Wall clock time and date at job start Tue Mar 31 2020 21:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47441 * 2 1 4 4 C 1.53000 * 109.47191 * 239.99673 * 2 1 3 5 5 N 1.46497 * 109.46895 * 65.00500 * 4 2 1 6 6 C 1.34783 * 119.99620 * 180.02562 * 5 4 2 7 7 O 1.21579 * 119.99950 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99807 * 179.97438 * 6 5 4 9 9 C 1.39583 * 120.00134 * 179.97438 * 8 6 5 10 10 N 1.32267 * 119.72360 * 359.97438 * 9 8 6 11 11 C 1.31970 * 121.68781 * 180.02562 * 10 9 8 12 12 C 1.38075 * 120.95397 * 359.97438 * 11 10 9 13 13 C 1.38784 * 119.35375 * 0.02562 * 12 11 10 14 14 C 1.38790 * 118.44957 * 0.02562 * 13 12 11 15 15 O 1.35987 * 120.49452 * 179.97438 * 14 13 12 16 16 C 1.42897 * 117.00173 * 359.97438 * 15 14 13 17 17 C 1.52994 * 109.47207 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47444 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99907 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00169 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00196 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99948 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47096 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.46896 * 120.00267 * 22 20 18 25 25 H 1.48502 * 109.46895 * 239.99693 * 22 20 18 26 26 C 1.50700 * 109.46937 * 119.99794 * 2 1 3 27 27 O 1.20821 * 120.00262 * 119.99942 * 26 2 1 28 28 O 1.34235 * 119.99868 * 299.99885 * 26 2 1 29 29 H 1.09006 * 109.46789 * 59.99801 * 1 2 3 30 30 H 1.08998 * 109.47104 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47023 * 300.00464 * 1 2 3 32 32 H 1.08998 * 109.47223 * 304.99890 * 4 2 1 33 33 H 1.09000 * 109.46954 * 185.00485 * 4 2 1 34 34 H 0.97003 * 120.00519 * 359.97438 * 5 4 2 35 35 H 0.97003 * 120.00332 * 0.02562 * 8 6 5 36 36 H 1.08002 * 119.52228 * 180.27252 * 11 10 9 37 37 H 1.08001 * 120.31777 * 180.02562 * 12 11 10 38 38 H 1.08001 * 120.77481 * 180.02562 * 13 12 11 39 39 H 1.08998 * 109.47572 * 300.00031 * 16 15 14 40 40 H 1.09007 * 109.47166 * 60.00297 * 16 15 14 41 41 H 1.09007 * 109.47441 * 299.99893 * 17 16 15 42 42 H 1.09004 * 109.47389 * 59.99662 * 17 16 15 43 43 H 0.96998 * 119.99773 * 180.02562 * 21 20 18 44 44 H 0.96699 * 116.99684 * 179.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 1.9957 -0.4138 -3.6659 7 8 2.6272 -1.4465 -3.7794 8 7 1.6388 0.2820 -4.7636 9 6 1.9947 -0.1827 -6.0308 10 7 2.6826 -1.3063 -6.1479 11 6 3.0397 -1.7808 -7.3264 12 6 2.7056 -1.1172 -8.4902 13 6 1.9841 0.0660 -8.4154 14 6 1.6228 0.5421 -7.1628 15 8 0.9160 1.6975 -7.0412 16 6 0.5742 2.3792 -8.2496 17 6 -0.2139 3.6470 -7.9146 18 6 -0.5750 4.3657 -9.1890 19 1 -0.2722 3.9590 -10.1426 20 6 -1.2909 5.5428 -9.1376 21 7 -1.6593 6.0383 -7.9763 22 14 -1.7379 6.4340 -10.7174 23 1 -1.2097 5.6758 -11.8798 24 1 -3.2151 6.5402 -10.8248 25 1 -1.1436 7.7948 -10.7031 26 6 2.0323 -0.7104 1.2305 27 8 2.7269 -1.6927 1.1198 28 8 1.7080 -0.2517 2.4496 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6054 -1.7199 -1.2951 33 1 3.1263 -0.7996 -1.2055 34 1 1.1484 0.8591 -2.3518 35 1 1.1353 1.1061 -4.6730 36 1 3.5973 -2.7041 -7.3816 37 1 3.0028 -1.5150 -9.4493 38 1 1.7101 0.6037 -9.3111 39 1 1.4847 2.6479 -8.7853 40 1 -0.0360 1.7271 -8.8746 41 1 -1.1245 3.3780 -7.3791 42 1 0.3958 4.2994 -7.2894 43 1 -2.1633 6.8663 -7.9402 44 1 2.0534 -0.7409 3.2089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593960779.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:52 Heat of formation + Delta-G solvation = -118.565407 kcal Electronic energy + Delta-G solvation = -28056.582247 eV Core-core repulsion = 23781.842558 eV Total energy + Delta-G solvation = -4274.739689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.02152 -40.74871 -39.53021 -37.80764 -36.79133 -36.09481 -34.70195 -33.48736 -32.88535 -31.53558 -30.52875 -29.06333 -26.91606 -25.43553 -24.92960 -23.45543 -22.74318 -21.27955 -20.90024 -20.58415 -18.85784 -18.46381 -18.09477 -17.46941 -17.06167 -16.33885 -16.17841 -15.96199 -15.88039 -15.41516 -15.27066 -14.64794 -14.51952 -14.49135 -14.20290 -13.93456 -13.83487 -13.59733 -13.08805 -12.82523 -12.65371 -12.42319 -12.07717 -12.00724 -11.92943 -11.84639 -11.63137 -11.06044 -11.02456 -10.89347 -10.70338 -10.68698 -10.40664 -10.05635 -9.79435 -9.41511 -9.30661 -9.12192 -9.06087 -8.54270 -7.62498 -6.19994 -4.24614 1.28717 1.48139 1.75318 2.15358 2.77109 3.20461 3.20716 3.27887 3.30846 3.53910 3.94123 4.03471 4.07369 4.32512 4.33501 4.54335 4.68375 4.87673 4.97937 5.09268 5.17195 5.22471 5.24430 5.28390 5.42321 5.49681 5.60860 5.68711 5.86233 5.89872 6.04006 6.07031 6.19590 6.22701 6.37914 6.53740 6.56886 6.81138 7.34336 7.43290 7.50919 7.61868 7.70412 7.86196 8.12854 8.25741 8.60914 8.80883 9.40508 10.91504 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.010728 B = 0.002327 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.374594 B =12031.903404 C =14518.663612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 H 0.119 0.881 4 C 0.155 3.845 5 N -0.747 5.747 6 C 0.698 3.302 7 O -0.531 6.531 8 N -0.660 5.660 9 C 0.347 3.653 10 N -0.442 5.442 11 C 0.077 3.923 12 C -0.163 4.163 13 C -0.146 4.146 14 C 0.065 3.935 15 O -0.317 6.317 16 C 0.066 3.934 17 C 0.026 3.974 18 C -0.527 4.527 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.889 5.889 22 Si 0.899 3.101 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.489 3.511 27 O -0.508 6.508 28 O -0.514 6.514 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.398 0.602 35 H 0.420 0.580 36 H 0.156 0.844 37 H 0.134 0.866 38 H 0.145 0.855 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.263 0.737 44 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.694 -11.834 14.442 19.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.137 0.863 4 C 0.031 3.969 5 N -0.405 5.405 6 C 0.398 3.602 7 O -0.402 6.402 8 N -0.310 5.310 9 C 0.113 3.887 10 N -0.156 5.156 11 C -0.080 4.080 12 C -0.184 4.184 13 C -0.173 4.173 14 C 0.013 3.987 15 O -0.229 6.229 16 C -0.008 4.008 17 C -0.011 4.011 18 C -0.565 4.565 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.527 5.527 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C 0.330 3.670 27 O -0.395 6.395 28 O -0.326 6.326 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.232 0.768 35 H 0.258 0.742 36 H 0.174 0.826 37 H 0.152 0.848 38 H 0.162 0.838 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.073 0.927 44 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 6.378 -13.057 15.065 20.931 hybrid contribution -0.756 1.570 -1.238 2.138 sum 5.622 -11.486 13.827 18.834 Atomic orbital electron populations 1.21834 0.91030 1.03643 1.03976 1.21168 0.99160 1.01615 0.89654 0.86308 1.20930 1.01029 0.94615 0.80350 1.45006 1.62096 1.29047 1.04364 1.15844 0.80639 0.83792 0.79973 1.91050 1.41711 1.22792 1.84629 1.42452 1.58040 1.27893 1.02630 1.17467 0.97170 0.91461 0.82631 1.67630 1.10917 1.09658 1.27432 1.22418 0.99201 0.99886 0.86471 1.21885 1.00453 0.95970 1.00097 1.21588 1.01003 0.98059 0.96661 1.19531 0.96785 0.89385 0.92981 1.86090 1.67672 1.32281 1.36896 1.23381 0.98874 0.94989 0.83533 1.19127 0.95058 0.88784 0.98095 1.20990 1.35846 1.07502 0.92196 0.92272 1.24982 0.95530 0.97127 0.96495 1.69970 1.37955 1.20790 1.24008 0.86433 0.78269 0.79593 0.83117 1.19615 1.20801 1.20807 1.23084 0.76859 0.82366 0.84712 1.90784 1.35512 1.25948 1.87229 1.84511 1.72304 1.59011 1.16777 0.90482 0.91577 0.90684 0.90356 0.90277 0.76783 0.74231 0.82646 0.84821 0.83752 0.92953 0.92957 0.95374 0.95376 0.92706 0.72843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.00 37.16 0.33 -0.46 16 2 C -0.10 -0.62 2.86 -91.77 -0.26 -0.89 16 3 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 4 C 0.16 1.49 4.41 -4.04 -0.02 1.47 16 5 N -0.75 -7.43 5.29 -65.23 -0.34 -7.77 16 6 C 0.70 10.16 8.53 -86.92 -0.74 9.42 16 7 O -0.53 -9.85 14.59 5.30 0.08 -9.77 16 8 N -0.66 -9.55 5.40 -15.68 -0.08 -9.64 16 9 C 0.35 5.77 7.45 -154.44 -1.15 4.62 16 10 N -0.44 -7.54 7.87 -12.22 -0.10 -7.64 16 11 C 0.08 1.06 11.17 -17.55 -0.20 0.87 16 12 C -0.16 -2.04 10.10 -39.44 -0.40 -2.44 16 13 C -0.15 -2.12 9.14 -39.18 -0.36 -2.48 16 14 C 0.07 1.07 6.72 -38.92 -0.26 0.81 16 15 O -0.32 -5.71 9.39 -19.70 -0.18 -5.89 16 16 C 0.07 1.28 4.70 37.15 0.17 1.46 16 17 C 0.03 0.64 5.34 -27.89 -0.15 0.49 16 18 C -0.53 -13.91 9.11 -34.44 -0.31 -14.23 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 22 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 C 0.49 3.84 7.63 36.01 0.27 4.11 16 27 O -0.51 -5.82 16.68 -18.75 -0.31 -6.13 16 28 O -0.51 -2.77 13.33 -39.27 -0.52 -3.29 16 29 H 0.08 0.37 7.18 -51.93 -0.37 0.00 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.35 8.11 -51.93 -0.42 -0.07 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.89 7.96 -51.93 -0.41 0.48 16 34 H 0.40 2.77 7.67 -40.82 -0.31 2.46 16 35 H 0.42 5.23 8.06 -40.82 -0.33 4.90 16 36 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.14 1.93 6.44 -52.49 -0.34 1.60 16 39 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 40 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 41 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.41 0.64 9.10 45.56 0.41 1.05 16 LS Contribution 381.10 15.07 5.74 5.74 Total: -1.00 -35.91 381.10 -8.25 -44.15 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.07 Total: 4.96 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -3.16 Total: 4.31 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.21 Total: -49.54 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.94 Total: -25.08 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.91 -8.25 -44.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593960779.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.411 kcal (2) G-P(sol) polarization free energy of solvation -35.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds