Wall clock time and date at job start Tue Mar 31 2020 22:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46502 * 109.47483 * 2 1 4 4 C 1.46499 * 119.99786 * 270.00301 * 3 2 1 5 5 C 1.50695 * 109.47087 * 269.99367 * 4 3 2 6 6 H 1.08004 * 120.00351 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99926 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00076 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00121 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47064 * 89.99942 * 9 7 5 11 11 H 1.48495 * 109.47562 * 210.00432 * 9 7 5 12 12 H 1.48503 * 109.47007 * 330.00569 * 9 7 5 13 13 C 1.34776 * 119.99668 * 89.99709 * 3 2 1 14 14 O 1.21282 * 119.99653 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00315 * 0.02562 * 13 3 2 16 16 O 1.42902 * 109.47168 * 179.97438 * 15 13 3 17 17 C 1.35736 * 116.99869 * 179.97438 * 16 15 13 18 18 C 1.39284 * 120.84693 * 270.02236 * 17 16 15 19 19 C 1.50704 * 120.45204 * 0.02562 * 18 17 16 20 20 C 1.37946 * 119.09626 * 179.97438 * 18 17 16 21 21 C 1.50706 * 119.59376 * 179.97438 * 20 18 17 22 22 N 1.31974 * 120.82397 * 0.02562 * 20 18 17 23 23 C 1.31956 * 121.85851 * 359.70290 * 22 20 18 24 24 C 1.37985 * 120.82358 * 0.58805 * 23 22 20 25 25 N 1.48007 * 120.45705 * 179.70383 * 24 23 22 26 26 O 1.21803 * 119.99745 * 359.72041 * 25 24 23 27 27 O 1.21799 * 120.00052 * 179.44944 * 25 24 23 28 28 H 1.08998 * 109.47154 * 59.99905 * 1 2 3 29 29 H 1.09001 * 109.47203 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47089 * 299.99873 * 1 2 3 31 31 H 1.09004 * 109.47089 * 240.00127 * 2 1 3 32 32 H 1.09007 * 109.47401 * 120.00184 * 2 1 3 33 33 H 1.08997 * 109.47296 * 29.99769 * 4 3 2 34 34 H 1.09001 * 109.46784 * 149.99691 * 4 3 2 35 35 H 0.97004 * 120.00172 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47186 * 59.99547 * 15 13 3 37 37 H 1.08996 * 109.46970 * 300.00302 * 15 13 3 38 38 H 1.09001 * 109.46976 * 90.00432 * 19 18 17 39 39 H 1.09000 * 109.47023 * 209.99803 * 19 18 17 40 40 H 1.08996 * 109.47537 * 329.99886 * 19 18 17 41 41 H 1.09001 * 109.46905 * 89.99593 * 21 20 18 42 42 H 1.08995 * 109.47137 * 210.00280 * 21 20 18 43 43 H 1.08995 * 109.46602 * 330.00360 * 21 20 18 44 44 H 1.08004 * 119.58717 * 180.30999 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3427 1.2302 -1.0962 7 6 4.1493 2.3904 -2.8775 8 7 3.3496 3.1273 -3.6171 9 14 5.9133 2.0964 -3.4171 10 1 5.9759 0.8759 -4.2607 11 1 6.3929 3.2640 -4.1993 12 1 6.7735 1.9154 -2.2202 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9922 1.3059 2.4723 16 8 2.3022 2.1813 3.5585 17 6 2.1292 1.6921 4.8128 18 6 0.9107 1.8334 5.4727 19 6 -0.2434 2.5344 4.8036 20 6 0.7746 1.3220 6.7466 21 6 -0.5387 1.4691 7.4712 22 7 1.7803 0.7063 7.3392 23 6 2.9477 0.5483 6.7448 24 6 3.1654 1.0367 5.4728 25 7 4.4801 0.8605 4.8163 26 8 5.3807 0.2855 5.4011 27 8 4.6600 1.2862 3.6894 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5817 1.6877 -2.0283 34 1 2.0955 3.1410 -1.1384 35 1 3.6756 3.5178 -4.4430 36 1 2.6226 0.4186 2.5299 37 1 0.9444 1.0114 2.5302 38 1 -0.8381 1.8078 4.2499 39 1 -0.8659 3.0124 5.5600 40 1 0.1388 3.2898 4.1172 41 1 -1.1725 0.6096 7.2526 42 1 -0.3573 1.5233 8.5445 43 1 -1.0360 2.3807 7.1402 44 1 3.7442 0.0340 7.2622 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594903810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:18 Heat of formation + Delta-G solvation = -54.800163 kcal Electronic energy + Delta-G solvation = -30060.398131 eV Core-core repulsion = 25788.423510 eV Total energy + Delta-G solvation = -4271.974621 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.50466 -42.07709 -40.96680 -39.45085 -37.66687 -37.04006 -35.41746 -34.96021 -33.88167 -31.74348 -30.62806 -30.37966 -28.78565 -27.98797 -26.74509 -24.96253 -24.26248 -23.77600 -23.08286 -20.39152 -20.32024 -20.09260 -19.11562 -18.78142 -18.64012 -18.58232 -17.96128 -17.36750 -16.75386 -16.66583 -16.08028 -16.01561 -15.33232 -15.09354 -15.02751 -14.74959 -14.27504 -14.26063 -14.02536 -13.92254 -13.65535 -13.48463 -13.46008 -13.28690 -13.10141 -12.84462 -12.69329 -12.65185 -12.53956 -12.50315 -12.35913 -12.20997 -12.00353 -11.74712 -11.50985 -11.30373 -11.15503 -10.73644 -10.64708 -10.37844 -9.54904 -8.24450 -6.38076 -1.57277 -0.61932 -0.03103 0.16711 1.34613 1.38476 1.44702 1.51241 1.63374 2.02090 2.35310 2.48547 2.80423 2.93799 3.05646 3.06442 3.39499 3.42749 3.64347 3.72726 3.84528 4.02468 4.08556 4.19113 4.35211 4.50086 4.55878 4.63273 4.68223 4.74957 4.85891 4.90621 4.93657 5.01708 5.03160 5.06646 5.18457 5.33838 5.35821 5.52985 5.70116 5.82311 6.04328 6.23550 6.32198 6.60715 6.71110 7.22431 7.37063 8.82748 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.014797 B = 0.003354 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.815526 B = 8345.141095 C = 9484.756580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.092 3.908 3 N -0.596 5.596 4 C 0.266 3.734 5 C -0.546 4.546 6 H 0.049 0.951 7 C 0.012 3.988 8 N -0.925 5.925 9 Si 0.963 3.037 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.505 3.495 14 O -0.576 6.576 15 C 0.078 3.922 16 O -0.316 6.316 17 C 0.190 3.810 18 C -0.151 4.151 19 C -0.117 4.117 20 C 0.199 3.801 21 C -0.115 4.115 22 N -0.476 5.476 23 C 0.197 3.803 24 C -0.148 4.148 25 N 0.037 4.963 26 O -0.133 6.133 27 O -0.213 6.213 28 H 0.045 0.955 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.033 0.967 34 H -0.001 1.001 35 H 0.268 0.732 36 H 0.087 0.913 37 H 0.126 0.874 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.059 0.941 41 H 0.117 0.883 42 H 0.096 0.904 43 H 0.111 0.889 44 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.139 -10.251 23.992 29.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.030 4.030 3 N -0.328 5.328 4 C 0.145 3.855 5 C -0.585 4.585 6 H 0.067 0.933 7 C -0.188 4.188 8 N -0.565 5.565 9 Si 0.787 3.213 10 H -0.185 1.185 11 H -0.204 1.204 12 H -0.203 1.203 13 C 0.292 3.708 14 O -0.455 6.455 15 C 0.001 3.999 16 O -0.231 6.231 17 C 0.137 3.863 18 C -0.154 4.154 19 C -0.174 4.174 20 C 0.063 3.937 21 C -0.171 4.171 22 N -0.187 5.187 23 C 0.038 3.962 24 C -0.236 4.236 25 N 0.551 4.449 26 O -0.359 6.359 27 O -0.414 6.414 28 H 0.064 0.936 29 H 0.117 0.883 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.051 0.949 34 H 0.018 0.982 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.144 0.856 38 H 0.122 0.878 39 H 0.136 0.864 40 H 0.078 0.922 41 H 0.135 0.865 42 H 0.115 0.885 43 H 0.129 0.871 44 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -14.677 -9.550 24.770 30.334 hybrid contribution 2.137 0.466 -1.935 2.920 sum -12.540 -9.085 22.834 27.590 Atomic orbital electron populations 1.22174 0.93554 1.03918 1.02249 1.21862 0.96084 0.81022 1.03990 1.48178 1.63873 1.15171 1.05615 1.18752 0.95345 0.91649 0.79742 1.21713 0.98048 1.32166 1.06562 0.93288 1.25778 1.02174 0.94399 0.96399 1.70029 1.37645 1.34020 1.14797 0.85486 0.79263 0.78406 0.78124 1.18463 1.20398 1.20339 1.20384 0.78216 0.86595 0.85646 1.90686 1.46673 1.20484 1.87639 1.22522 1.03209 0.91520 0.82632 1.86009 1.87699 1.38750 1.10685 1.19100 0.91300 0.89172 0.86679 1.21494 0.94739 1.02422 0.96727 1.20989 0.93958 1.00507 1.01913 1.22349 0.96476 0.85921 0.88912 1.21221 0.88719 1.05916 1.01245 1.68185 0.99099 1.16824 1.34595 1.23168 0.96203 0.90085 0.86754 1.23153 0.85476 1.14959 1.00010 1.43641 1.02671 0.97890 1.00692 1.94447 1.36375 1.39617 1.65420 1.94784 1.88792 1.53494 1.04333 0.93560 0.88263 0.91748 0.90270 0.89186 0.94945 0.98240 0.92317 0.89463 0.85609 0.87818 0.86362 0.92233 0.86491 0.88507 0.87083 0.77453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 10.24 71.98 0.74 -2.80 16 2 C 0.09 2.76 5.93 86.38 0.51 3.27 16 3 N -0.60 -25.67 2.46 -826.17 -2.03 -27.70 16 4 C 0.27 14.53 5.16 85.63 0.44 14.98 16 5 C -0.55 -32.61 9.39 25.60 0.24 -32.37 16 6 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 7 C 0.01 0.70 5.46 84.66 0.46 1.16 16 8 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 9 Si 0.96 46.72 29.54 68.60 2.03 48.74 16 10 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 13 C 0.50 22.30 7.75 87.66 0.68 22.98 16 14 O -0.58 -32.36 16.08 16.00 0.26 -32.10 16 15 C 0.08 2.43 4.49 71.24 0.32 2.75 16 16 O -0.32 -10.75 7.25 -61.80 -0.45 -11.19 16 17 C 0.19 4.89 5.74 22.76 0.13 5.02 16 18 C -0.15 -2.51 5.91 -19.68 -0.12 -2.62 16 19 C -0.12 -1.38 9.42 71.24 0.67 -0.71 16 20 C 0.20 2.51 6.78 42.47 0.29 2.79 16 21 C -0.11 -0.39 9.77 71.24 0.70 0.30 16 22 N -0.48 -7.48 10.27 -184.12 -1.89 -9.37 16 23 C 0.20 3.60 10.71 84.61 0.91 4.51 16 24 C -0.15 -3.81 6.89 36.56 0.25 -3.56 16 25 N 0.04 1.21 4.45 -46.04 -0.21 1.01 16 26 O -0.13 -4.08 18.48 18.88 0.35 -3.73 16 27 O -0.21 -8.84 16.29 25.45 0.41 -8.43 16 28 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.21 7.22 -2.38 -0.02 1.19 16 31 H 0.08 2.52 8.07 -2.38 -0.02 2.50 16 32 H 0.09 2.15 6.44 -2.38 -0.02 2.13 16 33 H 0.03 1.76 8.07 -2.39 -0.02 1.74 16 34 H 0.00 -0.03 7.42 -2.39 -0.02 -0.05 16 35 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.09 2.62 6.79 -2.39 -0.02 2.60 16 37 H 0.13 2.67 7.19 -2.39 -0.02 2.65 16 38 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.12 0.57 5.96 -2.39 -0.01 0.56 16 40 H 0.06 1.10 7.62 -2.39 -0.02 1.09 16 41 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 42 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.11 -0.01 5.94 -2.39 -0.01 -0.03 16 44 H 0.21 2.78 7.62 -2.91 -0.02 2.76 16 Total: -1.00 -87.60 378.21 6.02 -81.58 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: 1.04 Total: 1.92 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 6.22 Total: 15.71 kcal Atomic # 7 Polarization: -88.66 SS G_CDS: -3.84 Total: -92.50 kcal Atomic # 8 Polarization: -56.03 SS G_CDS: 0.57 Total: -55.46 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Total: -87.60 6.02 -81.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594903810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.781 kcal (2) G-P(sol) polarization free energy of solvation -87.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds