Wall clock time and date at job start Tue Mar 31 2020 20:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.69363 * 2 1 4 4 C 1.53186 * 109.58702 * 239.64801 * 2 1 3 5 5 C 1.53037 * 109.31312 * 294.84215 * 4 2 1 6 6 C 1.53045 * 109.53572 * 298.63921 * 5 4 2 7 7 H 1.09001 * 109.49774 * 301.40880 * 6 5 4 8 8 C 1.53002 * 109.49382 * 181.34793 * 6 5 4 9 9 F 1.39901 * 109.47641 * 60.00002 * 8 6 5 10 10 F 1.39907 * 109.47211 * 179.97438 * 8 6 5 11 11 F 1.39901 * 109.47346 * 299.99788 * 8 6 5 12 12 C 1.52758 * 109.38563 * 61.23791 * 6 5 4 13 13 N 1.46921 * 109.58841 * 120.35157 * 2 1 3 14 14 C 1.34777 * 120.63079 * 246.15892 * 13 2 1 15 15 O 1.21587 * 120.00339 * 5.02412 * 14 13 2 16 16 N 1.34779 * 119.99773 * 185.02154 * 14 13 2 17 17 C 1.46503 * 119.99831 * 174.92065 * 16 14 13 18 18 C 1.50702 * 109.46790 * 180.02562 * 17 16 14 19 19 O 1.21298 * 120.00375 * 359.97438 * 18 17 16 20 20 N 1.34781 * 119.99721 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99654 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00447 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99802 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00291 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99840 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47075 * 90.00188 * 25 23 21 27 27 H 1.48499 * 109.47173 * 330.00097 * 25 23 21 28 28 H 1.48503 * 109.47133 * 210.00092 * 25 23 21 29 29 H 1.08997 * 109.47142 * 299.64246 * 1 2 3 30 30 H 1.08997 * 109.47441 * 59.64629 * 1 2 3 31 31 H 1.09004 * 109.46860 * 179.64346 * 1 2 3 32 32 H 1.08997 * 109.50115 * 54.79356 * 4 2 1 33 33 H 1.09002 * 109.49956 * 174.85896 * 4 2 1 34 34 H 1.09001 * 109.45729 * 58.65616 * 5 4 2 35 35 H 1.09000 * 109.46320 * 178.63294 * 5 4 2 36 36 H 1.08997 * 109.51027 * 185.70212 * 12 6 5 37 37 H 1.09001 * 109.43130 * 65.42081 * 12 6 5 38 38 H 0.97006 * 120.00201 * 354.92602 * 16 14 13 39 39 H 1.08999 * 109.46590 * 60.00446 * 17 16 14 40 40 H 1.08996 * 109.47485 * 300.00510 * 17 16 14 41 41 H 0.96998 * 119.99940 * 359.97438 * 20 18 17 42 42 H 0.96996 * 120.00200 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0263 0.0000 4 6 2.0435 -0.7293 -1.2454 5 6 1.6416 -2.2040 -1.1702 6 6 2.2802 -2.8462 0.0635 7 1 3.3641 -2.7472 0.0053 8 6 1.9051 -4.3285 0.1195 9 9 2.3693 -4.9709 -1.0334 10 9 2.4896 -4.9152 1.2470 11 9 0.5139 -4.4550 0.1957 12 6 1.7742 -2.1420 1.3211 13 7 2.0226 -0.6994 1.1945 14 6 2.6944 -0.0316 2.1531 15 8 2.8190 1.1757 2.0796 16 7 3.2282 -0.7019 3.1934 17 6 4.0523 0.0064 4.1760 18 6 4.5237 -0.9635 5.2287 19 8 4.2025 -2.1315 5.1648 20 7 5.3014 -0.5330 6.2418 21 6 5.7298 -1.4152 7.1998 22 1 5.4445 -2.4553 7.1424 23 6 6.5311 -0.9713 8.2446 24 7 6.9422 -1.8170 9.1625 25 14 7.0251 0.8275 8.3434 26 1 6.0130 1.5763 9.1308 27 1 7.1054 1.3948 6.9734 28 1 8.3499 0.9413 9.0047 29 1 -0.3633 0.5083 0.8931 30 1 -0.3634 0.5193 -0.8867 31 1 -0.3633 -1.0277 -0.0064 32 1 1.6074 -0.2784 -2.1368 33 1 3.1297 -0.6497 -1.2917 34 1 0.5566 -2.2814 -1.0993 35 1 1.9847 -2.7202 -2.0668 36 1 2.3026 -2.5287 2.1924 37 1 0.7045 -2.3203 1.4310 38 1 3.0668 -1.6534 3.2915 39 1 3.4621 0.7937 4.6450 40 1 4.9148 0.4475 3.6765 41 1 5.5579 0.4011 6.2932 42 1 7.5012 -1.5070 9.8920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588747260.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:31 Heat of formation + Delta-G solvation = -214.980468 kcal Electronic energy + Delta-G solvation = -30419.557429 eV Core-core repulsion = 25598.780129 eV Total energy + Delta-G solvation = -4820.777300 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -50.36361 -47.85338 -47.80145 -40.77699 -38.78629 -37.88100 -34.74145 -33.97194 -33.57027 -32.76666 -31.79844 -28.75130 -27.65524 -26.14810 -24.80116 -24.21104 -22.38007 -21.19278 -19.80800 -19.39452 -19.03434 -18.53920 -18.32835 -18.06817 -17.49983 -16.39473 -15.84859 -15.61160 -15.41772 -15.04461 -14.92002 -14.66342 -14.57239 -14.39339 -14.26111 -14.16830 -13.97631 -13.93468 -13.85283 -13.47417 -13.28740 -13.12580 -13.07517 -12.51729 -12.46372 -12.18342 -12.11284 -12.03830 -11.82119 -11.29028 -11.24977 -11.21615 -10.83548 -10.65230 -10.12917 -10.06546 -9.71056 -9.13838 -8.78824 -8.67957 -8.31650 -6.41704 -3.94412 2.26030 2.60824 2.98660 3.03513 3.11823 3.14452 3.43308 3.54979 3.61693 3.69727 3.87443 4.02710 4.31879 4.35276 4.48685 4.53025 4.54696 4.71275 4.94926 5.04452 5.10395 5.13164 5.17739 5.27761 5.36691 5.45970 5.53135 5.60340 5.67252 5.73833 5.78725 5.81928 6.01960 6.28963 6.55146 6.83231 7.43478 7.94752 8.00354 8.42585 8.58828 8.80657 9.28625 9.61904 10.70417 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.015520 B = 0.002953 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.717465 B = 9478.821149 C =10855.134165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.151 3.849 3 H 0.107 0.893 4 C -0.125 4.125 5 C -0.119 4.119 6 C -0.150 4.150 7 H 0.121 0.879 8 C 0.458 3.542 9 F -0.182 7.182 10 F -0.176 7.176 11 F -0.182 7.182 12 C 0.112 3.888 13 N -0.622 5.622 14 C 0.712 3.288 15 O -0.590 6.590 16 N -0.725 5.725 17 C 0.124 3.876 18 C 0.437 3.563 19 O -0.579 6.579 20 N -0.575 5.575 21 C -0.310 4.310 22 H 0.122 0.878 23 C 0.046 3.954 24 N -0.874 5.874 25 Si 0.879 3.121 26 H -0.269 1.269 27 H -0.267 1.267 28 H -0.275 1.275 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.407 0.593 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.374 0.626 42 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.724 1.651 -22.348 25.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.048 3.952 3 H 0.125 0.875 4 C -0.163 4.163 5 C -0.157 4.157 6 C -0.171 4.171 7 H 0.139 0.861 8 C 0.403 3.597 9 F -0.163 7.163 10 F -0.157 7.157 11 F -0.163 7.163 12 C -0.012 4.012 13 N -0.359 5.359 14 C 0.413 3.587 15 O -0.469 6.469 16 N -0.385 5.385 17 C -0.004 4.004 18 C 0.223 3.777 19 O -0.463 6.463 20 N -0.213 5.213 21 C -0.439 4.439 22 H 0.139 0.861 23 C -0.159 4.159 24 N -0.513 5.513 25 Si 0.705 3.295 26 H -0.194 1.194 27 H -0.192 1.192 28 H -0.200 1.200 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.115 0.885 37 H 0.102 0.898 38 H 0.247 0.753 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.208 0.792 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.681 1.682 -22.175 25.120 hybrid contribution 0.466 0.472 0.395 0.772 sum -11.215 2.155 -21.780 24.593 Atomic orbital electron populations 1.22179 0.94959 1.02397 1.02699 1.21096 0.94017 0.97593 0.82532 0.87506 1.21915 1.02166 0.94116 0.98131 1.21637 1.01661 0.96670 0.95686 1.22815 1.05436 0.88569 1.00279 0.86055 1.20416 0.74698 0.90854 0.73748 1.93182 1.88587 1.84199 1.50380 1.93256 1.83990 1.86398 1.52073 1.93176 1.30367 1.96792 1.95989 1.21474 1.02207 0.81340 0.96187 1.47167 1.59793 1.07290 1.21690 1.15693 0.78240 0.85018 0.79707 1.90902 1.65413 1.11798 1.78742 1.44994 1.54157 1.13585 1.25773 1.20837 0.95302 0.94519 0.89752 1.19643 0.84425 0.89126 0.84487 1.90542 1.60619 1.18059 1.77119 1.42109 1.45250 1.10549 1.23377 1.19442 1.28770 0.94401 1.01258 0.86064 1.25066 0.96757 0.98405 0.95648 1.69616 1.34408 1.34594 1.12661 0.86672 0.79492 0.84486 0.78846 1.19380 1.19212 1.19988 0.91928 0.91308 0.92160 0.89650 0.90862 0.89950 0.90150 0.88496 0.89798 0.75254 0.89699 0.89877 0.79227 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.03 37.16 0.34 -0.88 16 2 C 0.15 1.36 3.19 -67.61 -0.22 1.14 16 3 H 0.11 1.14 7.03 -51.93 -0.37 0.77 16 4 C -0.13 -0.82 5.55 -26.62 -0.15 -0.97 16 5 C -0.12 -0.76 4.72 -26.69 -0.13 -0.88 16 6 C -0.15 -1.23 2.30 -90.72 -0.21 -1.44 16 7 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 8 C 0.46 4.29 2.69 37.16 0.10 4.39 16 9 F -0.18 -1.76 16.77 2.25 0.04 -1.72 16 10 F -0.18 -2.03 16.91 2.25 0.04 -2.00 16 11 F -0.18 -1.72 16.22 2.25 0.04 -1.68 16 12 C 0.11 1.09 5.03 -3.94 -0.02 1.07 16 13 N -0.62 -6.98 2.68 -171.18 -0.46 -7.44 16 14 C 0.71 10.73 8.30 -86.92 -0.72 10.01 16 15 O -0.59 -10.54 15.79 5.29 0.08 -10.45 16 16 N -0.73 -11.51 5.44 -66.41 -0.36 -11.87 16 17 C 0.12 2.13 6.16 -5.19 -0.03 2.10 16 18 C 0.44 9.50 7.85 -10.98 -0.09 9.41 16 19 O -0.58 -14.45 15.24 5.54 0.08 -14.37 16 20 N -0.58 -13.23 5.09 -10.96 -0.06 -13.29 16 21 C -0.31 -8.49 10.16 -14.93 -0.15 -8.64 16 22 H 0.12 3.78 7.39 -52.49 -0.39 3.40 16 23 C 0.05 1.21 5.50 -17.47 -0.10 1.12 16 24 N -0.87 -24.86 13.96 55.50 0.77 -24.08 16 25 Si 0.88 18.87 27.74 -169.99 -4.71 14.15 16 26 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 27 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 28 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.41 5.74 -51.93 -0.30 0.11 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.49 6.19 -51.93 -0.32 0.17 16 35 H 0.08 0.45 7.77 -51.93 -0.40 0.05 16 36 H 0.10 1.06 5.39 -51.93 -0.28 0.78 16 37 H 0.08 0.73 7.03 -51.93 -0.37 0.36 16 38 H 0.41 6.44 4.89 -40.82 -0.20 6.24 16 39 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.37 7.59 5.76 -40.82 -0.24 7.36 16 42 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 349.55 15.07 5.27 5.27 Total: -1.00 -32.35 349.55 -5.62 -37.97 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -4.98 Total: 13.09 kcal Atomic # 6 Polarization: 17.80 SS G_CDS: -1.37 Total: 16.43 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.10 Total: -56.69 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: 0.17 Total: -24.82 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 0.11 Total: -5.40 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -4.71 Total: 14.15 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.35 -5.62 -37.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588747260.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.013 kcal (2) G-P(sol) polarization free energy of solvation -32.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds