Wall clock time and date at job start Tue Mar 31 2020 22:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47357 * 2 1 4 4 C 1.46500 * 120.00065 * 274.46196 * 3 2 1 5 5 C 1.50697 * 109.47253 * 264.80600 * 4 3 2 6 6 H 1.08007 * 119.99958 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00503 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99613 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00189 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47261 * 90.00124 * 9 7 5 11 11 H 1.48501 * 109.46902 * 209.99824 * 9 7 5 12 12 H 1.48495 * 109.47190 * 329.99705 * 9 7 5 13 13 C 1.34772 * 120.00219 * 94.45764 * 3 2 1 14 14 O 1.21362 * 119.99953 * 354.64933 * 13 3 2 15 15 C 1.49373 * 120.00205 * 174.64747 * 13 3 2 16 16 O 1.21355 * 120.00268 * 354.42124 * 15 13 3 17 17 N 1.34786 * 119.99929 * 174.42398 * 15 13 3 18 18 C 1.39403 * 119.99754 * 185.02420 * 17 15 13 19 19 C 1.39612 * 120.83182 * 34.84886 * 18 17 15 20 20 C 1.37801 * 119.19128 * 180.31233 * 19 18 17 21 21 N 1.32048 * 120.91457 * 359.65926 * 20 19 18 22 22 C 1.32340 * 121.83313 * 0.02562 * 21 20 19 23 23 O 1.35685 * 119.65273 * 180.02562 * 22 21 20 24 24 C 1.42899 * 116.99632 * 0.02562 * 23 22 21 25 25 C 1.52997 * 109.46933 * 180.02562 * 24 23 22 26 26 O 1.42904 * 109.46791 * 65.00545 * 25 24 23 27 27 C 1.38664 * 120.70287 * 0.02562 * 22 21 20 28 28 H 1.09001 * 109.46917 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47313 * 300.00204 * 1 2 3 30 30 H 1.08998 * 109.46610 * 60.00330 * 1 2 3 31 31 H 1.09001 * 109.47313 * 239.99795 * 2 1 3 32 32 H 1.09002 * 109.47079 * 119.99756 * 2 1 3 33 33 H 1.08996 * 109.47402 * 24.80636 * 4 3 2 34 34 H 1.09004 * 109.47200 * 144.80923 * 4 3 2 35 35 H 0.96998 * 120.00071 * 179.97438 * 8 7 5 36 36 H 0.97000 * 119.99870 * 5.02690 * 17 15 13 37 37 H 1.07996 * 120.40532 * 0.02562 * 19 18 17 38 38 H 1.08002 * 119.53995 * 179.67491 * 20 19 18 39 39 H 1.09002 * 109.47146 * 300.00303 * 24 23 22 40 40 H 1.08998 * 109.47221 * 60.00598 * 24 23 22 41 41 H 1.09002 * 109.46954 * 184.99778 * 25 24 23 42 42 H 1.08992 * 109.47807 * 305.00169 * 25 24 23 43 43 H 0.96704 * 113.99486 * 180.02562 * 26 25 24 44 44 H 1.08005 * 120.48841 * 179.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1695 2.1047 -1.2649 5 6 3.5932 1.9858 -1.7446 6 1 4.3133 1.4269 -1.1654 7 6 3.9762 2.5898 -2.9234 8 7 3.0990 3.2691 -3.6294 9 14 5.7408 2.4418 -3.5182 10 1 5.8734 1.2400 -4.3804 11 1 6.1035 3.6526 -4.2977 12 1 6.6482 2.3153 -2.3496 13 6 2.3286 1.9863 1.1636 14 8 2.1123 1.4233 2.2168 15 6 2.9385 3.3497 1.1570 16 8 3.2482 3.8709 0.1058 17 7 3.1451 4.0012 2.3188 18 6 3.6163 5.3132 2.3079 19 6 3.2314 6.2034 1.3036 20 6 3.7227 7.4907 1.3221 21 7 4.5427 7.8902 2.2769 22 6 4.9274 7.0807 3.2506 23 8 5.7712 7.5380 4.2098 24 6 6.1990 8.8972 4.1030 25 6 7.1390 9.2287 5.2639 26 8 8.3301 8.4474 5.1501 27 6 4.4774 5.7701 3.3011 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.4983 1.6779 -2.0101 34 1 1.9236 3.1558 -1.1139 35 1 3.3685 3.6943 -4.4585 36 1 2.9659 3.5572 3.1623 37 1 2.5605 5.8857 0.5192 38 1 3.4328 8.1825 0.5451 39 1 6.7243 9.0398 3.1586 40 1 5.3308 9.5553 4.1389 41 1 7.3948 10.2878 5.2331 42 1 6.6443 9.0016 6.2082 43 1 8.9731 8.6059 5.8549 44 1 4.7939 5.1123 4.0971 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595006340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:54 Heat of formation + Delta-G solvation = -124.825772 kcal Electronic energy + Delta-G solvation = -29136.757235 eV Core-core repulsion = 24861.746077 eV Total energy + Delta-G solvation = -4275.011159 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.30646 -41.39986 -39.94186 -38.94805 -37.58153 -37.34038 -36.07390 -34.67537 -32.35643 -32.08242 -31.77698 -30.27259 -29.05951 -26.79963 -25.02099 -24.76066 -24.63068 -23.46659 -22.40831 -20.93400 -19.84728 -18.91582 -18.62203 -18.59322 -17.99588 -17.69902 -17.25187 -16.89371 -16.75143 -16.62714 -16.50819 -16.10825 -15.55287 -15.38838 -15.21764 -14.99883 -14.78306 -14.48766 -14.31732 -14.25082 -13.80794 -13.63746 -13.41979 -13.19056 -13.13836 -12.74589 -12.71868 -12.51844 -12.35663 -12.09743 -12.07561 -11.89764 -11.80577 -11.68336 -11.06481 -10.86654 -10.60018 -10.26458 -9.89799 -9.64187 -9.55687 -8.14472 -6.21244 -0.13749 0.14470 0.59820 1.22845 1.37012 1.40072 1.48047 1.99356 2.15977 2.39673 2.57792 2.73574 3.19993 3.28380 3.33218 3.34982 3.87072 4.00473 4.05585 4.08720 4.15981 4.22463 4.35397 4.40322 4.52070 4.52250 4.63139 4.74905 4.76208 4.77250 4.93008 4.98426 5.02352 5.03513 5.24597 5.34229 5.45650 5.56147 5.75831 5.99731 6.11081 6.19203 6.28472 6.68945 6.78460 6.81140 6.90627 7.01324 7.44213 8.93724 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.011567 B = 0.003125 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.035619 B = 8958.824739 C =10366.916061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.103 3.897 3 N -0.563 5.563 4 C 0.250 3.750 5 C -0.515 4.515 6 H 0.042 0.958 7 C 0.026 3.974 8 N -0.919 5.919 9 Si 0.946 3.054 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.282 1.282 13 C 0.507 3.493 14 O -0.556 6.556 15 C 0.489 3.511 16 O -0.457 6.457 17 N -0.643 5.643 18 C 0.224 3.776 19 C -0.222 4.222 20 C 0.160 3.840 21 N -0.559 5.559 22 C 0.329 3.671 23 O -0.308 6.308 24 C 0.062 3.938 25 C 0.079 3.921 26 O -0.597 6.597 27 C -0.220 4.220 28 H 0.094 0.906 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.025 0.975 34 H 0.040 0.960 35 H 0.263 0.737 36 H 0.431 0.569 37 H 0.134 0.866 38 H 0.189 0.811 39 H 0.058 0.942 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.068 0.932 43 H 0.400 0.600 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.163 8.687 16.599 18.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.018 4.018 3 N -0.294 5.294 4 C 0.130 3.870 5 C -0.553 4.553 6 H 0.061 0.939 7 C -0.174 4.174 8 N -0.559 5.559 9 Si 0.772 3.228 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.207 1.207 13 C 0.289 3.711 14 O -0.438 6.438 15 C 0.271 3.729 16 O -0.325 6.325 17 N -0.293 5.293 18 C 0.121 3.879 19 C -0.245 4.245 20 C 0.006 3.994 21 N -0.285 5.285 22 C 0.150 3.850 23 O -0.215 6.215 24 C -0.013 4.013 25 C 0.001 3.999 26 O -0.406 6.406 27 C -0.243 4.243 28 H 0.113 0.887 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.043 0.957 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.271 0.729 37 H 0.151 0.849 38 H 0.206 0.794 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.117 0.883 42 H 0.086 0.914 43 H 0.250 0.750 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.333 9.273 15.835 18.399 hybrid contribution 0.794 -0.671 -0.028 1.039 sum 2.126 8.602 15.807 18.121 Atomic orbital electron populations 1.22030 0.93967 1.03589 1.01609 1.21708 0.95822 0.80748 1.03521 1.48286 1.59212 1.14726 1.07127 1.19400 0.96151 0.92369 0.79056 1.21330 0.95711 1.32163 1.06130 0.93944 1.25427 1.00398 0.94743 0.96829 1.69987 1.35443 1.34899 1.15546 0.85751 0.81132 0.77821 0.78056 1.19353 1.20968 1.20719 1.19744 0.80207 0.86576 0.84592 1.90652 1.55857 1.66610 1.30641 1.20546 0.80637 0.87634 0.84096 1.91043 1.44332 1.66919 1.30206 1.43012 1.64432 1.11631 1.10204 1.17714 0.91727 0.83719 0.94736 1.22052 1.05887 0.94792 1.01742 1.22604 0.89264 0.93624 0.93959 1.67401 1.18030 1.37844 1.05220 1.19552 0.88732 0.89407 0.87295 1.86256 1.58800 1.31804 1.44642 1.22970 0.98147 0.79997 1.00164 1.22380 0.84808 0.95834 0.96848 1.86539 1.30906 1.67795 1.55359 1.20747 1.03037 0.95925 1.04579 0.88741 0.93143 0.92993 0.89697 0.89781 0.95655 0.94195 0.92771 0.72863 0.84859 0.79374 0.92345 0.88794 0.88266 0.91375 0.74955 0.82112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.27 10.24 71.98 0.74 -3.53 16 2 C 0.10 3.47 6.11 86.38 0.53 4.00 16 3 N -0.56 -23.35 2.47 -827.84 -2.04 -25.39 16 4 C 0.25 12.32 4.77 85.63 0.41 12.73 16 5 C -0.51 -28.00 7.72 25.60 0.20 -27.80 16 6 H 0.04 2.36 7.81 -2.91 -0.02 2.34 16 7 C 0.03 1.42 5.46 84.65 0.46 1.89 16 8 N -0.92 -53.02 13.29 21.45 0.28 -52.73 16 9 Si 0.95 44.88 29.54 68.60 2.03 46.91 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 13 C 0.51 20.46 7.68 87.25 0.67 21.13 16 14 O -0.56 -21.78 16.05 -3.29 -0.05 -21.83 16 15 C 0.49 19.60 7.45 87.24 0.65 20.25 16 16 O -0.46 -21.65 9.99 -3.26 -0.03 -21.68 16 17 N -0.64 -20.62 5.33 -304.37 -1.62 -22.24 16 18 C 0.22 7.11 6.28 38.49 0.24 7.36 16 19 C -0.22 -7.24 8.72 22.50 0.20 -7.05 16 20 C 0.16 4.56 11.17 84.56 0.94 5.50 16 21 N -0.56 -16.25 9.21 -309.17 -2.85 -19.09 16 22 C 0.33 9.61 7.48 84.72 0.63 10.25 16 23 O -0.31 -8.23 10.08 -85.39 -0.86 -9.09 16 24 C 0.06 1.26 5.69 71.98 0.41 1.67 16 25 C 0.08 1.07 7.43 71.98 0.53 1.60 16 26 O -0.60 -10.56 13.62 -144.34 -1.97 -12.52 16 27 C -0.22 -6.26 9.99 22.60 0.23 -6.03 16 28 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 2.81 8.11 -2.39 -0.02 2.79 16 32 H 0.08 2.69 7.37 -2.39 -0.02 2.67 16 33 H 0.03 1.29 8.03 -2.39 -0.02 1.27 16 34 H 0.04 2.15 5.93 -2.38 -0.01 2.13 16 35 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 36 H 0.43 11.52 8.30 -92.71 -0.77 10.75 16 37 H 0.13 4.83 6.63 -2.91 -0.02 4.81 16 38 H 0.19 4.19 8.06 -2.91 -0.02 4.17 16 39 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 40 H 0.09 1.62 8.10 -2.39 -0.02 1.60 16 41 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.40 2.81 9.12 -74.05 -0.68 2.13 16 44 H 0.16 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -71.95 379.73 -0.67 -72.62 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: -0.39 Total: 23.10 kcal Atomic # 6 Polarization: 35.12 SS G_CDS: 6.84 Total: 41.96 kcal Atomic # 7 Polarization: -113.23 SS G_CDS: -6.23 Total: -119.46 kcal Atomic # 8 Polarization: -62.21 SS G_CDS: -2.91 Total: -65.12 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -71.95 -0.67 -72.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595006340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.211 kcal (2) G-P(sol) polarization free energy of solvation -71.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds