 -0.30 1.18 16 42 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 43 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 44 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 364.81 15.07 5.50 5.50 Total: -1.00 -30.09 364.81 -10.46 -40.55 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -5.94 Total: 9.97 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -2.45 Total: -1.01 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -1.12 Total: -53.64 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: 0.08 Total: -14.99 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.09 -10.46 -40.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573217702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.302 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds