Wall clock time and date at job start Tue Mar 31 2020 20:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.58808 * 2 1 4 4 C 1.53191 * 109.58178 * 120.28545 * 2 1 3 5 5 C 1.53036 * 109.31749 * 65.15182 * 4 2 1 6 6 C 1.53034 * 109.53994 * 61.36059 * 5 4 2 7 7 H 1.09005 * 109.49703 * 58.61875 * 6 5 4 8 8 C 1.53004 * 109.50069 * 178.68700 * 6 5 4 9 9 F 1.39897 * 109.46952 * 60.00026 * 8 6 5 10 10 F 1.39896 * 109.46656 * 300.00181 * 8 6 5 11 11 F 1.39897 * 109.47069 * 180.02562 * 8 6 5 12 12 C 1.53194 * 109.31457 * 298.63943 * 6 5 4 13 13 N 1.46922 * 109.58416 * 239.57133 * 2 1 3 14 14 C 1.34776 * 120.63024 * 113.82421 * 13 2 1 15 15 O 1.21583 * 120.00128 * 354.96789 * 14 13 2 16 16 N 1.34781 * 119.99925 * 174.96489 * 14 13 2 17 17 C 1.46494 * 119.99899 * 185.07500 * 16 14 13 18 18 C 1.50701 * 109.47356 * 179.97438 * 17 16 14 19 19 O 1.21300 * 119.99647 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00148 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99929 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99983 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00145 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99696 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00186 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46900 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47464 * 119.99638 * 25 23 21 28 28 H 1.48504 * 109.47073 * 240.00202 * 25 23 21 29 29 H 1.09002 * 109.47083 * 299.72159 * 1 2 3 30 30 H 1.09001 * 109.46986 * 59.71267 * 1 2 3 31 31 H 1.09003 * 109.47608 * 179.71792 * 1 2 3 32 32 H 1.09004 * 109.49838 * 305.19560 * 4 2 1 33 33 H 1.09008 * 109.52326 * 185.11637 * 4 2 1 34 34 H 1.09002 * 109.45592 * 301.34147 * 5 4 2 35 35 H 1.08997 * 109.46449 * 181.38586 * 5 4 2 36 36 H 1.09004 * 109.58991 * 174.42220 * 12 6 5 37 37 H 1.08996 * 109.58493 * 294.84452 * 12 6 5 38 38 H 0.97001 * 120.00222 * 5.07211 * 16 14 13 39 39 H 1.08997 * 109.47627 * 299.99899 * 17 16 14 40 40 H 1.09007 * 109.47442 * 60.00126 * 17 16 14 41 41 H 0.96994 * 120.00066 * 0.02562 * 20 18 17 42 42 H 0.97003 * 119.99780 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7279 1.2463 5 6 1.6413 -2.2026 1.1729 6 6 2.2798 -2.8465 -0.0598 7 1 3.3638 -2.7480 -0.0014 8 6 1.9039 -4.3287 -0.1144 9 9 0.5127 -4.4544 -0.1908 10 9 2.3674 -4.9700 1.0392 11 9 2.4884 -4.9168 -1.2412 12 6 1.7690 -2.1427 -1.3210 13 7 2.0225 -0.7011 -1.1936 14 6 2.6940 -0.0344 -2.1533 15 8 2.8181 1.1729 -2.0816 16 7 3.2280 -0.7062 -3.1926 17 6 4.0516 0.0009 -4.1764 18 6 4.5233 -0.9704 -5.2277 19 8 4.2026 -2.1383 -5.1618 20 7 5.3007 -0.5410 -6.2415 21 6 5.7294 -1.4246 -7.1982 22 1 5.4445 -2.4647 -7.1391 23 6 6.5312 -0.9821 -8.2431 24 7 6.8782 0.2833 -8.3147 25 14 7.1160 -2.1860 -9.5462 26 1 6.5915 -3.5411 -9.2392 27 1 6.6212 -1.7533 -10.8778 28 1 8.6006 -2.2212 -9.5571 29 1 -0.3633 0.5095 0.8925 30 1 -0.3633 0.5183 -0.8874 31 1 -0.3634 -1.0276 -0.0051 32 1 1.6074 -0.2758 2.1372 33 1 3.1297 -0.6489 1.2928 34 1 0.5564 -2.2800 1.1022 35 1 1.9841 -2.7177 2.0703 36 1 2.2943 -2.5303 -2.1940 37 1 0.6986 -2.3174 -1.4287 38 1 3.0670 -1.6579 -3.2893 39 1 3.4612 0.7873 -4.6466 40 1 4.9141 0.4431 -3.6776 41 1 5.5568 0.3930 -6.2943 42 1 7.4383 0.5921 -9.0440 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588747261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:00 Heat of formation + Delta-G solvation = -242.983779 kcal Electronic energy + Delta-G solvation = -30369.116248 eV Core-core repulsion = 25547.124633 eV Total energy + Delta-G solvation = -4821.991615 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.14570 -48.63113 -48.60587 -41.78573 -40.26342 -38.98373 -36.30019 -35.52143 -34.37184 -33.67852 -33.30766 -29.56855 -28.84264 -26.99675 -26.41136 -25.22769 -23.16301 -22.20696 -21.39342 -20.45634 -20.03840 -19.71780 -19.30130 -18.88972 -18.36884 -17.60557 -17.19714 -16.92120 -16.64439 -16.18424 -16.02632 -15.78067 -15.62123 -15.47897 -15.33622 -15.06994 -15.03572 -14.77722 -14.72961 -14.64091 -14.30886 -14.16010 -13.83613 -13.76883 -13.55309 -13.48862 -13.04432 -12.91551 -12.79026 -12.45210 -12.44330 -12.11494 -11.99339 -11.81393 -11.58113 -11.46746 -11.30396 -10.56152 -10.35287 -10.09601 -9.65172 -8.51254 -6.01244 1.33496 1.34918 1.43546 1.57242 1.75432 1.88489 2.01380 2.27340 2.59158 2.83481 2.94963 2.98514 3.12877 3.16105 3.61706 3.64506 3.87567 3.90352 4.05035 4.19535 4.26642 4.34081 4.40497 4.44746 4.50960 4.58051 4.60005 4.84336 4.93098 4.99718 5.06977 5.14486 5.26552 5.38855 5.43387 5.49593 5.81363 5.92218 6.47778 6.79925 7.03637 7.38218 7.46249 7.94330 8.65872 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.014853 B = 0.002882 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.746820 B = 9714.506488 C =11189.502560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.143 3.857 3 H 0.087 0.913 4 C -0.116 4.116 5 C -0.115 4.115 6 C -0.143 4.143 7 H 0.121 0.879 8 C 0.459 3.541 9 F -0.181 7.181 10 F -0.182 7.182 11 F -0.192 7.192 12 C 0.110 3.890 13 N -0.614 5.614 14 C 0.709 3.291 15 O -0.622 6.622 16 N -0.728 5.728 17 C 0.141 3.859 18 C 0.433 3.567 19 O -0.624 6.624 20 N -0.558 5.558 21 C -0.336 4.336 22 H 0.086 0.914 23 C -0.010 4.010 24 N -0.916 5.916 25 Si 0.996 3.004 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.271 1.271 29 H 0.092 0.908 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.113 0.887 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.407 0.593 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.399 0.601 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.025 -3.526 21.457 24.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.041 3.959 3 H 0.105 0.895 4 C -0.154 4.154 5 C -0.152 4.152 6 C -0.164 4.164 7 H 0.139 0.861 8 C 0.405 3.595 9 F -0.162 7.162 10 F -0.163 7.163 11 F -0.173 7.173 12 C -0.013 4.013 13 N -0.350 5.350 14 C 0.411 3.589 15 O -0.503 6.503 16 N -0.388 5.388 17 C 0.012 3.988 18 C 0.220 3.780 19 O -0.512 6.512 20 N -0.193 5.193 21 C -0.465 4.465 22 H 0.104 0.896 23 C -0.211 4.211 24 N -0.556 5.556 25 Si 0.819 3.181 26 H -0.195 1.195 27 H -0.196 1.196 28 H -0.196 1.196 29 H 0.111 0.889 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.131 0.869 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.116 0.884 38 H 0.247 0.753 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.233 0.767 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.007 -3.336 21.387 24.753 hybrid contribution 0.590 -0.708 -1.204 1.517 sum -11.417 -4.045 20.183 23.538 Atomic orbital electron populations 1.22147 0.93431 1.03081 1.02948 1.21346 0.95202 0.96826 0.82564 0.89459 1.21881 1.01838 0.94072 0.97621 1.21678 1.02168 0.96241 0.95091 1.22862 1.05552 0.87615 1.00356 0.86105 1.20532 0.74599 0.91189 0.73195 1.93175 1.30256 1.96826 1.95954 1.93180 1.88625 1.84330 1.50172 1.93223 1.84306 1.86710 1.53101 1.21643 1.02829 0.80341 0.96533 1.47236 1.58503 1.08021 1.21262 1.15817 0.78438 0.84712 0.79973 1.90878 1.66747 1.13171 1.79470 1.44968 1.54344 1.13457 1.25991 1.20610 0.95931 0.93374 0.88880 1.20418 0.83456 0.89269 0.84890 1.90476 1.62443 1.19837 1.78469 1.41823 1.43792 1.11876 1.21858 1.19767 1.29872 0.93156 1.03745 0.89619 1.26111 0.96361 0.98437 1.00149 1.69684 1.36610 1.15415 1.33849 0.84824 0.78109 0.77813 0.77313 1.19483 1.19634 1.19618 0.88930 0.93870 0.91140 0.86882 0.91599 0.88872 0.88625 0.90095 0.88386 0.75267 0.88998 0.88838 0.76673 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.02 71.98 0.65 -1.46 16 2 C 0.14 2.48 3.19 44.98 0.14 2.62 16 3 H 0.09 1.90 7.04 -2.39 -0.02 1.88 16 4 C -0.12 -1.29 5.55 30.67 0.17 -1.12 16 5 C -0.11 -1.17 4.72 30.62 0.14 -1.03 16 6 C -0.14 -2.18 2.31 -10.72 -0.02 -2.21 16 7 H 0.12 1.89 8.14 -2.38 -0.02 1.87 16 8 C 0.46 8.09 2.69 71.98 0.19 8.28 16 9 F -0.18 -3.13 16.22 44.97 0.73 -2.40 16 10 F -0.18 -3.22 16.77 44.97 0.75 -2.47 16 11 F -0.19 -4.39 16.92 44.97 0.76 -3.63 16 12 C 0.11 2.11 5.05 86.36 0.44 2.54 16 13 N -0.61 -13.95 2.68 -812.89 -2.18 -16.12 16 14 C 0.71 22.37 8.30 179.05 1.49 23.85 16 15 O -0.62 -23.37 15.79 -3.98 -0.06 -23.43 16 16 N -0.73 -24.41 5.44 -482.30 -2.62 -27.04 16 17 C 0.14 5.18 6.16 85.63 0.53 5.71 16 18 C 0.43 20.01 7.85 87.66 0.69 20.70 16 19 O -0.62 -32.32 15.24 -3.09 -0.05 -32.36 16 20 N -0.56 -28.00 5.29 -306.97 -1.62 -29.63 16 21 C -0.34 -18.52 9.68 84.04 0.81 -17.71 16 22 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 23 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 24 N -0.92 -48.55 13.05 21.66 0.28 -48.27 16 25 Si 1.00 41.80 29.55 68.60 2.03 43.83 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 27 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 28 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 29 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.80 5.72 -2.39 -0.01 0.78 16 32 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.07 0.86 8.14 -2.38 -0.02 0.85 16 34 H 0.09 0.80 6.20 -2.39 -0.01 0.79 16 35 H 0.10 0.77 7.77 -2.39 -0.02 0.75 16 36 H 0.08 1.84 5.40 -2.38 -0.01 1.82 16 37 H 0.10 1.61 7.00 -2.39 -0.02 1.59 16 38 H 0.41 13.61 4.89 -92.71 -0.45 13.16 16 39 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 40 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 41 H 0.40 19.23 7.90 -92.71 -0.73 18.50 16 42 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -67.42 352.68 3.63 -63.80 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: -0.09 Total: 37.57 kcal Atomic # 6 Polarization: 34.45 SS G_CDS: 5.69 Total: 40.14 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -6.14 Total: -121.06 kcal Atomic # 8 Polarization: -55.69 SS G_CDS: -0.11 Total: -55.80 kcal Atomic # 9 Polarization: -10.73 SS G_CDS: 2.24 Total: -8.49 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -67.42 3.63 -63.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588747261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.187 kcal (2) G-P(sol) polarization free energy of solvation -67.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds