Wall clock time and date at job start Tue Mar 31 2020 20:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.48863 * 2 1 4 4 C 1.53041 * 109.48774 * 120.06920 * 2 1 3 5 5 N 1.46963 * 109.36460 * 178.36883 * 4 2 1 6 6 C 1.39668 * 111.00100 * 176.81437 * 5 4 2 7 7 C 1.38941 * 120.07056 * 359.84226 * 6 5 4 8 8 C 1.38088 * 119.95544 * 179.97438 * 7 6 5 9 9 C 1.38295 * 120.08295 * 359.97438 * 8 7 6 10 10 C 1.38379 * 120.13907 * 0.02562 * 9 8 7 11 11 Cl 1.73593 * 119.97737 * 180.02562 * 10 9 8 12 12 C 1.38247 * 120.04865 * 359.97438 * 10 9 8 13 13 C 1.46963 * 110.87696 * 300.67840 * 5 4 2 14 14 C 1.53046 * 109.36367 * 59.31906 * 13 5 4 15 15 N 1.46953 * 109.36740 * 301.60034 * 14 13 5 16 16 C 1.46897 * 111.00211 * 183.18930 * 15 14 13 17 17 C 1.50701 * 109.47105 * 66.04091 * 16 15 14 18 18 O 1.21286 * 120.00178 * 0.02562 * 17 16 15 19 19 N 1.34778 * 120.00057 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00216 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99852 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00184 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99827 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00065 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47306 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47466 * 119.99984 * 24 22 20 27 27 H 1.48501 * 109.47036 * 239.99627 * 24 22 20 28 28 H 1.08999 * 109.47161 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46802 * 300.03868 * 1 2 3 30 30 H 1.08996 * 109.47250 * 60.03808 * 1 2 3 31 31 H 1.08996 * 109.49379 * 58.40375 * 4 2 1 32 32 H 1.09003 * 109.49364 * 298.33140 * 4 2 1 33 33 H 1.08003 * 120.02109 * 359.95989 * 7 6 5 34 34 H 1.07996 * 119.95806 * 180.27646 * 8 7 6 35 35 H 1.07995 * 119.92709 * 179.97438 * 9 8 7 36 36 H 1.07998 * 120.04608 * 179.97438 * 12 10 9 37 37 H 1.08995 * 109.48260 * 179.28776 * 13 5 4 38 38 H 1.08997 * 109.48883 * 299.35292 * 13 5 4 39 39 H 1.09007 * 109.48762 * 61.56369 * 14 13 5 40 40 H 1.08998 * 109.49063 * 181.62548 * 14 13 5 41 41 H 1.09006 * 109.47449 * 186.04313 * 16 15 14 42 42 H 1.09005 * 109.47160 * 306.04419 * 16 15 14 43 43 H 0.97001 * 119.99946 * 0.02562 * 19 17 16 44 44 H 0.96998 * 120.00195 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7229 1.2486 5 7 3.5097 -0.7555 1.2262 6 6 4.0150 -1.3453 2.3871 7 6 3.1464 -1.8026 3.3705 8 6 3.6485 -2.3857 4.5170 9 6 5.0148 -2.5157 4.6875 10 6 5.8832 -2.0615 3.7105 11 17 7.5974 -2.2273 3.9285 12 6 5.3866 -1.4768 2.5604 13 6 4.0000 -1.4491 0.0269 14 6 3.4893 -0.7262 -1.2217 15 7 2.0203 -0.6935 -1.1993 16 6 1.4888 -0.0733 -2.4203 17 6 1.8100 -0.9447 -3.6071 18 8 2.4211 -1.9807 -3.4511 19 7 1.4183 -0.5729 -4.8419 20 6 1.7100 -1.3659 -5.9215 21 1 2.2534 -2.2888 -5.7825 22 6 1.3066 -0.9822 -7.1946 23 7 0.6449 0.1405 -7.3637 24 14 1.7034 -2.0631 -8.6655 25 1 2.4503 -3.2633 -8.2107 26 1 0.4414 -2.4851 -9.3246 27 1 2.5346 -1.2997 -9.6307 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5145 0.8897 30 1 -0.3633 0.5132 -0.8903 31 1 1.6545 -1.7421 1.2622 32 1 1.7023 -0.1935 2.1393 33 1 2.0793 -1.7017 3.2383 34 1 2.9733 -2.7452 5.2794 35 1 5.4048 -2.9718 5.5854 36 1 6.0643 -1.1220 1.7981 37 1 5.0899 -1.4491 0.0270 38 1 3.6360 -2.4765 0.0267 39 1 3.8756 0.2930 -1.2353 40 1 3.8278 -1.2556 -2.1124 41 1 0.4079 0.0358 -2.3316 42 1 1.9431 0.9081 -2.5567 43 1 0.9299 0.2559 -4.9667 44 1 0.3636 0.4086 -8.2524 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573217702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:53 Heat of formation + Delta-G solvation = -11.911806 kcal Electronic energy + Delta-G solvation = -26599.920622 eV Core-core repulsion = 22770.514945 eV Total energy + Delta-G solvation = -3829.405677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.61450 -40.35277 -39.15343 -37.56180 -36.40505 -35.83227 -33.57065 -33.27388 -31.81929 -31.45456 -29.20763 -28.14414 -26.92700 -25.34142 -24.16740 -22.93821 -22.18586 -21.09929 -20.64818 -19.85997 -18.72608 -17.89436 -16.93050 -16.81559 -16.74632 -16.54458 -16.35543 -15.83831 -15.73992 -15.36073 -15.31054 -15.05199 -14.96685 -14.60605 -14.24053 -13.84338 -13.81467 -13.47641 -13.05816 -13.02243 -12.86913 -12.74711 -12.61171 -12.46914 -12.43853 -12.39963 -12.13799 -12.09766 -11.95886 -11.81739 -11.57723 -11.44406 -10.76240 -10.25302 -9.99240 -9.79006 -9.24616 -8.92479 -8.46091 -5.94265 0.17035 0.29818 1.11768 1.36232 1.41628 1.55478 2.05861 2.27914 2.46463 2.69554 2.81571 3.20702 3.36388 3.68278 3.81808 3.91630 4.03587 4.12749 4.15936 4.17034 4.26084 4.31694 4.40330 4.43776 4.45837 4.49782 4.54763 4.65977 4.70357 4.79789 4.87453 4.93073 4.95335 5.11229 5.13971 5.26502 5.36514 5.38483 5.41951 5.59340 5.83838 5.86908 6.05296 6.20129 6.22254 6.61483 7.14078 7.57584 8.13323 8.71586 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.018915 B = 0.002298 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.937997 B =12181.946474 C =13258.725720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.080 3.920 3 H 0.050 0.950 4 C 0.064 3.936 5 N -0.495 5.495 6 C 0.115 3.885 7 C -0.170 4.170 8 C -0.075 4.075 9 C -0.143 4.143 10 C -0.020 4.020 11 Cl -0.074 7.074 12 C -0.148 4.148 13 C 0.076 3.924 14 C 0.058 3.942 15 N -0.527 5.527 16 C 0.055 3.945 17 C 0.443 3.557 18 O -0.613 6.613 19 N -0.575 5.575 20 C -0.329 4.329 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.991 3.009 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.272 1.272 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.111 0.889 33 H 0.149 0.851 34 H 0.163 0.837 35 H 0.149 0.851 36 H 0.129 0.871 37 H 0.090 0.910 38 H 0.039 0.961 39 H 0.036 0.964 40 H 0.074 0.926 41 H 0.117 0.883 42 H 0.063 0.937 43 H 0.396 0.604 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.069 0.790 24.858 25.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.029 4.029 3 H 0.068 0.932 4 C -0.063 4.063 5 N -0.209 5.209 6 C 0.016 3.984 7 C -0.191 4.191 8 C -0.094 4.094 9 C -0.163 4.163 10 C -0.047 4.047 11 Cl -0.045 7.045 12 C -0.169 4.169 13 C -0.049 4.049 14 C -0.070 4.070 15 N -0.253 5.253 16 C -0.076 4.076 17 C 0.230 3.770 18 O -0.499 6.499 19 N -0.212 5.212 20 C -0.458 4.458 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.815 3.185 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.197 1.197 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.129 0.871 33 H 0.167 0.833 34 H 0.180 0.820 35 H 0.167 0.833 36 H 0.147 0.853 37 H 0.108 0.892 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.092 0.908 41 H 0.134 0.866 42 H 0.080 0.920 43 H 0.229 0.771 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.528 0.209 24.721 24.972 hybrid contribution 0.350 0.165 -1.344 1.398 sum 3.878 0.375 23.377 23.700 Atomic orbital electron populations 1.21896 0.92113 1.02901 1.03338 1.21831 0.96786 0.95731 0.88509 0.93167 1.22462 0.84571 1.00747 0.98491 1.59228 1.10571 1.50044 1.01084 1.18975 0.92937 0.93964 0.92496 1.21696 1.00788 1.01062 0.95551 1.21317 0.94639 0.96229 0.97195 1.21258 0.93211 1.02432 0.99364 1.20849 0.84921 1.02331 0.96597 1.98369 1.12560 1.96488 1.97075 1.20681 0.94373 1.03638 0.98235 1.22131 1.00197 0.95370 0.87213 1.22179 0.87568 0.99025 0.98236 1.61772 1.08466 1.53931 1.01117 1.21803 1.02713 0.94845 0.88235 1.20742 0.83506 0.88136 0.84598 1.90457 1.45834 1.28008 1.85639 1.41942 1.51006 1.22796 1.05507 1.19663 1.35227 1.04781 0.86154 0.90370 1.26012 0.96278 0.98044 1.01003 1.69675 1.38694 1.22935 1.24898 0.84895 0.78253 0.77942 0.77401 1.19852 1.19622 1.19695 0.92266 0.89160 0.91979 0.92851 0.87054 0.83348 0.81978 0.83313 0.85348 0.89169 0.94224 0.94544 0.90754 0.86553 0.91955 0.77078 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.89 71.98 0.64 -2.10 16 2 C 0.08 1.85 2.56 44.92 0.12 1.97 16 3 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 4 C 0.06 1.31 3.58 86.31 0.31 1.62 16 5 N -0.49 -11.63 4.76 -694.80 -3.30 -14.94 16 6 C 0.11 2.46 5.64 38.21 0.22 2.68 16 7 C -0.17 -2.87 8.82 22.40 0.20 -2.68 16 8 C -0.08 -1.03 10.04 22.25 0.22 -0.81 16 9 C -0.14 -2.24 9.83 22.32 0.22 -2.02 16 10 C -0.02 -0.39 6.32 22.31 0.14 -0.25 16 11 Cl -0.07 -1.39 28.95 -2.72 -0.08 -1.47 16 12 C -0.15 -3.22 8.97 22.42 0.20 -3.02 16 13 C 0.08 2.13 5.38 86.31 0.46 2.59 16 14 C 0.06 1.91 5.26 86.31 0.45 2.36 16 15 N -0.53 -16.80 4.26 -875.04 -3.73 -20.53 16 16 C 0.05 1.89 5.21 85.56 0.45 2.34 16 17 C 0.44 20.90 7.48 87.66 0.66 21.56 16 18 O -0.61 -33.42 13.90 -3.05 -0.04 -33.46 16 19 N -0.57 -29.39 5.29 -306.99 -1.62 -31.01 16 20 C -0.33 -18.61 9.68 84.04 0.81 -17.79 16 21 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 22 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 23 N -0.92 -49.61 13.05 21.66 0.28 -49.33 16 24 Si 0.99 43.02 29.55 68.60 2.03 45.05 16 25 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.22 6.15 -2.39 -0.01 1.20 16 31 H 0.05 1.16 7.59 -2.39 -0.02 1.14 16 32 H 0.11 1.69 7.16 -2.39 -0.02 1.67 16 33 H 0.15 1.99 5.81 -2.91 -0.02 1.97 16 34 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 35 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.13 2.85 7.17 -2.91 -0.02 2.83 16 37 H 0.09 2.32 6.81 -2.39 -0.02 2.30 16 38 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.07 3.04 5.84 -2.39 -0.01 3.02 16 41 H 0.12 3.51 5.74 -2.38 -0.01 3.50 16 42 H 0.06 1.98 8.12 -2.38 -0.02 1.96 16 43 H 0.40 19.22 7.90 -92.71 -0.73 18.49 16 44 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -66.70 364.81 -0.60 -67.30 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: 0.30 Total: 32.21 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 5.56 Total: 6.18 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -8.37 Total: -115.81 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: -0.04 Total: -33.46 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -66.70 -0.60 -67.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573217702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.389 kcal (2) G-P(sol) polarization free energy of solvation -66.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds