Wall clock time and date at job start Tue Mar 31 2020 20:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.58808 * 2 1 4 4 C 1.53191 * 109.58178 * 120.28545 * 2 1 3 5 5 C 1.53036 * 109.31749 * 65.15182 * 4 2 1 6 6 C 1.53034 * 109.53994 * 61.36059 * 5 4 2 7 7 H 1.09005 * 109.49703 * 58.61875 * 6 5 4 8 8 C 1.53004 * 109.50069 * 178.68700 * 6 5 4 9 9 F 1.39897 * 109.46952 * 60.00026 * 8 6 5 10 10 F 1.39896 * 109.46656 * 300.00181 * 8 6 5 11 11 F 1.39897 * 109.47069 * 180.02562 * 8 6 5 12 12 C 1.53194 * 109.31457 * 298.63943 * 6 5 4 13 13 N 1.46922 * 109.58416 * 239.57133 * 2 1 3 14 14 C 1.34776 * 120.63024 * 113.82421 * 13 2 1 15 15 O 1.21583 * 120.00128 * 354.96789 * 14 13 2 16 16 N 1.34781 * 119.99925 * 174.96489 * 14 13 2 17 17 C 1.46494 * 119.99899 * 185.07500 * 16 14 13 18 18 C 1.50701 * 109.47356 * 179.97438 * 17 16 14 19 19 O 1.21300 * 119.99647 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00148 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99929 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99983 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00145 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99696 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00186 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46900 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47464 * 119.99638 * 25 23 21 28 28 H 1.48504 * 109.47073 * 240.00202 * 25 23 21 29 29 H 1.09002 * 109.47083 * 299.72159 * 1 2 3 30 30 H 1.09001 * 109.46986 * 59.71267 * 1 2 3 31 31 H 1.09003 * 109.47608 * 179.71792 * 1 2 3 32 32 H 1.09004 * 109.49838 * 305.19560 * 4 2 1 33 33 H 1.09008 * 109.52326 * 185.11637 * 4 2 1 34 34 H 1.09002 * 109.45592 * 301.34147 * 5 4 2 35 35 H 1.08997 * 109.46449 * 181.38586 * 5 4 2 36 36 H 1.09004 * 109.58991 * 174.42220 * 12 6 5 37 37 H 1.08996 * 109.58493 * 294.84452 * 12 6 5 38 38 H 0.97001 * 120.00222 * 5.07211 * 16 14 13 39 39 H 1.08997 * 109.47627 * 299.99899 * 17 16 14 40 40 H 1.09007 * 109.47442 * 60.00126 * 17 16 14 41 41 H 0.96994 * 120.00066 * 0.02562 * 20 18 17 42 42 H 0.97003 * 119.99780 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7279 1.2463 5 6 1.6413 -2.2026 1.1729 6 6 2.2798 -2.8465 -0.0598 7 1 3.3638 -2.7480 -0.0014 8 6 1.9039 -4.3287 -0.1144 9 9 0.5127 -4.4544 -0.1908 10 9 2.3674 -4.9700 1.0392 11 9 2.4884 -4.9168 -1.2412 12 6 1.7690 -2.1427 -1.3210 13 7 2.0225 -0.7011 -1.1936 14 6 2.6940 -0.0344 -2.1533 15 8 2.8181 1.1729 -2.0816 16 7 3.2280 -0.7062 -3.1926 17 6 4.0516 0.0009 -4.1764 18 6 4.5233 -0.9704 -5.2277 19 8 4.2026 -2.1383 -5.1618 20 7 5.3007 -0.5410 -6.2415 21 6 5.7294 -1.4246 -7.1982 22 1 5.4445 -2.4647 -7.1391 23 6 6.5312 -0.9821 -8.2431 24 7 6.8782 0.2833 -8.3147 25 14 7.1160 -2.1860 -9.5462 26 1 6.5915 -3.5411 -9.2392 27 1 6.6212 -1.7533 -10.8778 28 1 8.6006 -2.2212 -9.5571 29 1 -0.3633 0.5095 0.8925 30 1 -0.3633 0.5183 -0.8874 31 1 -0.3634 -1.0276 -0.0051 32 1 1.6074 -0.2758 2.1372 33 1 3.1297 -0.6489 1.2928 34 1 0.5564 -2.2800 1.1022 35 1 1.9841 -2.7177 2.0703 36 1 2.2943 -2.5303 -2.1940 37 1 0.6986 -2.3174 -1.4287 38 1 3.0670 -1.6579 -3.2893 39 1 3.4612 0.7873 -4.6466 40 1 4.9141 0.4431 -3.6776 41 1 5.5568 0.3930 -6.2943 42 1 7.4383 0.5921 -9.0440 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588747261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:01 Heat of formation + Delta-G solvation = -222.283534 kcal Electronic energy + Delta-G solvation = -30368.218618 eV Core-core repulsion = 25547.124633 eV Total energy + Delta-G solvation = -4821.093985 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -50.35310 -47.84263 -47.79310 -40.70564 -38.63047 -37.76305 -34.65398 -33.90418 -33.51877 -32.68838 -31.36889 -28.69158 -27.46131 -26.11111 -24.80217 -24.30506 -22.36362 -21.17056 -19.75189 -19.30930 -18.78709 -18.50559 -18.15890 -17.95641 -17.47381 -16.30682 -15.80472 -15.58893 -15.31265 -14.89450 -14.85137 -14.65623 -14.42799 -14.27249 -14.24276 -14.12657 -13.96981 -13.92349 -13.80255 -13.71614 -13.22116 -13.17521 -13.07539 -12.43301 -12.23221 -11.99691 -11.95584 -11.79046 -11.63729 -11.25106 -11.19131 -11.14375 -10.79793 -10.41137 -10.33127 -10.03930 -9.65403 -9.05839 -8.64069 -8.59904 -8.10779 -6.52169 -3.94086 2.30332 2.65269 3.09831 3.21978 3.22423 3.29104 3.45959 3.63921 3.71689 3.73867 3.93111 4.12610 4.35550 4.38238 4.51932 4.58006 4.74297 4.83988 4.99045 5.08903 5.14050 5.16623 5.21399 5.31269 5.39690 5.49136 5.56617 5.70243 5.75138 5.89552 5.97371 6.05347 6.06401 6.35032 6.67871 6.90232 7.45828 7.91895 8.04032 8.44116 8.66333 9.04156 9.38609 9.86303 10.64757 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.014853 B = 0.002882 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.746820 B = 9714.506488 C =11189.502560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.151 3.849 3 H 0.107 0.893 4 C -0.125 4.125 5 C -0.119 4.119 6 C -0.150 4.150 7 H 0.121 0.879 8 C 0.457 3.543 9 F -0.182 7.182 10 F -0.182 7.182 11 F -0.176 7.176 12 C 0.113 3.887 13 N -0.623 5.623 14 C 0.711 3.289 15 O -0.590 6.590 16 N -0.725 5.725 17 C 0.127 3.873 18 C 0.428 3.572 19 O -0.597 6.597 20 N -0.548 5.548 21 C -0.304 4.304 22 H 0.106 0.894 23 C 0.026 3.974 24 N -0.894 5.894 25 Si 0.932 3.068 26 H -0.267 1.267 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.406 0.594 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.396 0.604 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.357 -3.175 20.071 23.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.048 3.952 3 H 0.125 0.875 4 C -0.163 4.163 5 C -0.156 4.156 6 C -0.171 4.171 7 H 0.140 0.860 8 C 0.403 3.597 9 F -0.163 7.163 10 F -0.164 7.164 11 F -0.158 7.158 12 C -0.011 4.011 13 N -0.360 5.360 14 C 0.412 3.588 15 O -0.468 6.468 16 N -0.384 5.384 17 C -0.002 4.002 18 C 0.213 3.787 19 O -0.484 6.484 20 N -0.183 5.183 21 C -0.434 4.434 22 H 0.124 0.876 23 C -0.177 4.177 24 N -0.534 5.534 25 Si 0.759 3.241 26 H -0.191 1.191 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.115 0.885 37 H 0.102 0.898 38 H 0.246 0.754 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.230 0.770 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.315 -2.981 19.958 23.135 hybrid contribution 0.442 -0.808 -0.846 1.251 sum -10.873 -3.789 19.111 22.312 Atomic orbital electron populations 1.22183 0.95023 1.02353 1.02679 1.21082 0.93971 0.97611 0.82572 0.87494 1.21917 1.02175 0.94091 0.98134 1.21632 1.01638 0.96695 0.95672 1.22903 1.05403 0.88473 1.00304 0.86042 1.20432 0.74688 0.90907 0.73712 1.93173 1.30379 1.96801 1.95988 1.93179 1.88610 1.84262 1.50330 1.93249 1.84000 1.86357 1.52159 1.21558 1.02066 0.81408 0.96104 1.47173 1.59852 1.07317 1.21694 1.15713 0.78286 0.85041 0.79724 1.90903 1.65386 1.11795 1.78713 1.45010 1.54130 1.13486 1.25786 1.20817 0.95139 0.94539 0.89657 1.19751 0.84923 0.89032 0.84962 1.90499 1.61843 1.18260 1.77818 1.41786 1.43050 1.11986 1.21492 1.19782 1.28115 0.93448 1.02028 0.87608 1.25324 0.96880 0.96745 0.98767 1.69623 1.36447 1.14255 1.33121 0.85762 0.78340 0.80218 0.79800 1.19115 1.20609 1.20617 0.91333 0.91931 0.92204 0.89678 0.90859 0.89985 0.90193 0.88508 0.89836 0.75393 0.89840 0.90007 0.77020 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.02 37.16 0.34 -0.94 16 2 C 0.15 1.43 3.19 -67.60 -0.22 1.21 16 3 H 0.11 1.20 7.04 -51.93 -0.37 0.83 16 4 C -0.12 -0.86 5.55 -26.61 -0.15 -1.01 16 5 C -0.12 -0.79 4.72 -26.70 -0.13 -0.91 16 6 C -0.15 -1.27 2.31 -90.50 -0.21 -1.48 16 7 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 8 C 0.46 4.36 2.69 37.16 0.10 4.46 16 9 F -0.18 -1.75 16.22 2.25 0.04 -1.71 16 10 F -0.18 -1.78 16.77 2.25 0.04 -1.74 16 11 F -0.18 -2.05 16.92 2.25 0.04 -2.01 16 12 C 0.11 1.14 5.05 -3.71 -0.02 1.12 16 13 N -0.62 -7.32 2.68 -170.91 -0.46 -7.77 16 14 C 0.71 11.24 8.30 -86.91 -0.72 10.52 16 15 O -0.59 -11.04 15.79 5.29 0.08 -10.96 16 16 N -0.72 -12.09 5.44 -66.42 -0.36 -12.45 16 17 C 0.13 2.33 6.16 -5.20 -0.03 2.29 16 18 C 0.43 9.72 7.85 -10.99 -0.09 9.64 16 19 O -0.60 -15.15 15.24 5.54 0.08 -15.06 16 20 N -0.55 -13.49 5.29 -10.96 -0.06 -13.55 16 21 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 22 H 0.11 2.99 7.16 -52.48 -0.38 2.61 16 23 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 24 N -0.89 -23.77 13.05 55.50 0.72 -23.04 16 25 Si 0.93 20.48 29.55 -169.99 -5.02 15.45 16 26 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.43 5.72 -51.93 -0.30 0.13 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 34 H 0.08 0.51 6.20 -51.93 -0.32 0.19 16 35 H 0.08 0.47 7.77 -51.93 -0.40 0.06 16 36 H 0.10 1.10 5.40 -51.93 -0.28 0.82 16 37 H 0.08 0.75 7.00 -51.93 -0.36 0.39 16 38 H 0.41 6.69 4.89 -40.82 -0.20 6.49 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.40 9.37 7.90 -40.82 -0.32 9.05 16 42 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 352.68 15.07 5.31 5.31 Total: -1.00 -31.22 352.68 -5.97 -37.19 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -5.02 Total: 13.26 kcal Atomic # 6 Polarization: 18.46 SS G_CDS: -1.36 Total: 17.09 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.15 Total: -56.82 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: 0.17 Total: -26.02 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.11 Total: -5.47 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.22 -5.97 -37.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588747261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.097 kcal (2) G-P(sol) polarization free energy of solvation -31.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds