Wall clock time and date at job start Tue Mar 31 2020 19:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 O 1.42903 * 109.46923 * 240.00539 * 2 1 3 5 5 C 1.35673 * 116.99599 * 270.00033 * 4 2 1 6 6 N 1.32352 * 119.64064 * 0.02562 * 5 4 2 7 7 C 1.32468 * 121.54925 * 179.97438 * 6 5 4 8 8 N 1.39001 * 119.66631 * 179.97438 * 7 6 5 9 9 C 1.48531 * 110.99530 * 242.60125 * 8 7 6 10 10 C 1.54943 * 103.22542 * 159.72156 * 9 8 7 11 11 C 1.54597 * 102.91971 * 322.58955 * 10 9 8 12 12 O 1.42902 * 110.30387 * 263.03849 * 11 10 9 13 13 C 1.50695 * 110.39559 * 140.91650 * 11 10 9 14 14 H 1.08001 * 120.00018 * 244.23261 * 13 11 10 15 15 C 1.37879 * 120.00237 * 64.22575 * 13 11 10 16 16 N 1.31513 * 119.99835 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00132 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.46835 * 60.00373 * 17 15 13 19 19 H 1.48502 * 109.47025 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47085 * 300.00207 * 17 15 13 21 21 C 1.47896 * 111.00151 * 359.97438 * 8 7 6 22 22 C 1.39016 * 120.66208 * 359.97438 * 7 6 5 23 23 C 1.38460 * 119.21840 * 0.02562 * 22 7 6 24 24 C 1.38631 * 118.56962 * 359.74708 * 23 22 7 25 25 N 1.48003 * 120.36100 * 180.26357 * 24 23 22 26 26 O 1.21796 * 120.00466 * 0.23696 * 25 24 23 27 27 O 1.21804 * 119.99878 * 180.22510 * 25 24 23 28 28 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 29 29 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 30 30 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 32 32 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 33 33 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 35 35 H 1.08998 * 110.67131 * 278.15457 * 9 8 7 36 36 H 1.09004 * 110.67196 * 41.29158 * 9 8 7 37 37 H 1.08993 * 110.72873 * 204.22269 * 10 9 8 38 38 H 1.08999 * 110.87570 * 81.01352 * 10 9 8 39 39 H 0.96704 * 113.99646 * 295.71490 * 12 11 10 40 40 H 0.97001 * 120.00404 * 179.97438 * 16 15 13 41 41 H 1.09006 * 109.92150 * 333.51501 * 21 8 7 42 42 H 1.09010 * 109.91293 * 94.80322 * 21 8 7 43 43 H 1.07999 * 120.39446 * 180.02562 * 22 7 6 44 44 H 1.08006 * 120.71386 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.2116 -2.0108 -1.0654 6 7 1.9685 -2.6252 0.0814 7 6 2.1552 -3.9290 0.2224 8 7 1.8878 -4.5341 1.4449 9 6 3.1198 -5.1258 2.0266 10 6 2.7727 -5.2597 3.5307 11 6 1.9442 -3.9845 3.8091 12 8 2.7753 -2.9657 4.3689 13 6 0.7998 -4.2944 4.7392 14 1 -0.2188 -4.1909 4.3953 15 6 1.0529 -4.7103 6.0292 16 7 2.2932 -4.8361 6.4480 17 14 -0.3657 -5.0952 7.1819 18 1 -1.1877 -6.1901 6.6068 19 1 0.1691 -5.5177 8.5012 20 1 -1.2063 -3.8832 7.3541 21 6 1.4112 -3.5431 2.4338 22 6 2.6158 -4.6982 -0.8400 23 6 2.8797 -4.0858 -2.0535 24 6 2.6685 -2.7203 -2.1667 25 7 2.9320 -2.0262 -3.4470 26 8 3.3325 -2.6555 -4.4098 27 8 2.7481 -0.8256 -3.5379 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 0.8900 32 1 1.6768 1.9562 0.8901 33 1 3.1301 1.4425 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 3.3203 -6.1039 1.5895 36 1 3.9704 -4.4587 1.8861 37 1 3.6789 -5.2710 4.1362 38 1 2.1772 -6.1541 3.7137 39 1 3.1402 -3.1884 5.2363 40 1 2.4714 -5.1283 7.3556 41 1 1.7981 -2.5547 2.1853 42 1 0.3213 -3.5257 2.4464 43 1 2.7661 -5.7610 -0.7204 44 1 3.2387 -4.6601 -2.8947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594585593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:44 Heat of formation + Delta-G solvation = -38.335569 kcal Electronic energy + Delta-G solvation = -30478.355000 eV Core-core repulsion = 26207.094338 eV Total energy + Delta-G solvation = -4271.260662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.12795 -41.03389 -39.38213 -37.93491 -36.30494 -35.22070 -33.35387 -33.02457 -32.25454 -31.05244 -29.30739 -28.42569 -27.35116 -25.95437 -25.05458 -23.81380 -22.90214 -21.40847 -21.09795 -19.71657 -19.43171 -18.52856 -18.41352 -17.44019 -17.32482 -16.94283 -16.18748 -15.87326 -15.12599 -14.91129 -14.71396 -14.31567 -14.21231 -14.10844 -13.80296 -13.49946 -13.09019 -12.65798 -12.43404 -12.40845 -12.27300 -12.03366 -11.81635 -11.50084 -11.43255 -11.37451 -11.12409 -11.08561 -10.95004 -10.94192 -10.88814 -10.75817 -10.62949 -10.55225 -10.18916 -10.02559 -9.40873 -9.35618 -8.75596 -8.37041 -8.31018 -6.37740 -4.44943 -0.08251 0.86499 1.38201 1.54293 2.55346 3.14931 3.15791 3.20565 3.23519 3.52347 4.04635 4.19744 4.26996 4.56309 4.70406 4.77198 4.86140 4.89274 5.16105 5.16783 5.34097 5.41075 5.48262 5.49708 5.59142 5.66327 5.68436 5.75447 5.80592 5.83917 6.01254 6.02546 6.10674 6.30272 6.47138 6.48518 6.60461 6.74769 6.88970 7.09345 7.20393 7.27650 7.48850 7.64149 7.86139 7.92602 8.56577 9.22148 9.32881 10.70031 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.016300 B = 0.003429 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.352012 B = 8164.613030 C = 9232.383117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.073 3.927 3 C -0.148 4.148 4 O -0.269 6.269 5 C 0.424 3.576 6 N -0.561 5.561 7 C 0.407 3.593 8 N -0.452 5.452 9 C 0.043 3.957 10 C -0.122 4.122 11 C 0.245 3.755 12 O -0.592 6.592 13 C -0.534 4.534 14 H 0.063 0.937 15 C 0.071 3.929 16 N -0.899 5.899 17 Si 0.902 3.098 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.050 3.950 22 C -0.224 4.224 23 C 0.035 3.965 24 C -0.168 4.168 25 N 0.052 4.948 26 O -0.194 6.194 27 O -0.148 6.148 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.386 0.614 40 H 0.270 0.730 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.160 0.840 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.430 2.860 -11.042 11.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.018 3.982 3 C -0.205 4.205 4 O -0.173 6.173 5 C 0.239 3.761 6 N -0.293 5.293 7 C 0.173 3.827 8 N -0.168 5.168 9 C -0.081 4.081 10 C -0.161 4.161 11 C 0.205 3.795 12 O -0.402 6.402 13 C -0.572 4.572 14 H 0.081 0.919 15 C -0.131 4.131 16 N -0.538 5.538 17 Si 0.729 3.271 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.075 4.075 22 C -0.247 4.247 23 C 0.010 3.990 24 C -0.258 4.258 25 N 0.566 4.434 26 O -0.401 6.401 27 O -0.367 6.367 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.238 0.762 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.177 0.823 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.611 3.008 -10.387 10.832 hybrid contribution 0.014 -0.502 0.516 0.720 sum 0.625 2.506 -9.871 10.204 Atomic orbital electron populations 1.22210 0.94216 1.03118 1.02948 1.22637 0.94974 0.93261 0.87337 1.21889 1.02111 0.93266 1.03226 1.86598 1.77532 1.14105 1.39028 1.19191 0.84482 0.85747 0.86650 1.67752 1.28098 1.11505 1.21989 1.20358 0.82741 0.85712 0.93904 1.61788 1.25994 1.27736 1.01248 1.23525 0.87704 0.98656 0.98228 1.23148 1.01327 1.02008 0.89629 1.19305 0.88256 0.83390 0.88554 1.86096 1.68494 1.45892 1.39704 1.21598 0.92946 1.45727 0.96924 0.91868 1.25000 0.96137 0.93928 0.98037 1.69580 1.18423 1.47304 1.18540 0.86482 0.82052 0.78952 0.79565 1.20031 1.21094 1.20025 1.23048 1.00919 0.93665 0.89902 1.21490 1.09201 1.02522 0.91480 1.21127 0.89193 0.90229 0.98500 1.20977 1.25183 0.94077 0.85542 1.43100 0.97602 1.00979 1.01694 1.94490 1.49246 1.67547 1.28770 1.94574 1.55237 0.96693 1.90158 0.90455 0.91818 0.91984 0.88487 0.90109 0.91731 0.91284 0.89910 0.92844 0.90443 0.90553 0.76179 0.92032 0.90280 0.89462 0.82255 0.81546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.53 37.16 0.35 -1.63 16 2 C 0.07 0.96 3.11 -26.73 -0.08 0.87 16 3 C -0.15 -1.55 9.56 37.16 0.36 -1.20 16 4 O -0.27 -4.05 7.78 -40.82 -0.32 -4.37 16 5 C 0.42 6.56 7.44 -17.14 -0.13 6.44 16 6 N -0.56 -8.97 6.42 -12.51 -0.08 -9.05 16 7 C 0.41 6.25 6.21 -155.01 -0.96 5.29 16 8 N -0.45 -7.70 5.30 -169.27 -0.90 -8.60 16 9 C 0.04 0.69 6.05 -1.90 -0.01 0.68 16 10 C -0.12 -2.46 5.50 -24.87 -0.14 -2.59 16 11 C 0.25 5.50 0.99 -90.44 -0.09 5.41 16 12 O -0.59 -14.12 12.93 -35.23 -0.46 -14.58 16 13 C -0.53 -13.21 8.10 -34.44 -0.28 -13.49 16 14 H 0.06 1.57 7.34 -52.49 -0.39 1.19 16 15 C 0.07 1.75 5.26 -17.82 -0.09 1.66 16 16 N -0.90 -22.22 10.88 55.43 0.60 -21.61 16 17 Si 0.90 19.51 29.54 -169.99 -5.02 14.49 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 19 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 21 C 0.05 1.00 5.82 -2.78 -0.02 0.98 16 22 C -0.22 -2.72 9.45 -39.21 -0.37 -3.09 16 23 C 0.04 0.42 9.66 -39.35 -0.38 0.04 16 24 C -0.17 -2.47 6.89 -79.62 -0.55 -3.02 16 25 N 0.05 0.83 4.45 34.12 0.15 0.98 16 26 O -0.19 -3.05 18.52 -29.46 -0.55 -3.60 16 27 O -0.15 -2.50 17.26 -36.49 -0.63 -3.13 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.10 1.42 6.98 -51.93 -0.36 1.06 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.87 8.00 -51.93 -0.42 0.45 16 37 H 0.08 1.62 8.05 -51.93 -0.42 1.20 16 38 H 0.08 1.62 7.86 -51.93 -0.41 1.21 16 39 H 0.39 9.42 7.05 45.56 0.32 9.74 16 40 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 41 H 0.08 1.60 6.32 -51.93 -0.33 1.27 16 42 H 0.09 1.78 7.39 -51.92 -0.38 1.40 16 43 H 0.16 1.53 8.05 -52.49 -0.42 1.11 16 44 H 0.17 1.51 7.69 -52.48 -0.40 1.11 16 LS Contribution 367.99 15.07 5.55 5.55 Total: -1.00 -26.71 367.99 -9.33 -36.04 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -5.30 Total: 11.53 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -2.39 Total: -3.66 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: -0.22 Total: -38.28 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -1.95 Total: -25.67 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -26.71 -9.33 -36.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594585593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.295 kcal (2) G-P(sol) polarization free energy of solvation -26.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds