Wall clock time and date at job start Tue Mar 31 2020 20:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.58105 * 2 1 4 4 C 1.53191 * 109.70504 * 239.64416 * 2 1 3 5 5 C 1.53039 * 109.31116 * 185.50586 * 4 2 1 6 6 C 1.53036 * 109.53792 * 61.36469 * 5 4 2 7 7 H 1.09004 * 109.49900 * 58.58909 * 6 5 4 8 8 C 1.53001 * 109.49848 * 178.64579 * 6 5 4 9 9 F 1.39904 * 109.46975 * 59.99849 * 8 6 5 10 10 F 1.39898 * 109.47325 * 179.97438 * 8 6 5 11 11 F 1.39900 * 109.47330 * 300.00286 * 8 6 5 12 12 C 1.53192 * 109.31490 * 298.63128 * 6 5 4 13 13 N 1.46922 * 109.58815 * 120.27742 * 2 1 3 14 14 C 1.34776 * 120.63302 * 353.27001 * 13 2 1 15 15 O 1.21590 * 119.99769 * 354.06687 * 14 13 2 16 16 N 1.34775 * 120.00467 * 174.06534 * 14 13 2 17 17 C 1.46491 * 120.00222 * 185.10007 * 16 14 13 18 18 C 1.50700 * 109.47442 * 180.02562 * 17 16 14 19 19 O 1.21294 * 119.99711 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00699 * 179.97438 * 18 17 16 21 21 C 1.37089 * 120.00267 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00177 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99917 * 179.97438 * 21 20 18 24 24 N 1.31417 * 120.00208 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00006 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.46849 * 90.00249 * 25 23 21 27 27 H 1.48506 * 109.46953 * 210.00192 * 25 23 21 28 28 H 1.48496 * 109.46946 * 330.00096 * 25 23 21 29 29 H 1.09005 * 109.47265 * 305.70093 * 1 2 3 30 30 H 1.08999 * 109.47723 * 65.70286 * 1 2 3 31 31 H 1.09000 * 109.47350 * 185.70380 * 1 2 3 32 32 H 1.09003 * 109.49687 * 305.45717 * 4 2 1 33 33 H 1.09003 * 109.49801 * 65.51977 * 4 2 1 34 34 H 1.09007 * 109.45567 * 181.38212 * 5 4 2 35 35 H 1.08997 * 109.46017 * 301.34333 * 5 4 2 36 36 H 1.09003 * 109.58584 * 294.84979 * 12 6 5 37 37 H 1.09000 * 109.58765 * 174.42122 * 12 6 5 38 38 H 0.96996 * 119.99566 * 5.09733 * 16 14 13 39 39 H 1.08997 * 109.47274 * 300.00127 * 17 16 14 40 40 H 1.09000 * 109.47557 * 59.99788 * 17 16 14 41 41 H 0.97002 * 119.99228 * 359.97438 * 20 18 17 42 42 H 0.96996 * 120.00141 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0465 -0.7288 -1.2445 5 6 3.5706 -0.8442 -1.1673 6 6 3.9602 -1.6606 0.0671 7 1 3.5037 -2.6488 0.0087 8 6 5.4824 -1.8040 0.1249 9 9 6.0677 -0.5356 0.2012 10 9 5.8380 -2.5499 1.2538 11 9 5.9334 -2.4571 -1.0271 12 6 3.4654 -0.9423 1.3265 13 7 2.0225 -0.6979 1.1954 14 6 1.1677 -1.1014 2.1561 15 8 -0.0073 -0.7954 2.0920 16 7 1.6153 -1.8441 3.1878 17 6 0.6695 -2.3766 4.1716 18 6 1.4196 -3.1646 5.2144 19 8 2.6257 -3.2713 5.1425 20 7 0.7505 -3.7508 6.2269 21 6 1.4329 -4.4680 7.1752 22 1 2.5068 -4.5631 7.1112 23 6 0.7430 -5.0719 8.2193 24 7 -0.5637 -4.9559 8.2975 25 14 1.6729 -6.0487 9.5118 26 1 2.0683 -5.1474 10.6237 27 1 0.8011 -7.1300 10.0372 28 1 2.8884 -6.6451 8.9019 29 1 -0.3634 0.5997 0.8346 30 1 -0.3634 0.4228 -0.9366 31 1 -0.3634 -1.0226 0.1021 32 1 1.6080 -1.7257 -1.2905 33 1 1.7683 -0.1676 -2.1365 34 1 3.9430 -1.3408 -2.0634 35 1 4.0071 0.1520 -1.0964 36 1 3.9886 0.0078 1.4346 37 1 3.6524 -1.5664 2.2004 38 1 2.5637 -2.0261 3.2789 39 1 0.1406 -1.5524 4.6504 40 1 -0.0481 -3.0266 3.6711 41 1 -0.2141 -3.6651 6.2845 42 1 -1.0453 -5.3771 9.0265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588747263.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:08 Heat of formation + Delta-G solvation = -228.746083 kcal Electronic energy + Delta-G solvation = -30384.149873 eV Core-core repulsion = 25562.775651 eV Total energy + Delta-G solvation = -4821.374222 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.14548 -48.63399 -48.60419 -41.86065 -40.24416 -38.74402 -36.37935 -35.68429 -34.39113 -33.62573 -33.28334 -29.62403 -28.83931 -26.89526 -26.26409 -24.98132 -23.09720 -22.19832 -21.34103 -20.86388 -20.07150 -19.63128 -19.29861 -19.05230 -18.24244 -17.45664 -17.34827 -16.95054 -16.48295 -16.16296 -15.93478 -15.85981 -15.58882 -15.45802 -15.15284 -15.09391 -15.03319 -14.81951 -14.74410 -14.69666 -14.47191 -14.11467 -13.91586 -13.56259 -13.54058 -13.41347 -13.18057 -12.90677 -12.73073 -12.45455 -12.22606 -12.12886 -12.07184 -11.88536 -11.82457 -11.56956 -10.55631 -10.40339 -10.21412 -10.08515 -9.60098 -8.50930 -6.00954 1.35662 1.36386 1.43470 1.55659 1.76707 1.89781 2.06306 2.27531 2.60265 2.83975 2.95247 2.98376 3.14317 3.16462 3.62288 3.64678 3.82645 3.96062 4.06639 4.20881 4.23667 4.37707 4.41888 4.46673 4.52461 4.59751 4.68947 4.85386 4.92583 5.00634 5.12916 5.24817 5.34977 5.38030 5.42641 5.73393 5.81225 5.92596 6.48341 6.84664 7.03907 7.42028 7.50944 7.95058 8.65960 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.013844 B = 0.002961 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.023810 B = 9454.222914 C =11161.208531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.152 3.848 3 H 0.091 0.909 4 C -0.119 4.119 5 C -0.113 4.113 6 C -0.144 4.144 7 H 0.120 0.880 8 C 0.459 3.541 9 F -0.181 7.181 10 F -0.192 7.192 11 F -0.182 7.182 12 C 0.112 3.888 13 N -0.619 5.619 14 C 0.706 3.294 15 O -0.605 6.605 16 N -0.731 5.731 17 C 0.142 3.858 18 C 0.432 3.568 19 O -0.625 6.625 20 N -0.558 5.558 21 C -0.337 4.337 22 H 0.086 0.914 23 C -0.010 4.010 24 N -0.916 5.916 25 Si 0.996 3.004 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.270 1.270 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.405 0.595 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.399 0.601 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.647 9.874 -21.237 24.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.050 3.950 3 H 0.109 0.891 4 C -0.157 4.157 5 C -0.150 4.150 6 C -0.164 4.164 7 H 0.138 0.862 8 C 0.405 3.595 9 F -0.162 7.162 10 F -0.173 7.173 11 F -0.163 7.163 12 C -0.012 4.012 13 N -0.356 5.356 14 C 0.408 3.592 15 O -0.486 6.486 16 N -0.391 5.391 17 C 0.014 3.986 18 C 0.219 3.781 19 O -0.513 6.513 20 N -0.194 5.194 21 C -0.466 4.466 22 H 0.104 0.896 23 C -0.210 4.210 24 N -0.556 5.556 25 Si 0.819 3.181 26 H -0.196 1.196 27 H -0.196 1.196 28 H -0.195 1.195 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.130 0.870 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.245 0.755 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.233 0.767 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.451 9.925 -21.176 24.260 hybrid contribution 0.550 -0.849 1.191 1.563 sum 7.001 9.076 -19.985 23.039 Atomic orbital electron populations 1.22021 0.93168 1.02275 1.01180 1.21456 0.95385 0.95767 0.82426 0.89144 1.21963 0.93986 1.01906 0.97851 1.21638 0.97361 1.00943 0.95051 1.22866 0.87752 1.05361 1.00446 0.86217 1.20537 0.92246 0.73547 0.73184 1.93178 1.86762 1.40329 1.95956 1.93223 1.93708 1.77482 1.52929 1.93180 1.91152 1.81702 1.50308 1.21653 0.81405 1.01699 0.96449 1.47237 1.05539 1.61705 1.21092 1.15916 0.84759 0.78657 0.79833 1.90959 1.16650 1.62332 1.78645 1.45110 1.11724 1.55619 1.26646 1.20572 0.91094 0.98031 0.88919 1.20461 0.88092 0.84674 0.84871 1.90474 1.15721 1.66842 1.78263 1.41819 1.10188 1.45117 1.22248 1.19727 0.93585 1.29065 1.04253 0.89648 1.26107 0.96515 0.98349 1.00052 1.69678 1.07473 1.44664 1.33755 0.84887 0.77882 0.77784 0.77557 1.19581 1.19620 1.19492 0.92599 0.91220 0.93923 0.91692 0.86964 0.88692 0.89027 0.88289 0.90103 0.75546 0.89001 0.88924 0.76680 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 7.62 71.98 0.55 -2.16 16 2 C 0.15 2.56 3.48 44.97 0.16 2.71 16 3 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 4 C -0.12 -1.32 5.38 30.67 0.16 -1.15 16 5 C -0.11 -1.15 4.92 30.62 0.15 -1.00 16 6 C -0.14 -2.19 2.31 -10.72 -0.02 -2.21 16 7 H 0.12 1.89 8.14 -2.38 -0.02 1.87 16 8 C 0.46 8.13 2.69 71.98 0.19 8.33 16 9 F -0.18 -3.16 16.22 44.97 0.73 -2.43 16 10 F -0.19 -4.40 16.92 44.97 0.76 -3.64 16 11 F -0.18 -3.26 16.78 44.97 0.75 -2.50 16 12 C 0.11 2.11 5.47 86.36 0.47 2.58 16 13 N -0.62 -13.77 2.97 -812.90 -2.42 -16.18 16 14 C 0.71 21.53 8.10 179.06 1.45 22.98 16 15 O -0.61 -21.20 11.92 -4.00 -0.05 -21.25 16 16 N -0.73 -24.15 5.44 -482.32 -2.63 -26.77 16 17 C 0.14 5.19 6.16 85.63 0.53 5.71 16 18 C 0.43 19.93 7.85 87.66 0.69 20.61 16 19 O -0.62 -32.35 15.24 -3.07 -0.05 -32.40 16 20 N -0.56 -27.98 5.29 -306.99 -1.62 -29.60 16 21 C -0.34 -18.57 9.68 84.04 0.81 -17.76 16 22 H 0.09 4.96 7.16 -2.91 -0.02 4.94 16 23 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 24 N -0.92 -48.56 13.05 21.66 0.28 -48.28 16 25 Si 1.00 41.80 29.55 68.60 2.03 43.83 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 27 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 28 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 29 H 0.06 1.49 6.54 -2.38 -0.02 1.47 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.04 1.10 6.96 -2.39 -0.02 1.09 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.09 0.78 7.77 -2.38 -0.02 0.76 16 35 H 0.09 0.78 7.84 -2.39 -0.02 0.76 16 36 H 0.10 1.58 7.67 -2.39 -0.02 1.56 16 37 H 0.08 1.82 5.40 -2.39 -0.01 1.81 16 38 H 0.40 13.46 4.90 -92.71 -0.45 13.01 16 39 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 40 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.40 19.19 7.90 -92.71 -0.73 18.46 16 42 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -66.00 351.30 3.31 -62.69 By element: Atomic # 1 Polarization: 38.01 SS G_CDS: -0.09 Total: 37.92 kcal Atomic # 6 Polarization: 33.01 SS G_CDS: 5.61 Total: 38.62 kcal Atomic # 7 Polarization: -114.46 SS G_CDS: -6.38 Total: -120.84 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -0.09 Total: -53.65 kcal Atomic # 9 Polarization: -10.82 SS G_CDS: 2.24 Total: -8.57 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -66.00 3.31 -62.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588747263.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.056 kcal (2) G-P(sol) polarization free energy of solvation -66.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds