Wall clock time and date at job start Tue Mar 31 2020 22:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46502 * 109.47483 * 2 1 4 4 C 1.46499 * 119.99786 * 270.00301 * 3 2 1 5 5 C 1.50695 * 109.47087 * 269.99367 * 4 3 2 6 6 H 1.08004 * 120.00351 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99926 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00076 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00121 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47064 * 89.99942 * 9 7 5 11 11 H 1.48495 * 109.47562 * 210.00432 * 9 7 5 12 12 H 1.48503 * 109.47007 * 330.00569 * 9 7 5 13 13 C 1.34776 * 119.99668 * 89.99709 * 3 2 1 14 14 O 1.21282 * 119.99653 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00315 * 0.02562 * 13 3 2 16 16 O 1.42902 * 109.47168 * 179.97438 * 15 13 3 17 17 C 1.35736 * 116.99869 * 179.97438 * 16 15 13 18 18 C 1.39284 * 120.84693 * 270.02236 * 17 16 15 19 19 C 1.50704 * 120.45204 * 0.02562 * 18 17 16 20 20 C 1.37946 * 119.09626 * 179.97438 * 18 17 16 21 21 C 1.50706 * 119.59376 * 179.97438 * 20 18 17 22 22 N 1.31974 * 120.82397 * 0.02562 * 20 18 17 23 23 C 1.31956 * 121.85851 * 359.70290 * 22 20 18 24 24 C 1.37985 * 120.82358 * 0.58805 * 23 22 20 25 25 N 1.48007 * 120.45705 * 179.70383 * 24 23 22 26 26 O 1.21803 * 119.99745 * 359.72041 * 25 24 23 27 27 O 1.21799 * 120.00052 * 179.44944 * 25 24 23 28 28 H 1.08998 * 109.47154 * 59.99905 * 1 2 3 29 29 H 1.09001 * 109.47203 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47089 * 299.99873 * 1 2 3 31 31 H 1.09004 * 109.47089 * 240.00127 * 2 1 3 32 32 H 1.09007 * 109.47401 * 120.00184 * 2 1 3 33 33 H 1.08997 * 109.47296 * 29.99769 * 4 3 2 34 34 H 1.09001 * 109.46784 * 149.99691 * 4 3 2 35 35 H 0.97004 * 120.00172 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47186 * 59.99547 * 15 13 3 37 37 H 1.08996 * 109.46970 * 300.00302 * 15 13 3 38 38 H 1.09001 * 109.46976 * 90.00432 * 19 18 17 39 39 H 1.09000 * 109.47023 * 209.99803 * 19 18 17 40 40 H 1.08996 * 109.47537 * 329.99886 * 19 18 17 41 41 H 1.09001 * 109.46905 * 89.99593 * 21 20 18 42 42 H 1.08995 * 109.47137 * 210.00280 * 21 20 18 43 43 H 1.08995 * 109.46602 * 330.00360 * 21 20 18 44 44 H 1.08004 * 119.58717 * 180.30999 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3427 1.2302 -1.0962 7 6 4.1493 2.3904 -2.8775 8 7 3.3496 3.1273 -3.6171 9 14 5.9133 2.0964 -3.4171 10 1 5.9759 0.8759 -4.2607 11 1 6.3929 3.2640 -4.1993 12 1 6.7735 1.9154 -2.2202 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9922 1.3059 2.4723 16 8 2.3022 2.1813 3.5585 17 6 2.1292 1.6921 4.8128 18 6 0.9107 1.8334 5.4727 19 6 -0.2434 2.5344 4.8036 20 6 0.7746 1.3220 6.7466 21 6 -0.5387 1.4691 7.4712 22 7 1.7803 0.7063 7.3392 23 6 2.9477 0.5483 6.7448 24 6 3.1654 1.0367 5.4728 25 7 4.4801 0.8605 4.8163 26 8 5.3807 0.2855 5.4011 27 8 4.6600 1.2862 3.6894 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5817 1.6877 -2.0283 34 1 2.0955 3.1410 -1.1384 35 1 3.6756 3.5178 -4.4430 36 1 2.6226 0.4186 2.5299 37 1 0.9444 1.0114 2.5302 38 1 -0.8381 1.8078 4.2499 39 1 -0.8659 3.0124 5.5600 40 1 0.1388 3.2898 4.1172 41 1 -1.1725 0.6096 7.2526 42 1 -0.3573 1.5233 8.5445 43 1 -1.0360 2.3807 7.1402 44 1 3.7442 0.0340 7.2622 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594903810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:19 Heat of formation + Delta-G solvation = -31.738999 kcal Electronic energy + Delta-G solvation = -30059.398123 eV Core-core repulsion = 25788.423510 eV Total energy + Delta-G solvation = -4270.974613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.42352 -41.11614 -39.53606 -38.19263 -36.45277 -35.36657 -34.70880 -33.06300 -32.75574 -30.22735 -29.73951 -29.23866 -27.70302 -26.42066 -25.81754 -23.28069 -23.09908 -22.55359 -22.13051 -19.28842 -19.02875 -18.79745 -18.07293 -17.67964 -17.56807 -16.60239 -16.38039 -16.02061 -15.54901 -15.25799 -15.12782 -14.50407 -14.38516 -14.02360 -13.70000 -13.57385 -13.44388 -13.36888 -13.03980 -12.90406 -12.75034 -12.20250 -12.13825 -12.07361 -11.72575 -11.57251 -11.38151 -11.22809 -11.07756 -10.95287 -10.84313 -10.56573 -10.46181 -10.40027 -10.27514 -10.11070 -9.66660 -9.62971 -9.01457 -8.41505 -7.76189 -6.02936 -4.07250 -0.56870 0.20161 1.05455 1.20381 2.52017 2.90350 3.22845 3.34326 3.41380 3.45531 3.48687 3.68278 3.86742 3.91487 4.19977 4.45422 4.49236 4.70895 4.76861 4.79345 4.83893 4.91841 4.99333 5.07220 5.18324 5.24972 5.29659 5.32384 5.39427 5.49212 5.51691 5.62361 5.80451 5.88053 6.12288 6.21933 6.34953 6.69545 6.99761 7.01998 7.39119 7.48578 7.59096 7.93708 8.22744 8.28143 8.86481 9.01525 9.58132 11.05254 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.014797 B = 0.003354 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.815526 B = 8345.141095 C = 9484.756580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.250 3.750 5 C -0.527 4.527 6 H 0.060 0.940 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.271 1.271 13 C 0.514 3.486 14 O -0.510 6.510 15 C 0.059 3.941 16 O -0.287 6.287 17 C 0.217 3.783 18 C -0.158 4.158 19 C -0.116 4.116 20 C 0.183 3.817 21 C -0.114 4.114 22 N -0.476 5.476 23 C 0.185 3.815 24 C -0.130 4.130 25 N 0.030 4.970 26 O -0.167 6.167 27 O -0.118 6.118 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.035 0.965 34 H 0.045 0.955 35 H 0.263 0.737 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.020 -7.960 21.101 25.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.131 3.869 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.196 1.196 13 C 0.298 3.702 14 O -0.384 6.384 15 C -0.018 4.018 16 O -0.202 6.202 17 C 0.163 3.837 18 C -0.161 4.161 19 C -0.173 4.173 20 C 0.047 3.953 21 C -0.171 4.171 22 N -0.186 5.186 23 C 0.025 3.975 24 C -0.217 4.217 25 N 0.551 4.449 26 O -0.378 6.378 27 O -0.340 6.340 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -12.494 -7.283 22.032 26.354 hybrid contribution 1.583 -0.177 -1.326 2.072 sum -10.911 -7.460 20.706 24.565 Atomic orbital electron populations 1.22243 0.96618 1.01579 1.02402 1.21484 0.93589 0.84217 1.02947 1.48185 1.64092 1.13231 1.07106 1.19325 0.96544 0.93641 0.77370 1.21453 0.96846 1.32009 1.06310 0.92192 1.24918 0.97920 0.94801 0.96361 1.69929 1.35776 1.33434 1.14368 0.86494 0.84701 0.77603 0.78699 1.20684 1.21110 1.19597 1.19425 0.79797 0.87122 0.83830 1.90734 1.43781 1.17449 1.86451 1.22772 1.00726 0.92901 0.85411 1.86061 1.86970 1.37859 1.09269 1.18748 0.89743 0.87530 0.87689 1.21228 0.95571 1.02931 0.96384 1.20856 0.94362 1.00712 1.01350 1.21633 0.95436 0.88505 0.89736 1.20975 0.90852 1.03978 1.01279 1.67999 0.99171 1.16496 1.34968 1.22789 0.95330 0.91251 0.88135 1.22981 0.87220 1.12534 0.98935 1.43254 1.01647 0.98888 1.01117 1.94519 1.35302 1.41759 1.66257 1.94756 1.87541 1.49435 1.02313 0.91594 0.91978 0.93352 0.89274 0.92213 0.94697 0.93711 0.92728 0.90036 0.90093 0.89976 0.89681 0.89377 0.88869 0.89321 0.89154 0.79517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.24 37.15 0.38 -1.66 16 2 C 0.10 1.55 5.93 -4.04 -0.02 1.52 16 3 N -0.59 -12.21 2.46 -175.06 -0.43 -12.64 16 4 C 0.25 6.40 5.16 -5.20 -0.03 6.38 16 5 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 6 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 9 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.51 10.77 7.75 -10.99 -0.09 10.68 16 14 O -0.51 -13.22 16.08 -14.35 -0.23 -13.45 16 15 C 0.06 0.91 4.49 36.01 0.16 1.08 16 16 O -0.29 -4.71 7.25 -49.04 -0.36 -5.06 16 17 C 0.22 2.85 5.74 -38.82 -0.22 2.63 16 18 C -0.16 -1.53 5.91 -104.34 -0.62 -2.14 16 19 C -0.12 -0.86 9.42 36.01 0.34 -0.52 16 20 C 0.18 1.51 6.78 -82.64 -0.56 0.95 16 21 C -0.11 -0.50 9.77 36.01 0.35 -0.15 16 22 N -0.48 -4.57 10.27 -9.55 -0.10 -4.67 16 23 C 0.18 1.91 10.71 -17.59 -0.19 1.72 16 24 C -0.13 -1.71 6.89 -79.67 -0.55 -2.26 16 25 N 0.03 0.49 4.45 34.10 0.15 0.64 16 26 O -0.17 -2.59 18.48 -29.46 -0.54 -3.14 16 27 O -0.12 -2.27 16.29 -36.32 -0.59 -2.86 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.53 7.22 -51.93 -0.38 0.15 16 31 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 32 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 33 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.08 1.21 6.79 -51.93 -0.35 0.85 16 37 H 0.08 0.95 7.19 -51.93 -0.37 0.57 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.40 5.96 -51.93 -0.31 0.09 16 40 H 0.09 0.86 7.62 -51.93 -0.40 0.46 16 41 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.09 0.26 5.94 -51.93 -0.31 -0.05 16 44 H 0.19 1.52 7.62 -52.48 -0.40 1.12 16 LS Contribution 378.21 15.07 5.70 5.70 Total: -1.00 -36.11 378.21 -7.87 -43.98 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -5.73 Total: -4.42 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -1.46 Total: 4.58 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.36 Total: -42.52 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -1.72 Total: -24.51 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.11 -7.87 -43.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594903810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.244 kcal (2) G-P(sol) polarization free energy of solvation -36.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds