Wall clock time and date at job start Tue Mar 31 2020 21:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47441 * 2 1 4 4 C 1.53000 * 109.47191 * 239.99673 * 2 1 3 5 5 N 1.46497 * 109.46895 * 65.00500 * 4 2 1 6 6 C 1.34783 * 119.99620 * 180.02562 * 5 4 2 7 7 O 1.21579 * 119.99950 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99807 * 179.97438 * 6 5 4 9 9 C 1.39583 * 120.00134 * 179.97438 * 8 6 5 10 10 N 1.32267 * 119.72360 * 359.97438 * 9 8 6 11 11 C 1.31970 * 121.68781 * 180.02562 * 10 9 8 12 12 C 1.38075 * 120.95397 * 359.97438 * 11 10 9 13 13 C 1.38784 * 119.35375 * 0.02562 * 12 11 10 14 14 C 1.38790 * 118.44957 * 0.02562 * 13 12 11 15 15 O 1.35987 * 120.49452 * 179.97438 * 14 13 12 16 16 C 1.42897 * 117.00173 * 359.97438 * 15 14 13 17 17 C 1.52994 * 109.47207 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47444 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99907 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00169 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00196 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99948 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47096 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.46896 * 120.00267 * 22 20 18 25 25 H 1.48502 * 109.46895 * 239.99693 * 22 20 18 26 26 C 1.50700 * 109.46937 * 119.99794 * 2 1 3 27 27 O 1.20821 * 120.00262 * 119.99942 * 26 2 1 28 28 O 1.34235 * 119.99868 * 299.99885 * 26 2 1 29 29 H 1.09006 * 109.46789 * 59.99801 * 1 2 3 30 30 H 1.08998 * 109.47104 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47023 * 300.00464 * 1 2 3 32 32 H 1.08998 * 109.47223 * 304.99890 * 4 2 1 33 33 H 1.09000 * 109.46954 * 185.00485 * 4 2 1 34 34 H 0.97003 * 120.00519 * 359.97438 * 5 4 2 35 35 H 0.97003 * 120.00332 * 0.02562 * 8 6 5 36 36 H 1.08002 * 119.52228 * 180.27252 * 11 10 9 37 37 H 1.08001 * 120.31777 * 180.02562 * 12 11 10 38 38 H 1.08001 * 120.77481 * 180.02562 * 13 12 11 39 39 H 1.08998 * 109.47572 * 300.00031 * 16 15 14 40 40 H 1.09007 * 109.47166 * 60.00297 * 16 15 14 41 41 H 1.09007 * 109.47441 * 299.99893 * 17 16 15 42 42 H 1.09004 * 109.47389 * 59.99662 * 17 16 15 43 43 H 0.96998 * 119.99773 * 180.02562 * 21 20 18 44 44 H 0.96699 * 116.99684 * 179.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 1.9957 -0.4138 -3.6659 7 8 2.6272 -1.4465 -3.7794 8 7 1.6388 0.2820 -4.7636 9 6 1.9947 -0.1827 -6.0308 10 7 2.6826 -1.3063 -6.1479 11 6 3.0397 -1.7808 -7.3264 12 6 2.7056 -1.1172 -8.4902 13 6 1.9841 0.0660 -8.4154 14 6 1.6228 0.5421 -7.1628 15 8 0.9160 1.6975 -7.0412 16 6 0.5742 2.3792 -8.2496 17 6 -0.2139 3.6470 -7.9146 18 6 -0.5750 4.3657 -9.1890 19 1 -0.2722 3.9590 -10.1426 20 6 -1.2909 5.5428 -9.1376 21 7 -1.6593 6.0383 -7.9763 22 14 -1.7379 6.4340 -10.7174 23 1 -1.2097 5.6758 -11.8798 24 1 -3.2151 6.5402 -10.8248 25 1 -1.1436 7.7948 -10.7031 26 6 2.0323 -0.7104 1.2305 27 8 2.7269 -1.6927 1.1198 28 8 1.7080 -0.2517 2.4496 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6054 -1.7199 -1.2951 33 1 3.1263 -0.7996 -1.2055 34 1 1.1484 0.8591 -2.3518 35 1 1.1353 1.1061 -4.6730 36 1 3.5973 -2.7041 -7.3816 37 1 3.0028 -1.5150 -9.4493 38 1 1.7101 0.6037 -9.3111 39 1 1.4847 2.6479 -8.7853 40 1 -0.0360 1.7271 -8.8746 41 1 -1.1245 3.3780 -7.3791 42 1 0.3958 4.2994 -7.2894 43 1 -2.1633 6.8663 -7.9402 44 1 2.0534 -0.7409 3.2089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593960779.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:51 Heat of formation + Delta-G solvation = -144.623465 kcal Electronic energy + Delta-G solvation = -28057.712209 eV Core-core repulsion = 23781.842558 eV Total energy + Delta-G solvation = -4275.869651 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.09913 -41.49916 -40.65339 -39.11443 -37.44333 -36.87291 -35.90466 -35.42176 -33.71399 -32.82775 -32.12682 -30.30847 -27.62363 -27.13981 -25.71011 -24.74766 -23.89291 -22.78046 -21.87127 -21.51353 -19.95959 -19.32109 -19.10983 -18.74975 -18.01711 -17.74137 -17.28007 -17.17441 -16.91964 -16.52958 -16.46844 -16.23284 -15.53069 -15.45433 -15.23158 -15.12008 -14.70155 -14.49260 -14.33791 -14.11481 -13.86540 -13.58971 -13.26675 -13.19708 -12.77326 -12.75773 -12.68073 -12.49524 -12.42056 -12.19717 -11.86061 -11.68916 -11.67399 -11.58780 -11.52345 -11.36674 -10.59719 -10.43196 -10.23664 -10.17039 -8.80815 -8.24365 -6.36157 0.16693 0.32623 1.13550 1.25622 1.43250 1.44112 1.56514 2.07150 2.10123 2.13713 2.45836 2.93263 3.00595 3.11211 3.38003 3.60051 3.76892 3.89040 3.99946 4.04658 4.16033 4.32835 4.36411 4.37064 4.49777 4.59969 4.66205 4.77926 4.82935 4.91090 4.98708 5.16084 5.23871 5.28926 5.31215 5.34003 5.53279 5.53593 5.57488 5.72581 5.82347 6.10482 6.36786 6.70228 6.78975 6.93959 7.16616 7.33769 7.50812 8.88387 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.010728 B = 0.002327 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.374594 B =12031.903404 C =14518.663612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.144 0.856 4 C 0.159 3.841 5 N -0.725 5.725 6 C 0.695 3.305 7 O -0.575 6.575 8 N -0.658 5.658 9 C 0.328 3.672 10 N -0.474 5.474 11 C 0.074 3.926 12 C -0.147 4.147 13 C -0.147 4.147 14 C 0.042 3.958 15 O -0.327 6.327 16 C 0.083 3.917 17 C 0.030 3.970 18 C -0.543 4.543 19 H 0.070 0.930 20 C 0.004 3.996 21 N -0.928 5.928 22 Si 0.969 3.031 23 H -0.259 1.259 24 H -0.279 1.279 25 H -0.280 1.280 26 C 0.495 3.505 27 O -0.551 6.551 28 O -0.505 6.505 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.415 0.585 35 H 0.427 0.573 36 H 0.184 0.816 37 H 0.175 0.825 38 H 0.158 0.842 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.003 0.997 42 H 0.003 0.997 43 H 0.266 0.734 44 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.720 -11.742 13.190 18.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 H 0.162 0.838 4 C 0.034 3.966 5 N -0.384 5.384 6 C 0.395 3.605 7 O -0.449 6.449 8 N -0.308 5.308 9 C 0.095 3.905 10 N -0.190 5.190 11 C -0.083 4.083 12 C -0.168 4.168 13 C -0.174 4.174 14 C -0.009 4.009 15 O -0.241 6.241 16 C 0.009 3.991 17 C -0.007 4.007 18 C -0.581 4.581 19 H 0.088 0.912 20 C -0.195 4.195 21 N -0.568 5.568 22 Si 0.793 3.207 23 H -0.182 1.182 24 H -0.205 1.205 25 H -0.205 1.205 26 C 0.338 3.662 27 O -0.442 6.442 28 O -0.318 6.318 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.252 0.748 35 H 0.265 0.735 36 H 0.201 0.799 37 H 0.192 0.808 38 H 0.175 0.825 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.021 0.979 42 H 0.021 0.979 43 H 0.075 0.925 44 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 6.379 -12.931 13.861 20.001 hybrid contribution -0.713 1.452 -0.777 1.795 sum 5.666 -11.479 13.084 18.304 Atomic orbital electron populations 1.21843 0.89805 1.03481 1.05051 1.21115 0.99915 1.02092 0.87533 0.83792 1.20850 0.99879 0.94395 0.81455 1.44811 1.61162 1.29341 1.03100 1.16042 0.80292 0.83338 0.80872 1.91008 1.43790 1.24721 1.85389 1.42438 1.57959 1.28048 1.02360 1.17662 0.97731 0.91770 0.83292 1.67677 1.11825 1.10157 1.29293 1.23034 0.98504 1.00657 0.86120 1.22261 0.98510 0.94592 1.01391 1.21890 1.00592 0.98697 0.96171 1.19650 0.98038 0.89184 0.94031 1.86019 1.68649 1.33331 1.36067 1.22951 0.98814 0.93331 0.84014 1.18945 0.94231 0.90672 0.96877 1.21434 1.35545 1.07818 0.93262 0.91171 1.25934 0.95509 0.98153 0.99861 1.70096 1.38900 1.21407 1.26366 0.85340 0.77916 0.78236 0.79207 1.18221 1.20500 1.20525 1.23241 0.75818 0.81524 0.85612 1.90778 1.37616 1.27902 1.87862 1.84469 1.71829 1.58876 1.16667 0.89708 0.92398 0.89279 0.92132 0.92179 0.74781 0.73458 0.79933 0.80753 0.82471 0.91844 0.91831 0.97882 0.97903 0.92547 0.70798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.00 71.98 0.65 -0.70 16 2 C -0.09 -1.05 2.86 -11.54 -0.03 -1.08 16 3 H 0.14 1.05 8.14 -2.38 -0.02 1.03 16 4 C 0.16 3.13 4.41 86.38 0.38 3.51 16 5 N -0.73 -14.53 5.29 -478.55 -2.53 -17.06 16 6 C 0.70 20.79 8.53 179.05 1.53 22.32 16 7 O -0.57 -22.10 14.59 -3.96 -0.06 -22.16 16 8 N -0.66 -19.45 5.40 -321.78 -1.74 -21.18 16 9 C 0.33 10.98 7.45 132.98 0.99 11.98 16 10 N -0.47 -16.09 7.87 -192.58 -1.52 -17.61 16 11 C 0.07 1.90 11.17 84.63 0.95 2.84 16 12 C -0.15 -3.23 10.10 22.36 0.23 -3.01 16 13 C -0.15 -3.95 9.14 22.53 0.21 -3.74 16 14 C 0.04 1.36 6.72 22.70 0.15 1.52 16 15 O -0.33 -11.82 9.39 -93.41 -0.88 -12.69 16 16 C 0.08 3.18 4.70 71.98 0.34 3.52 16 17 C 0.03 1.48 5.34 29.85 0.16 1.64 16 18 C -0.54 -28.52 9.11 25.60 0.23 -28.29 16 19 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 20 C 0.00 0.23 5.46 84.65 0.46 0.69 16 21 N -0.93 -53.41 13.29 21.45 0.28 -53.13 16 22 Si 0.97 41.47 29.54 68.60 2.03 43.50 16 23 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 24 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 26 C 0.50 7.49 7.63 71.24 0.54 8.04 16 27 O -0.55 -12.96 16.68 21.98 0.37 -12.60 16 28 O -0.50 -4.63 13.33 -51.46 -0.69 -5.32 16 29 H 0.08 0.67 7.18 -2.38 -0.02 0.66 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 0.63 8.11 -2.39 -0.02 0.61 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 1.43 7.96 -2.39 -0.02 1.42 16 34 H 0.41 5.47 7.67 -92.71 -0.71 4.76 16 35 H 0.43 10.90 8.06 -92.71 -0.75 10.15 16 36 H 0.18 3.53 8.06 -2.91 -0.02 3.50 16 37 H 0.18 2.40 8.06 -2.91 -0.02 2.37 16 38 H 0.16 3.77 6.44 -2.91 -0.02 3.75 16 39 H 0.06 2.27 7.70 -2.39 -0.02 2.25 16 40 H 0.06 2.27 7.70 -2.38 -0.02 2.25 16 41 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 42 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 43 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 44 H 0.43 0.70 9.10 -74.06 -0.67 0.02 16 Total: -1.00 -79.80 381.10 0.99 -78.81 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -1.06 Total: 20.21 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: 6.78 Total: 19.22 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -5.50 Total: -108.98 kcal Atomic # 8 Polarization: -51.51 SS G_CDS: -1.25 Total: -52.77 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -79.80 0.99 -78.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593960779.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.814 kcal (2) G-P(sol) polarization free energy of solvation -79.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds