Wall clock time and date at job start Tue Mar 31 2020 22:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47357 * 2 1 4 4 C 1.46500 * 120.00065 * 274.46196 * 3 2 1 5 5 C 1.50697 * 109.47253 * 264.80600 * 4 3 2 6 6 H 1.08007 * 119.99958 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00503 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99613 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00189 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47261 * 90.00124 * 9 7 5 11 11 H 1.48501 * 109.46902 * 209.99824 * 9 7 5 12 12 H 1.48495 * 109.47190 * 329.99705 * 9 7 5 13 13 C 1.34772 * 120.00219 * 94.45764 * 3 2 1 14 14 O 1.21362 * 119.99953 * 354.64933 * 13 3 2 15 15 C 1.49373 * 120.00205 * 174.64747 * 13 3 2 16 16 O 1.21355 * 120.00268 * 354.42124 * 15 13 3 17 17 N 1.34786 * 119.99929 * 174.42398 * 15 13 3 18 18 C 1.39403 * 119.99754 * 185.02420 * 17 15 13 19 19 C 1.39612 * 120.83182 * 34.84886 * 18 17 15 20 20 C 1.37801 * 119.19128 * 180.31233 * 19 18 17 21 21 N 1.32048 * 120.91457 * 359.65926 * 20 19 18 22 22 C 1.32340 * 121.83313 * 0.02562 * 21 20 19 23 23 O 1.35685 * 119.65273 * 180.02562 * 22 21 20 24 24 C 1.42899 * 116.99632 * 0.02562 * 23 22 21 25 25 C 1.52997 * 109.46933 * 180.02562 * 24 23 22 26 26 O 1.42904 * 109.46791 * 65.00545 * 25 24 23 27 27 C 1.38664 * 120.70287 * 0.02562 * 22 21 20 28 28 H 1.09001 * 109.46917 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47313 * 300.00204 * 1 2 3 30 30 H 1.08998 * 109.46610 * 60.00330 * 1 2 3 31 31 H 1.09001 * 109.47313 * 239.99795 * 2 1 3 32 32 H 1.09002 * 109.47079 * 119.99756 * 2 1 3 33 33 H 1.08996 * 109.47402 * 24.80636 * 4 3 2 34 34 H 1.09004 * 109.47200 * 144.80923 * 4 3 2 35 35 H 0.96998 * 120.00071 * 179.97438 * 8 7 5 36 36 H 0.97000 * 119.99870 * 5.02690 * 17 15 13 37 37 H 1.07996 * 120.40532 * 0.02562 * 19 18 17 38 38 H 1.08002 * 119.53995 * 179.67491 * 20 19 18 39 39 H 1.09002 * 109.47146 * 300.00303 * 24 23 22 40 40 H 1.08998 * 109.47221 * 60.00598 * 24 23 22 41 41 H 1.09002 * 109.46954 * 184.99778 * 25 24 23 42 42 H 1.08992 * 109.47807 * 305.00169 * 25 24 23 43 43 H 0.96704 * 113.99486 * 180.02562 * 26 25 24 44 44 H 1.08005 * 120.48841 * 179.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1695 2.1047 -1.2649 5 6 3.5932 1.9858 -1.7446 6 1 4.3133 1.4269 -1.1654 7 6 3.9762 2.5898 -2.9234 8 7 3.0990 3.2691 -3.6294 9 14 5.7408 2.4418 -3.5182 10 1 5.8734 1.2400 -4.3804 11 1 6.1035 3.6526 -4.2977 12 1 6.6482 2.3153 -2.3496 13 6 2.3286 1.9863 1.1636 14 8 2.1123 1.4233 2.2168 15 6 2.9385 3.3497 1.1570 16 8 3.2482 3.8709 0.1058 17 7 3.1451 4.0012 2.3188 18 6 3.6163 5.3132 2.3079 19 6 3.2314 6.2034 1.3036 20 6 3.7227 7.4907 1.3221 21 7 4.5427 7.8902 2.2769 22 6 4.9274 7.0807 3.2506 23 8 5.7712 7.5380 4.2098 24 6 6.1990 8.8972 4.1030 25 6 7.1390 9.2287 5.2639 26 8 8.3301 8.4474 5.1501 27 6 4.4774 5.7701 3.3011 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.4983 1.6779 -2.0101 34 1 1.9236 3.1558 -1.1139 35 1 3.3685 3.6943 -4.4585 36 1 2.9659 3.5572 3.1623 37 1 2.5605 5.8857 0.5192 38 1 3.4328 8.1825 0.5451 39 1 6.7243 9.0398 3.1586 40 1 5.3308 9.5553 4.1389 41 1 7.3948 10.2878 5.2331 42 1 6.6443 9.0016 6.2082 43 1 8.9731 8.6059 5.8549 44 1 4.7939 5.1123 4.0971 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595006340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:55 Heat of formation + Delta-G solvation = -97.906244 kcal Electronic energy + Delta-G solvation = -29135.589917 eV Core-core repulsion = 24861.746077 eV Total energy + Delta-G solvation = -4273.843840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.93734 -40.05202 -38.60916 -37.71602 -36.68405 -35.85634 -34.63715 -32.67843 -31.26509 -30.66701 -30.48878 -29.33686 -27.13530 -25.36155 -23.65595 -23.43675 -23.09650 -22.38548 -21.15696 -19.44693 -18.66857 -17.94203 -17.26843 -16.85659 -16.55684 -16.26607 -15.96660 -15.76129 -15.39270 -15.12597 -14.98295 -14.69751 -14.36530 -14.28751 -13.87759 -13.71848 -13.43662 -13.17331 -13.02663 -12.89555 -12.38162 -12.02731 -12.01701 -11.73133 -11.65586 -11.63900 -11.13541 -10.98169 -10.87974 -10.69943 -10.64372 -10.47010 -10.41736 -10.01207 -9.72163 -9.67038 -8.81524 -8.62956 -8.35548 -8.34291 -7.93456 -6.05260 -4.06815 1.15829 1.35595 2.10883 2.59532 3.09716 3.30628 3.37796 3.42346 3.70624 3.89836 3.96577 4.01814 4.39219 4.44628 4.73367 4.85100 4.87431 4.98589 5.09744 5.25497 5.28074 5.31926 5.37082 5.48590 5.53129 5.64678 5.65343 5.75926 5.91876 6.11855 6.20644 6.22605 6.25499 6.51510 6.62798 6.72710 7.23198 7.24961 7.29328 7.32223 7.43859 7.83367 7.96110 8.01177 8.14388 8.23125 8.57237 8.92120 9.56022 11.03714 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.011567 B = 0.003125 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.035619 B = 8958.824739 C =10366.916061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.111 3.889 3 N -0.557 5.557 4 C 0.231 3.769 5 C -0.513 4.513 6 H 0.054 0.946 7 C 0.070 3.930 8 N -0.891 5.891 9 Si 0.893 3.107 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.276 1.276 13 C 0.508 3.492 14 O -0.559 6.559 15 C 0.487 3.513 16 O -0.417 6.417 17 N -0.661 5.661 18 C 0.239 3.761 19 C -0.207 4.207 20 C 0.157 3.843 21 N -0.558 5.558 22 C 0.336 3.664 23 O -0.300 6.300 24 C 0.072 3.928 25 C 0.076 3.924 26 O -0.566 6.566 27 C -0.224 4.224 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.035 0.965 34 H 0.059 0.941 35 H 0.262 0.738 36 H 0.420 0.580 37 H 0.150 0.850 38 H 0.163 0.837 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.379 0.621 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.532 8.464 15.212 17.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.287 5.287 4 C 0.113 3.887 5 C -0.551 4.551 6 H 0.072 0.928 7 C -0.132 4.132 8 N -0.530 5.530 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.290 3.710 14 O -0.441 6.441 15 C 0.268 3.732 16 O -0.282 6.282 17 N -0.310 5.310 18 C 0.135 3.865 19 C -0.230 4.230 20 C 0.002 3.998 21 N -0.284 5.284 22 C 0.157 3.843 23 O -0.207 6.207 24 C -0.004 4.004 25 C -0.002 4.002 26 O -0.372 6.372 27 C -0.247 4.247 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.257 0.743 37 H 0.168 0.832 38 H 0.181 0.819 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.226 0.774 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.693 9.061 14.374 17.006 hybrid contribution 0.963 -0.660 0.273 1.199 sum 1.656 8.401 14.647 16.966 Atomic orbital electron populations 1.22104 0.96143 1.01666 1.02287 1.21450 0.94016 0.82605 1.03129 1.48302 1.58756 1.13538 1.08139 1.19883 0.97795 0.93078 0.77988 1.21166 0.94756 1.32841 1.06363 0.92804 1.24776 0.97235 0.94760 0.96437 1.69901 1.33998 1.33976 1.15133 0.86577 0.85136 0.77448 0.78721 1.20755 1.21119 1.20051 1.19647 0.80311 0.86349 0.84666 1.90660 1.55887 1.66538 1.30998 1.20544 0.81127 0.87800 0.83708 1.91054 1.42247 1.66144 1.28745 1.43235 1.65462 1.11559 1.10743 1.17591 0.90815 0.84036 0.94022 1.22062 1.05343 0.93784 1.01837 1.22219 0.90059 0.93826 0.93682 1.67318 1.18120 1.37784 1.05158 1.19327 0.88670 0.89185 0.87076 1.86249 1.59303 1.30004 1.45163 1.22639 0.97064 0.81276 0.99373 1.22278 0.85707 0.94405 0.97800 1.86608 1.29825 1.66958 1.53760 1.20607 1.03791 0.95610 1.04709 0.91976 0.92677 0.92189 0.89797 0.90517 0.94716 0.92299 0.92824 0.74251 0.83189 0.81948 0.90776 0.90121 0.91460 0.92617 0.77374 0.83971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 10.24 37.16 0.38 -2.01 16 2 C 0.11 1.90 6.11 -4.04 -0.02 1.88 16 3 N -0.56 -11.51 2.47 -175.60 -0.43 -11.95 16 4 C 0.23 5.57 4.77 -5.19 -0.02 5.55 16 5 C -0.51 -13.76 7.72 -34.44 -0.27 -14.03 16 6 H 0.05 1.48 7.81 -52.48 -0.41 1.07 16 7 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 8 N -0.89 -25.38 13.29 55.43 0.74 -24.65 16 9 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.51 10.29 7.68 -11.62 -0.09 10.20 16 14 O -0.56 -11.23 16.05 5.49 0.09 -11.14 16 15 C 0.49 9.63 7.45 -11.62 -0.09 9.54 16 16 O -0.42 -9.60 9.99 5.49 0.05 -9.54 16 17 N -0.66 -10.65 5.33 -10.15 -0.05 -10.70 16 18 C 0.24 3.82 6.28 -83.56 -0.52 3.29 16 19 C -0.21 -3.34 8.72 -39.23 -0.34 -3.68 16 20 C 0.16 2.27 11.17 -17.62 -0.20 2.07 16 21 N -0.56 -8.35 9.21 -13.41 -0.12 -8.48 16 22 C 0.34 5.08 7.48 -17.18 -0.13 4.95 16 23 O -0.30 -4.20 10.08 -23.61 -0.24 -4.44 16 24 C 0.07 0.79 5.69 37.16 0.21 1.00 16 25 C 0.08 0.60 7.43 37.16 0.28 0.88 16 26 O -0.57 -5.51 13.62 -40.09 -0.55 -6.05 16 27 C -0.22 -3.29 9.99 -39.08 -0.39 -3.68 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 32 H 0.08 1.28 7.37 -51.93 -0.38 0.90 16 33 H 0.03 0.86 8.03 -51.93 -0.42 0.45 16 34 H 0.06 1.53 5.93 -51.93 -0.31 1.22 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 36 H 0.42 5.78 8.30 -40.82 -0.34 5.44 16 37 H 0.15 2.60 6.63 -52.49 -0.35 2.25 16 38 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 39 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 40 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.38 1.70 9.12 45.56 0.42 2.11 16 44 H 0.14 1.82 8.06 -52.48 -0.42 1.40 16 LS Contribution 379.73 15.07 5.72 5.72 Total: -1.00 -33.65 379.73 -6.26 -39.91 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.15 Total: 6.75 kcal Atomic # 6 Polarization: 19.10 SS G_CDS: -1.30 Total: 17.79 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 0.13 Total: -55.78 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.64 Total: -31.17 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.65 -6.26 -39.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595006340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.996 kcal (2) G-P(sol) polarization free energy of solvation -33.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds