Wall clock time and date at job start Tue Mar 31 2020 22:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46494 * 109.46905 * 2 1 4 4 C 1.46495 * 120.00472 * 274.94530 * 3 2 1 5 5 C 1.50702 * 109.46889 * 263.11950 * 4 3 2 6 6 H 1.07993 * 120.00495 * 359.97438 * 5 4 3 7 7 C 1.37888 * 119.99751 * 179.97438 * 5 4 3 8 8 N 1.31508 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99671 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47285 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46847 * 120.00175 * 9 7 5 12 12 H 1.48501 * 109.47030 * 239.99661 * 9 7 5 13 13 C 1.34780 * 119.99833 * 94.94486 * 3 2 1 14 14 O 1.21361 * 120.00050 * 3.69476 * 13 3 2 15 15 C 1.49346 * 120.00144 * 183.68877 * 13 3 2 16 16 O 1.21376 * 119.99991 * 354.26743 * 15 13 3 17 17 N 1.34775 * 120.00201 * 174.26645 * 15 13 3 18 18 C 1.39256 * 120.00178 * 179.97438 * 17 15 13 19 19 C 1.40511 * 126.56435 * 359.69585 * 18 17 15 20 20 C 1.35212 * 107.95561 * 179.82459 * 19 18 17 21 21 C 1.50701 * 125.40704 * 180.14111 * 20 19 18 22 22 N 1.35620 * 109.18033 * 0.43809 * 20 19 18 23 23 H 0.97009 * 125.64524 * 179.72169 * 22 20 19 24 24 C 1.38218 * 108.71131 * 359.72505 * 22 20 19 25 25 C 1.41580 * 126.35959 * 180.02562 * 24 22 20 26 26 O 1.21703 * 119.99835 * 179.97438 * 25 24 22 27 27 O 1.34971 * 119.99805 * 359.97438 * 25 24 22 28 28 C 1.42902 * 116.99814 * 180.02562 * 27 25 24 29 29 H 1.08996 * 109.47142 * 59.99486 * 1 2 3 30 30 H 1.09006 * 109.46971 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47212 * 299.99442 * 1 2 3 32 32 H 1.09002 * 109.46552 * 240.00197 * 2 1 3 33 33 H 1.09004 * 109.47000 * 120.00236 * 2 1 3 34 34 H 1.08997 * 109.47017 * 23.11427 * 4 3 2 35 35 H 1.09001 * 109.47452 * 143.11872 * 4 3 2 36 36 H 0.96997 * 120.00010 * 180.02562 * 8 7 5 37 37 H 0.97002 * 120.00360 * 0.02562 * 17 15 13 38 38 H 1.07997 * 126.02257 * 359.95298 * 19 18 17 39 39 H 1.09006 * 109.47169 * 270.31819 * 21 20 19 40 40 H 1.08996 * 109.47473 * 30.31698 * 21 20 19 41 41 H 1.08997 * 109.47490 * 150.32167 * 21 20 19 42 42 H 1.09006 * 109.47345 * 60.00188 * 28 27 25 43 43 H 1.08999 * 109.47319 * 179.97438 * 28 27 25 44 44 H 1.08998 * 109.47560 * 300.00214 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1594 2.1083 -1.2639 5 6 3.5888 2.0258 -1.7340 6 1 4.3192 1.4861 -1.1497 7 6 3.9641 2.6394 -2.9105 8 7 3.0746 3.2962 -3.6224 9 14 5.7361 2.5376 -3.4928 10 1 6.5325 1.7478 -2.5196 11 1 5.7830 1.8781 -4.8225 12 1 6.3016 3.9066 -3.5991 13 6 2.3378 1.9830 1.1629 14 8 2.2851 1.3600 2.2031 15 6 2.7567 3.4164 1.1715 16 8 2.9102 4.0101 0.1240 17 7 2.9644 4.0509 2.3423 18 6 3.3555 5.3873 2.3503 19 6 3.5787 6.2009 1.2267 20 6 3.9394 7.4279 1.6655 21 6 4.2683 8.6075 0.7872 22 7 3.9646 7.4266 3.0214 23 1 4.1964 8.1826 3.5833 24 6 3.6055 6.1696 3.4703 25 6 3.5096 5.7564 4.8211 26 8 3.1804 4.6152 5.0864 27 8 3.7833 6.6282 5.8145 28 6 3.6668 6.1432 7.1536 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5042 1.6645 -2.0135 35 1 1.8857 3.1528 -1.1147 36 1 3.3385 3.7275 -4.4501 37 1 2.8421 3.5764 3.1795 38 1 3.4776 5.8999 0.1944 39 1 5.3338 8.6034 0.5571 40 1 3.6966 8.5419 -0.1385 41 1 4.0126 9.5305 1.3075 42 1 4.3530 5.3088 7.2989 43 1 3.9141 6.9424 7.8524 44 1 2.6448 5.8082 7.3312 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615080184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:59 Heat of formation + Delta-G solvation = -93.758668 kcal Electronic energy + Delta-G solvation = -29965.041384 eV Core-core repulsion = 25691.377396 eV Total energy + Delta-G solvation = -4273.663988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.71701 -40.16693 -39.82439 -37.91120 -36.63890 -35.68899 -34.25692 -32.62788 -31.82920 -30.47054 -30.07029 -28.56246 -27.05019 -26.56721 -25.00656 -23.04155 -22.75579 -21.56714 -20.83126 -19.78808 -19.05676 -18.49531 -17.05929 -17.00337 -16.62355 -16.47246 -16.15694 -15.47025 -15.26714 -14.94634 -14.70478 -14.61749 -14.18876 -13.85708 -13.77099 -13.41832 -13.31139 -12.98973 -12.93691 -12.65868 -12.48054 -12.30802 -12.21666 -12.01231 -11.99364 -11.62431 -11.47872 -10.91075 -10.88741 -10.84375 -10.70499 -10.63894 -10.53346 -10.38559 -9.92924 -9.61562 -8.69309 -8.36260 -8.23668 -7.83612 -7.65097 -6.00537 -4.02724 1.02239 2.14632 2.65788 2.71688 2.84976 3.21232 3.22854 3.31702 3.39289 3.44565 4.00202 4.18090 4.48106 4.75360 4.90308 4.96630 5.04212 5.07304 5.12564 5.32816 5.35681 5.42115 5.46737 5.57601 5.70846 5.73329 5.82286 5.83720 6.02484 6.20643 6.27008 6.32206 6.46866 6.59147 6.73876 6.74563 7.13632 7.35831 7.43793 7.47429 7.69673 7.76098 7.89802 8.14893 8.23314 8.41127 8.71649 8.99766 9.60076 11.08106 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.010436 B = 0.004129 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.252991 B = 6779.423385 C = 8699.560997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.108 3.892 3 N -0.558 5.558 4 C 0.221 3.779 5 C -0.517 4.517 6 H 0.054 0.946 7 C 0.070 3.930 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.283 1.283 13 C 0.509 3.491 14 O -0.557 6.557 15 C 0.492 3.508 16 O -0.429 6.429 17 N -0.628 5.628 18 C 0.209 3.791 19 C -0.217 4.217 20 C 0.095 3.905 21 C -0.093 4.093 22 N -0.532 5.532 23 H 0.422 0.578 24 C -0.114 4.114 25 C 0.539 3.461 26 O -0.515 6.515 27 O -0.364 6.364 28 C 0.038 3.962 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.261 0.739 37 H 0.427 0.573 38 H 0.181 0.819 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.098 0.902 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.405 9.810 13.705 16.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.015 4.015 3 N -0.289 5.289 4 C 0.102 3.898 5 C -0.556 4.556 6 H 0.073 0.927 7 C -0.133 4.133 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.209 1.209 13 C 0.291 3.709 14 O -0.438 6.438 15 C 0.274 3.726 16 O -0.297 6.297 17 N -0.276 5.276 18 C 0.101 3.899 19 C -0.243 4.243 20 C -0.025 4.025 21 C -0.150 4.150 22 N -0.133 5.133 23 H 0.261 0.739 24 C -0.223 4.223 25 C 0.389 3.611 26 O -0.405 6.405 27 O -0.282 6.282 28 C -0.056 4.056 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.268 0.732 38 H 0.198 0.802 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.117 0.883 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.458 9.639 13.490 16.586 hybrid contribution 1.097 -0.028 0.469 1.193 sum 0.638 9.612 13.958 16.960 Atomic orbital electron populations 1.22116 0.96242 1.01600 1.02241 1.21443 0.93831 0.82973 1.03203 1.48284 1.58981 1.13453 1.08144 1.20101 0.97675 0.94057 0.77944 1.21291 0.94254 1.33402 1.06623 0.92731 1.24793 0.97187 0.94883 0.96400 1.69929 1.33484 1.34466 1.14953 0.86539 0.85222 0.77821 0.78400 1.19951 1.21113 1.20904 1.19614 0.79669 0.87065 0.84562 1.90676 1.55140 1.65859 1.32078 1.20489 0.79901 0.88810 0.83401 1.90840 1.42961 1.66315 1.29569 1.42877 1.64955 1.08619 1.11165 1.17377 0.95998 0.84124 0.92396 1.21331 1.11437 0.91150 1.00383 1.20694 1.01588 0.97683 0.82497 1.20500 1.03138 0.92778 0.98602 1.41603 1.54856 1.10550 1.06274 0.73919 1.17329 1.27334 0.88173 0.89476 1.18364 0.74746 0.83498 0.84482 1.90886 1.46335 1.19468 1.83794 1.86132 1.81727 1.43624 1.16673 1.22841 1.02553 1.00920 0.79278 0.92161 0.91991 0.92820 0.89932 0.90344 0.94976 0.90734 0.92950 0.73237 0.80225 0.90082 0.88975 0.91348 0.92077 0.88350 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 10.24 37.16 0.38 -2.16 16 2 C 0.11 1.98 6.18 -4.04 -0.02 1.96 16 3 N -0.56 -12.22 2.48 -175.61 -0.43 -12.66 16 4 C 0.22 5.50 4.79 -5.20 -0.02 5.47 16 5 C -0.52 -14.10 8.31 -34.44 -0.29 -14.39 16 6 H 0.05 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 8 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.47 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.51 11.27 7.67 -11.63 -0.09 11.18 16 14 O -0.56 -12.54 15.98 5.49 0.09 -12.46 16 15 C 0.49 10.63 7.73 -11.64 -0.09 10.54 16 16 O -0.43 -10.10 9.54 5.47 0.05 -10.04 16 17 N -0.63 -12.08 5.37 -10.04 -0.05 -12.14 16 18 C 0.21 3.67 6.91 -83.39 -0.58 3.10 16 19 C -0.22 -3.62 9.50 -39.80 -0.38 -4.00 16 20 C 0.10 1.19 7.11 -81.99 -0.58 0.60 16 21 C -0.09 -0.79 10.41 36.01 0.37 -0.42 16 22 N -0.53 -6.12 6.10 -6.71 -0.04 -6.16 16 23 H 0.42 3.42 8.96 -40.82 -0.37 3.05 16 24 C -0.11 -1.70 6.92 -83.47 -0.58 -2.28 16 25 C 0.54 7.98 7.72 32.01 0.25 8.23 16 26 O -0.51 -8.83 14.75 -19.42 -0.29 -9.12 16 27 O -0.36 -4.27 10.45 -41.24 -0.43 -4.70 16 28 C 0.04 0.34 10.45 101.05 1.06 1.39 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.47 8.11 -51.93 -0.42 1.04 16 33 H 0.08 1.41 7.24 -51.93 -0.38 1.04 16 34 H 0.03 0.82 8.02 -51.93 -0.42 0.41 16 35 H 0.08 1.99 5.41 -51.93 -0.28 1.71 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.43 8.17 6.28 -40.82 -0.26 7.92 16 38 H 0.18 3.44 5.96 -52.49 -0.31 3.13 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 43 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 LS Contribution 377.52 15.07 5.69 5.69 Total: -1.00 -33.02 377.52 -6.15 -39.17 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -5.78 Total: 9.45 kcal Atomic # 6 Polarization: 21.72 SS G_CDS: -0.67 Total: 21.05 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.21 Total: -55.52 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -0.58 Total: -36.32 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.02 -6.15 -39.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615080184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.587 kcal (2) G-P(sol) polarization free energy of solvation -33.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds