Wall clock time and date at job start Tue Mar 31 2020 20:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.58105 * 2 1 4 4 C 1.53191 * 109.70504 * 239.64416 * 2 1 3 5 5 C 1.53039 * 109.31116 * 185.50586 * 4 2 1 6 6 C 1.53036 * 109.53792 * 61.36469 * 5 4 2 7 7 H 1.09004 * 109.49900 * 58.58909 * 6 5 4 8 8 C 1.53001 * 109.49848 * 178.64579 * 6 5 4 9 9 F 1.39904 * 109.46975 * 59.99849 * 8 6 5 10 10 F 1.39898 * 109.47325 * 179.97438 * 8 6 5 11 11 F 1.39900 * 109.47330 * 300.00286 * 8 6 5 12 12 C 1.53192 * 109.31490 * 298.63128 * 6 5 4 13 13 N 1.46922 * 109.58815 * 120.27742 * 2 1 3 14 14 C 1.34776 * 120.63302 * 353.27001 * 13 2 1 15 15 O 1.21590 * 119.99769 * 354.06687 * 14 13 2 16 16 N 1.34775 * 120.00467 * 174.06534 * 14 13 2 17 17 C 1.46491 * 120.00222 * 185.10007 * 16 14 13 18 18 C 1.50700 * 109.47442 * 180.02562 * 17 16 14 19 19 O 1.21294 * 119.99711 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00699 * 179.97438 * 18 17 16 21 21 C 1.37089 * 120.00267 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00177 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99917 * 179.97438 * 21 20 18 24 24 N 1.31417 * 120.00208 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00006 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.46849 * 90.00249 * 25 23 21 27 27 H 1.48506 * 109.46953 * 210.00192 * 25 23 21 28 28 H 1.48496 * 109.46946 * 330.00096 * 25 23 21 29 29 H 1.09005 * 109.47265 * 305.70093 * 1 2 3 30 30 H 1.08999 * 109.47723 * 65.70286 * 1 2 3 31 31 H 1.09000 * 109.47350 * 185.70380 * 1 2 3 32 32 H 1.09003 * 109.49687 * 305.45717 * 4 2 1 33 33 H 1.09003 * 109.49801 * 65.51977 * 4 2 1 34 34 H 1.09007 * 109.45567 * 181.38212 * 5 4 2 35 35 H 1.08997 * 109.46017 * 301.34333 * 5 4 2 36 36 H 1.09003 * 109.58584 * 294.84979 * 12 6 5 37 37 H 1.09000 * 109.58765 * 174.42122 * 12 6 5 38 38 H 0.96996 * 119.99566 * 5.09733 * 16 14 13 39 39 H 1.08997 * 109.47274 * 300.00127 * 17 16 14 40 40 H 1.09000 * 109.47557 * 59.99788 * 17 16 14 41 41 H 0.97002 * 119.99228 * 359.97438 * 20 18 17 42 42 H 0.96996 * 120.00141 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0465 -0.7288 -1.2445 5 6 3.5706 -0.8442 -1.1673 6 6 3.9602 -1.6606 0.0671 7 1 3.5037 -2.6488 0.0087 8 6 5.4824 -1.8040 0.1249 9 9 6.0677 -0.5356 0.2012 10 9 5.8380 -2.5499 1.2538 11 9 5.9334 -2.4571 -1.0271 12 6 3.4654 -0.9423 1.3265 13 7 2.0225 -0.6979 1.1954 14 6 1.1677 -1.1014 2.1561 15 8 -0.0073 -0.7954 2.0920 16 7 1.6153 -1.8441 3.1878 17 6 0.6695 -2.3766 4.1716 18 6 1.4196 -3.1646 5.2144 19 8 2.6257 -3.2713 5.1425 20 7 0.7505 -3.7508 6.2269 21 6 1.4329 -4.4680 7.1752 22 1 2.5068 -4.5631 7.1112 23 6 0.7430 -5.0719 8.2193 24 7 -0.5637 -4.9559 8.2975 25 14 1.6729 -6.0487 9.5118 26 1 2.0683 -5.1474 10.6237 27 1 0.8011 -7.1300 10.0372 28 1 2.8884 -6.6451 8.9019 29 1 -0.3634 0.5997 0.8346 30 1 -0.3634 0.4228 -0.9366 31 1 -0.3634 -1.0226 0.1021 32 1 1.6080 -1.7257 -1.2905 33 1 1.7683 -0.1676 -2.1365 34 1 3.9430 -1.3408 -2.0634 35 1 4.0071 0.1520 -1.0964 36 1 3.9886 0.0078 1.4346 37 1 3.6524 -1.5664 2.2004 38 1 2.5637 -2.0261 3.2789 39 1 0.1406 -1.5524 4.6504 40 1 -0.0481 -3.0266 3.6711 41 1 -0.2141 -3.6651 6.2845 42 1 -1.0453 -5.3771 9.0265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588747263.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:09 Heat of formation + Delta-G solvation = -208.758708 kcal Electronic energy + Delta-G solvation = -30383.283155 eV Core-core repulsion = 25562.775651 eV Total energy + Delta-G solvation = -4820.507504 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.35249 -47.84261 -47.79285 -40.79166 -38.54516 -37.64692 -34.90929 -33.98257 -33.50120 -32.58217 -31.36724 -28.67847 -27.45196 -25.89257 -24.58167 -24.16802 -22.20572 -21.37009 -19.86653 -19.53088 -18.75853 -18.50558 -18.29937 -17.96229 -17.22666 -16.35588 -15.78029 -15.63549 -15.21456 -14.91144 -14.72886 -14.60002 -14.47914 -14.30428 -14.23422 -14.05241 -14.01596 -13.93522 -13.91611 -13.63108 -13.34930 -13.21718 -12.67191 -12.36562 -12.18605 -11.99077 -11.89577 -11.63363 -11.50304 -11.29035 -11.23589 -11.13218 -11.12659 -10.46266 -10.32025 -9.64279 -9.26420 -8.94734 -8.63934 -8.58581 -8.10759 -6.52131 -3.94106 2.30001 2.66245 3.11263 3.21962 3.22872 3.27297 3.46208 3.63521 3.71337 3.74014 3.92808 4.12529 4.35070 4.38095 4.48811 4.66435 4.76446 4.83771 5.00112 5.09835 5.16587 5.22779 5.27620 5.36554 5.48862 5.51822 5.68586 5.78897 5.86422 5.97601 6.06241 6.14230 6.23299 6.58422 6.76215 6.90440 7.45555 7.91669 8.05548 8.44237 8.69699 9.04065 9.38560 9.86390 10.64718 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.013844 B = 0.002961 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.023810 B = 9454.222914 C =11161.208531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.159 3.841 3 H 0.072 0.928 4 C -0.128 4.128 5 C -0.117 4.117 6 C -0.151 4.151 7 H 0.121 0.879 8 C 0.458 3.542 9 F -0.182 7.182 10 F -0.176 7.176 11 F -0.182 7.182 12 C 0.114 3.886 13 N -0.626 5.626 14 C 0.710 3.290 15 O -0.582 6.582 16 N -0.726 5.726 17 C 0.127 3.873 18 C 0.427 3.573 19 O -0.598 6.598 20 N -0.548 5.548 21 C -0.305 4.305 22 H 0.105 0.895 23 C 0.026 3.974 24 N -0.895 5.895 25 Si 0.933 3.067 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.268 1.268 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.404 0.596 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.396 0.604 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.161 9.246 -19.787 22.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.055 3.945 3 H 0.090 0.910 4 C -0.166 4.166 5 C -0.155 4.155 6 C -0.171 4.171 7 H 0.140 0.860 8 C 0.403 3.597 9 F -0.163 7.163 10 F -0.158 7.158 11 F -0.164 7.164 12 C -0.010 4.010 13 N -0.364 5.364 14 C 0.411 3.589 15 O -0.460 6.460 16 N -0.386 5.386 17 C -0.001 4.001 18 C 0.213 3.787 19 O -0.485 6.485 20 N -0.183 5.183 21 C -0.434 4.434 22 H 0.123 0.877 23 C -0.177 4.177 24 N -0.535 5.535 25 Si 0.759 3.241 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.193 1.193 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.244 0.756 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.230 0.770 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.958 9.274 -19.684 22.560 hybrid contribution 0.683 -0.716 0.819 1.285 sum 6.641 8.558 -18.865 21.754 Atomic orbital electron populations 1.22185 0.91965 1.04298 1.00924 1.21166 0.96314 0.94579 0.82408 0.91028 1.22010 0.93985 1.02304 0.98329 1.21602 0.97670 1.00534 0.95684 1.22910 0.88751 1.05171 1.00310 0.86050 1.20425 0.91795 0.73780 0.73719 1.93177 1.86671 1.40494 1.95989 1.93250 1.93512 1.77017 1.51982 1.93181 1.91090 1.81662 1.50442 1.21572 0.82343 1.00970 0.96132 1.47175 1.05247 1.62523 1.21433 1.15782 0.84625 0.78837 0.79624 1.90954 1.15494 1.61477 1.78086 1.45127 1.12080 1.55011 1.26365 1.20795 0.91335 0.98251 0.89697 1.19763 0.88286 0.85697 0.84967 1.90497 1.14229 1.66116 1.77608 1.41779 1.10082 1.44578 1.21857 1.19730 0.94079 1.27093 1.02535 0.87672 1.25323 0.95672 0.97974 0.98709 1.69614 1.06521 1.44271 1.33066 0.85818 0.79121 0.78985 0.80146 1.20262 1.20800 1.19301 0.89840 0.93988 0.91412 0.90836 0.89724 0.90143 0.90229 0.89841 0.88460 0.75552 0.89868 0.90050 0.77025 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 7.62 37.16 0.28 -1.23 16 2 C 0.16 1.51 3.48 -67.60 -0.24 1.28 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.13 -0.91 5.38 -26.61 -0.14 -1.05 16 5 C -0.12 -0.79 4.92 -26.69 -0.13 -0.92 16 6 C -0.15 -1.28 2.31 -90.50 -0.21 -1.49 16 7 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 8 C 0.46 4.38 2.69 37.16 0.10 4.48 16 9 F -0.18 -1.76 16.22 2.25 0.04 -1.72 16 10 F -0.18 -2.05 16.92 2.25 0.04 -2.02 16 11 F -0.18 -1.79 16.78 2.25 0.04 -1.75 16 12 C 0.11 1.15 5.47 -3.71 -0.02 1.12 16 13 N -0.63 -7.32 2.97 -170.91 -0.51 -7.82 16 14 C 0.71 10.90 8.10 -86.92 -0.70 10.19 16 15 O -0.58 -10.15 11.92 5.29 0.06 -10.09 16 16 N -0.73 -11.94 5.44 -66.42 -0.36 -12.30 16 17 C 0.13 2.31 6.16 -5.20 -0.03 2.28 16 18 C 0.43 9.68 7.85 -10.99 -0.09 9.59 16 19 O -0.60 -15.13 15.24 5.54 0.08 -15.05 16 20 N -0.55 -13.45 5.29 -10.96 -0.06 -13.51 16 21 C -0.30 -8.23 9.68 -14.94 -0.14 -8.38 16 22 H 0.11 2.96 7.16 -52.49 -0.38 2.59 16 23 C 0.03 0.68 5.50 -17.46 -0.10 0.58 16 24 N -0.89 -23.74 13.05 55.50 0.72 -23.02 16 25 Si 0.93 20.47 29.55 -169.99 -5.02 15.44 16 26 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 29 H 0.08 1.12 6.54 -51.93 -0.34 0.78 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.89 6.96 -51.93 -0.36 0.53 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.48 7.77 -51.92 -0.40 0.08 16 35 H 0.08 0.50 7.84 -51.93 -0.41 0.09 16 36 H 0.08 0.74 7.67 -51.93 -0.40 0.34 16 37 H 0.10 1.10 5.40 -51.93 -0.28 0.82 16 38 H 0.40 6.64 4.90 -40.82 -0.20 6.44 16 39 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.40 9.34 7.90 -40.82 -0.32 9.02 16 42 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 351.30 15.07 5.29 5.29 Total: -1.00 -30.41 351.30 -6.27 -36.69 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -5.18 Total: 13.41 kcal Atomic # 6 Polarization: 17.87 SS G_CDS: -1.42 Total: 16.45 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.20 Total: -56.66 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: 0.15 Total: -25.14 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 0.11 Total: -5.49 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.41 -6.27 -36.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588747263.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.070 kcal (2) G-P(sol) polarization free energy of solvation -30.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds