Wall clock time and date at job start Tue Mar 31 2020 20:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.69363 * 2 1 4 4 C 1.53186 * 109.58702 * 239.64801 * 2 1 3 5 5 C 1.53037 * 109.31312 * 294.84215 * 4 2 1 6 6 C 1.53045 * 109.53572 * 298.63921 * 5 4 2 7 7 H 1.09001 * 109.49774 * 301.40880 * 6 5 4 8 8 C 1.53002 * 109.49382 * 181.34793 * 6 5 4 9 9 F 1.39901 * 109.47641 * 60.00002 * 8 6 5 10 10 F 1.39907 * 109.47211 * 179.97438 * 8 6 5 11 11 F 1.39901 * 109.47346 * 299.99788 * 8 6 5 12 12 C 1.52758 * 109.38563 * 61.23791 * 6 5 4 13 13 N 1.46921 * 109.58841 * 120.35157 * 2 1 3 14 14 C 1.34777 * 120.63079 * 246.15892 * 13 2 1 15 15 O 1.21587 * 120.00339 * 5.02412 * 14 13 2 16 16 N 1.34779 * 119.99773 * 185.02154 * 14 13 2 17 17 C 1.46503 * 119.99831 * 174.92065 * 16 14 13 18 18 C 1.50702 * 109.46790 * 180.02562 * 17 16 14 19 19 O 1.21298 * 120.00375 * 359.97438 * 18 17 16 20 20 N 1.34781 * 119.99721 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99654 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00447 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99802 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00291 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99840 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47075 * 90.00188 * 25 23 21 27 27 H 1.48499 * 109.47173 * 330.00097 * 25 23 21 28 28 H 1.48503 * 109.47133 * 210.00092 * 25 23 21 29 29 H 1.08997 * 109.47142 * 299.64246 * 1 2 3 30 30 H 1.08997 * 109.47441 * 59.64629 * 1 2 3 31 31 H 1.09004 * 109.46860 * 179.64346 * 1 2 3 32 32 H 1.08997 * 109.50115 * 54.79356 * 4 2 1 33 33 H 1.09002 * 109.49956 * 174.85896 * 4 2 1 34 34 H 1.09001 * 109.45729 * 58.65616 * 5 4 2 35 35 H 1.09000 * 109.46320 * 178.63294 * 5 4 2 36 36 H 1.08997 * 109.51027 * 185.70212 * 12 6 5 37 37 H 1.09001 * 109.43130 * 65.42081 * 12 6 5 38 38 H 0.97006 * 120.00201 * 354.92602 * 16 14 13 39 39 H 1.08999 * 109.46590 * 60.00446 * 17 16 14 40 40 H 1.08996 * 109.47485 * 300.00510 * 17 16 14 41 41 H 0.96998 * 119.99940 * 359.97438 * 20 18 17 42 42 H 0.96996 * 120.00200 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0263 0.0000 4 6 2.0435 -0.7293 -1.2454 5 6 1.6416 -2.2040 -1.1702 6 6 2.2802 -2.8462 0.0635 7 1 3.3641 -2.7472 0.0053 8 6 1.9051 -4.3285 0.1195 9 9 2.3693 -4.9709 -1.0334 10 9 2.4896 -4.9152 1.2470 11 9 0.5139 -4.4550 0.1957 12 6 1.7742 -2.1420 1.3211 13 7 2.0226 -0.6994 1.1945 14 6 2.6944 -0.0316 2.1531 15 8 2.8190 1.1757 2.0796 16 7 3.2282 -0.7019 3.1934 17 6 4.0523 0.0064 4.1760 18 6 4.5237 -0.9635 5.2287 19 8 4.2025 -2.1315 5.1648 20 7 5.3014 -0.5330 6.2418 21 6 5.7298 -1.4152 7.1998 22 1 5.4445 -2.4553 7.1424 23 6 6.5311 -0.9713 8.2446 24 7 6.9422 -1.8170 9.1625 25 14 7.0251 0.8275 8.3434 26 1 6.0130 1.5763 9.1308 27 1 7.1054 1.3948 6.9734 28 1 8.3499 0.9413 9.0047 29 1 -0.3633 0.5083 0.8931 30 1 -0.3634 0.5193 -0.8867 31 1 -0.3633 -1.0277 -0.0064 32 1 1.6074 -0.2784 -2.1368 33 1 3.1297 -0.6497 -1.2917 34 1 0.5566 -2.2814 -1.0993 35 1 1.9847 -2.7202 -2.0668 36 1 2.3026 -2.5287 2.1924 37 1 0.7045 -2.3203 1.4310 38 1 3.0668 -1.6534 3.2915 39 1 3.4621 0.7937 4.6450 40 1 4.9148 0.4475 3.6765 41 1 5.5579 0.4011 6.2932 42 1 7.5012 -1.5070 9.8920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588747260.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:28 Heat of formation + Delta-G solvation = -237.782622 kcal Electronic energy + Delta-G solvation = -30420.546204 eV Core-core repulsion = 25598.780129 eV Total energy + Delta-G solvation = -4821.766076 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.15189 -48.63781 -48.61232 -41.80072 -40.40117 -39.00849 -36.33883 -35.55078 -34.38295 -33.88227 -33.58931 -29.64592 -28.92737 -27.00134 -26.27029 -25.21247 -23.15111 -22.17591 -21.47918 -20.80201 -20.16271 -19.71754 -19.30684 -18.88737 -18.37629 -17.65549 -17.16829 -16.95206 -16.82214 -16.23484 -15.96628 -15.78923 -15.63193 -15.49279 -15.14796 -15.04797 -14.97597 -14.78217 -14.73719 -14.66040 -14.40825 -14.31477 -14.09288 -13.87672 -13.77793 -13.52435 -13.04531 -12.96314 -12.79187 -12.44879 -12.44532 -12.00722 -11.98929 -11.81352 -11.58163 -11.46700 -11.30012 -10.65986 -10.37446 -10.30003 -9.65648 -8.45516 -6.07657 1.30709 1.33775 1.34373 1.44533 1.74449 1.78274 2.00590 2.20662 2.52807 2.78945 2.88342 2.96558 3.01121 3.10789 3.60937 3.64701 3.87110 3.90311 3.98978 4.04813 4.26537 4.33899 4.37353 4.43180 4.50916 4.57729 4.59698 4.84507 4.92959 4.99833 5.07016 5.14651 5.24418 5.42680 5.46706 5.51804 5.81191 5.88409 6.48640 6.76960 6.79408 7.27473 7.41259 7.77954 8.70953 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.015520 B = 0.002953 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.717465 B = 9478.821149 C =10855.134165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.144 3.856 3 H 0.089 0.911 4 C -0.116 4.116 5 C -0.115 4.115 6 C -0.143 4.143 7 H 0.121 0.879 8 C 0.459 3.541 9 F -0.182 7.182 10 F -0.193 7.193 11 F -0.181 7.181 12 C 0.110 3.890 13 N -0.614 5.614 14 C 0.711 3.289 15 O -0.619 6.619 16 N -0.731 5.731 17 C 0.137 3.863 18 C 0.444 3.556 19 O -0.615 6.615 20 N -0.576 5.576 21 C -0.331 4.331 22 H 0.063 0.937 23 C -0.008 4.008 24 N -0.926 5.926 25 Si 0.959 3.041 26 H -0.257 1.257 27 H -0.232 1.232 28 H -0.274 1.274 29 H 0.043 0.957 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.407 0.593 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.392 0.608 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.386 3.931 -24.724 27.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.041 3.959 3 H 0.108 0.892 4 C -0.154 4.154 5 C -0.152 4.152 6 C -0.164 4.164 7 H 0.139 0.861 8 C 0.404 3.596 9 F -0.163 7.163 10 F -0.174 7.174 11 F -0.162 7.162 12 C -0.014 4.014 13 N -0.350 5.350 14 C 0.412 3.588 15 O -0.500 6.500 16 N -0.391 5.391 17 C 0.009 3.991 18 C 0.232 3.768 19 O -0.501 6.501 20 N -0.216 5.216 21 C -0.460 4.460 22 H 0.081 0.919 23 C -0.208 4.208 24 N -0.566 5.566 25 Si 0.779 3.221 26 H -0.181 1.181 27 H -0.155 1.155 28 H -0.199 1.199 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.087 0.913 32 H 0.131 0.869 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.247 0.753 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.228 0.772 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.375 3.949 -24.605 27.823 hybrid contribution 0.578 -0.386 1.069 1.275 sum -11.797 3.563 -23.536 26.567 Atomic orbital electron populations 1.22146 0.93498 1.03060 1.02939 1.21348 0.95143 0.96880 0.82486 0.89240 1.21881 1.01886 0.93962 0.97703 1.21683 1.02136 0.96352 0.95038 1.22778 1.05614 0.87547 1.00430 0.86066 1.20563 0.74588 0.91260 0.73181 1.93181 1.88604 1.84298 1.50236 1.93228 1.84313 1.86786 1.53079 1.93176 1.30281 1.96827 1.95955 1.21537 1.02860 0.80470 0.96519 1.47237 1.58550 1.07866 1.21370 1.15774 0.78375 0.84717 0.79907 1.90878 1.66685 1.12972 1.79437 1.45003 1.54456 1.13549 1.26087 1.20724 0.96496 0.93204 0.88723 1.20514 0.82542 0.89331 0.84423 1.90532 1.61354 1.20253 1.77928 1.41903 1.45924 1.10786 1.23025 1.19026 1.30473 0.92976 1.03567 0.91906 1.26069 0.95866 1.04510 0.94324 1.69780 1.35402 1.37738 1.13665 0.85443 0.78997 0.76867 0.80797 1.18102 1.15491 1.19852 0.93782 0.88982 0.91250 0.86913 0.91505 0.88927 0.88691 0.90121 0.88504 0.75327 0.87918 0.87844 0.77184 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.03 71.98 0.65 -1.31 16 2 C 0.14 2.29 3.19 44.97 0.14 2.44 16 3 H 0.09 1.79 7.03 -2.38 -0.02 1.77 16 4 C -0.12 -1.17 5.55 30.67 0.17 -1.00 16 5 C -0.11 -1.11 4.72 30.62 0.14 -0.97 16 6 C -0.14 -2.11 2.30 -10.86 -0.02 -2.13 16 7 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 8 C 0.46 8.06 2.69 71.98 0.19 8.26 16 9 F -0.18 -3.23 16.77 44.97 0.75 -2.47 16 10 F -0.19 -4.45 16.91 44.97 0.76 -3.69 16 11 F -0.18 -3.14 16.22 44.97 0.73 -2.41 16 12 C 0.11 2.02 5.03 86.22 0.43 2.45 16 13 N -0.61 -13.04 2.68 -813.75 -2.18 -15.23 16 14 C 0.71 20.76 8.30 179.05 1.49 22.24 16 15 O -0.62 -21.40 15.79 -3.99 -0.06 -21.46 16 16 N -0.73 -22.75 5.44 -482.29 -2.62 -25.37 16 17 C 0.14 4.49 6.16 85.63 0.53 5.02 16 18 C 0.44 19.34 7.85 87.66 0.69 20.03 16 19 O -0.61 -31.69 15.24 -3.09 -0.05 -31.73 16 20 N -0.58 -26.39 5.09 -306.97 -1.56 -27.96 16 21 C -0.33 -18.80 10.16 84.04 0.85 -17.94 16 22 H 0.06 4.22 7.39 -2.91 -0.02 4.19 16 23 C -0.01 -0.42 5.50 84.93 0.47 0.05 16 24 N -0.93 -54.44 13.96 21.66 0.30 -54.14 16 25 Si 0.96 37.95 27.74 68.60 1.90 39.85 16 26 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 27 H -0.23 -7.78 6.52 99.48 0.65 -7.14 16 28 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 29 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.74 5.74 -2.39 -0.01 0.72 16 32 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.09 0.76 6.19 -2.39 -0.01 0.74 16 35 H 0.09 0.73 7.77 -2.39 -0.02 0.71 16 36 H 0.08 1.77 5.39 -2.39 -0.01 1.76 16 37 H 0.10 1.54 7.03 -2.39 -0.02 1.52 16 38 H 0.41 12.95 4.89 -92.70 -0.45 12.49 16 39 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 40 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 41 H 0.39 15.03 5.76 -92.71 -0.53 14.49 16 42 H 0.28 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -74.02 349.55 3.75 -70.26 By element: Atomic # 1 Polarization: 37.16 SS G_CDS: 0.05 Total: 37.21 kcal Atomic # 6 Polarization: 31.40 SS G_CDS: 5.73 Total: 37.13 kcal Atomic # 7 Polarization: -116.62 SS G_CDS: -6.07 Total: -122.69 kcal Atomic # 8 Polarization: -53.08 SS G_CDS: -0.11 Total: -53.19 kcal Atomic # 9 Polarization: -10.82 SS G_CDS: 2.24 Total: -8.57 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 1.90 Total: 39.85 kcal Total: -74.02 3.75 -70.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588747260.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.518 kcal (2) G-P(sol) polarization free energy of solvation -74.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds