Wall clock time and date at job start Tue Mar 31 2020 22:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46494 * 109.46905 * 2 1 4 4 C 1.46495 * 120.00472 * 274.94530 * 3 2 1 5 5 C 1.50702 * 109.46889 * 263.11950 * 4 3 2 6 6 H 1.07993 * 120.00495 * 359.97438 * 5 4 3 7 7 C 1.37888 * 119.99751 * 179.97438 * 5 4 3 8 8 N 1.31508 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99671 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47285 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46847 * 120.00175 * 9 7 5 12 12 H 1.48501 * 109.47030 * 239.99661 * 9 7 5 13 13 C 1.34780 * 119.99833 * 94.94486 * 3 2 1 14 14 O 1.21361 * 120.00050 * 3.69476 * 13 3 2 15 15 C 1.49346 * 120.00144 * 183.68877 * 13 3 2 16 16 O 1.21376 * 119.99991 * 354.26743 * 15 13 3 17 17 N 1.34775 * 120.00201 * 174.26645 * 15 13 3 18 18 C 1.39256 * 120.00178 * 179.97438 * 17 15 13 19 19 C 1.40511 * 126.56435 * 359.69585 * 18 17 15 20 20 C 1.35212 * 107.95561 * 179.82459 * 19 18 17 21 21 C 1.50701 * 125.40704 * 180.14111 * 20 19 18 22 22 N 1.35620 * 109.18033 * 0.43809 * 20 19 18 23 23 H 0.97009 * 125.64524 * 179.72169 * 22 20 19 24 24 C 1.38218 * 108.71131 * 359.72505 * 22 20 19 25 25 C 1.41580 * 126.35959 * 180.02562 * 24 22 20 26 26 O 1.21703 * 119.99835 * 179.97438 * 25 24 22 27 27 O 1.34971 * 119.99805 * 359.97438 * 25 24 22 28 28 C 1.42902 * 116.99814 * 180.02562 * 27 25 24 29 29 H 1.08996 * 109.47142 * 59.99486 * 1 2 3 30 30 H 1.09006 * 109.46971 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47212 * 299.99442 * 1 2 3 32 32 H 1.09002 * 109.46552 * 240.00197 * 2 1 3 33 33 H 1.09004 * 109.47000 * 120.00236 * 2 1 3 34 34 H 1.08997 * 109.47017 * 23.11427 * 4 3 2 35 35 H 1.09001 * 109.47452 * 143.11872 * 4 3 2 36 36 H 0.96997 * 120.00010 * 180.02562 * 8 7 5 37 37 H 0.97002 * 120.00360 * 0.02562 * 17 15 13 38 38 H 1.07997 * 126.02257 * 359.95298 * 19 18 17 39 39 H 1.09006 * 109.47169 * 270.31819 * 21 20 19 40 40 H 1.08996 * 109.47473 * 30.31698 * 21 20 19 41 41 H 1.08997 * 109.47490 * 150.32167 * 21 20 19 42 42 H 1.09006 * 109.47345 * 60.00188 * 28 27 25 43 43 H 1.08999 * 109.47319 * 179.97438 * 28 27 25 44 44 H 1.08998 * 109.47560 * 300.00214 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1594 2.1083 -1.2639 5 6 3.5888 2.0258 -1.7340 6 1 4.3192 1.4861 -1.1497 7 6 3.9641 2.6394 -2.9105 8 7 3.0746 3.2962 -3.6224 9 14 5.7361 2.5376 -3.4928 10 1 6.5325 1.7478 -2.5196 11 1 5.7830 1.8781 -4.8225 12 1 6.3016 3.9066 -3.5991 13 6 2.3378 1.9830 1.1629 14 8 2.2851 1.3600 2.2031 15 6 2.7567 3.4164 1.1715 16 8 2.9102 4.0101 0.1240 17 7 2.9644 4.0509 2.3423 18 6 3.3555 5.3873 2.3503 19 6 3.5787 6.2009 1.2267 20 6 3.9394 7.4279 1.6655 21 6 4.2683 8.6075 0.7872 22 7 3.9646 7.4266 3.0214 23 1 4.1964 8.1826 3.5833 24 6 3.6055 6.1696 3.4703 25 6 3.5096 5.7564 4.8211 26 8 3.1804 4.6152 5.0864 27 8 3.7833 6.6282 5.8145 28 6 3.6668 6.1432 7.1536 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5042 1.6645 -2.0135 35 1 1.8857 3.1528 -1.1147 36 1 3.3385 3.7275 -4.4501 37 1 2.8421 3.5764 3.1795 38 1 3.4776 5.8999 0.1944 39 1 5.3338 8.6034 0.5571 40 1 3.6966 8.5419 -0.1385 41 1 4.0126 9.5305 1.3075 42 1 4.3530 5.3088 7.2989 43 1 3.9141 6.9424 7.8524 44 1 2.6448 5.8082 7.3312 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615080184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:57 Heat of formation + Delta-G solvation = -116.249434 kcal Electronic energy + Delta-G solvation = -29966.016657 eV Core-core repulsion = 25691.377396 eV Total energy + Delta-G solvation = -4274.639261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -42.93439 -41.69150 -41.03506 -39.56423 -37.79470 -37.37872 -35.77749 -34.66722 -32.82759 -32.05405 -31.34455 -29.42807 -29.03849 -27.52662 -26.53297 -24.99150 -24.10899 -22.88066 -22.04403 -21.10516 -20.57391 -19.61783 -18.86799 -18.40331 -18.18452 -17.74522 -17.65676 -16.92217 -16.82113 -16.62075 -16.02545 -15.87268 -15.81313 -15.29587 -14.95963 -14.85540 -14.50102 -14.33900 -14.32397 -14.13637 -13.70449 -13.61476 -13.41205 -13.27569 -13.13506 -13.00807 -12.88211 -12.69718 -12.68542 -12.31708 -12.10641 -12.03861 -11.85109 -11.80867 -11.78346 -11.63075 -10.64281 -10.14170 -9.64436 -9.52269 -8.97727 -8.11652 -6.20789 -0.23414 0.53466 1.27248 1.40321 1.42313 1.52794 1.54113 1.72991 1.90039 2.08833 2.35214 2.43997 2.64051 3.21239 3.34558 3.79096 3.91303 4.10847 4.15150 4.31874 4.33400 4.34007 4.42716 4.51135 4.60379 4.69847 4.75950 4.79932 4.82760 4.91465 5.00719 5.04571 5.19564 5.22253 5.26381 5.42364 5.55986 5.63438 5.79173 5.82018 6.09975 6.15215 6.29972 6.47201 6.64236 6.74499 6.83295 7.04553 7.45273 8.96636 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.010436 B = 0.004129 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.252991 B = 6779.423385 C = 8699.560997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.100 3.900 3 N -0.561 5.561 4 C 0.239 3.761 5 C -0.527 4.527 6 H 0.041 0.959 7 C 0.026 3.974 8 N -0.916 5.916 9 Si 0.951 3.049 10 H -0.277 1.277 11 H -0.273 1.273 12 H -0.278 1.278 13 C 0.504 3.496 14 O -0.563 6.563 15 C 0.489 3.511 16 O -0.457 6.457 17 N -0.621 5.621 18 C 0.168 3.832 19 C -0.253 4.253 20 C 0.125 3.875 21 C -0.092 4.092 22 N -0.503 5.503 23 H 0.443 0.557 24 C -0.111 4.111 25 C 0.541 3.459 26 O -0.544 6.544 27 O -0.353 6.353 28 C 0.029 3.971 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.023 0.977 35 H 0.056 0.944 36 H 0.265 0.735 37 H 0.426 0.574 38 H 0.150 0.850 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.057 0.943 43 H 0.139 0.861 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.566 11.550 14.849 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.021 4.021 3 N -0.292 5.292 4 C 0.119 3.881 5 C -0.565 4.565 6 H 0.059 0.941 7 C -0.174 4.174 8 N -0.556 5.556 9 Si 0.777 3.223 10 H -0.202 1.202 11 H -0.199 1.199 12 H -0.204 1.204 13 C 0.286 3.714 14 O -0.445 6.445 15 C 0.271 3.729 16 O -0.327 6.327 17 N -0.269 5.269 18 C 0.062 3.938 19 C -0.278 4.278 20 C 0.003 3.997 21 C -0.149 4.149 22 N -0.105 5.105 23 H 0.286 0.714 24 C -0.222 4.222 25 C 0.392 3.608 26 O -0.436 6.436 27 O -0.270 6.270 28 C -0.064 4.064 29 H 0.072 0.928 30 H 0.115 0.885 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.041 0.959 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.266 0.734 38 H 0.167 0.833 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.123 0.877 42 H 0.076 0.924 43 H 0.157 0.843 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.518 11.416 14.690 18.612 hybrid contribution 0.802 -0.477 0.251 0.966 sum 1.320 10.940 14.941 18.565 Atomic orbital electron populations 1.22041 0.93854 1.03678 1.01576 1.21722 0.95813 0.81046 1.03549 1.48304 1.59040 1.14686 1.07123 1.19657 0.96355 0.93305 0.78738 1.21413 0.94986 1.33386 1.06755 0.94111 1.25489 1.00871 0.94498 0.96507 1.70016 1.35179 1.35001 1.15356 0.85621 0.80654 0.77902 0.78108 1.20236 1.19888 1.20376 1.19803 0.79564 0.87480 0.84535 1.90652 1.55617 1.66163 1.32088 1.20452 0.79944 0.88662 0.83843 1.90839 1.44734 1.66706 1.30452 1.42705 1.64528 1.09532 1.10115 1.17707 0.98399 0.83716 0.93995 1.21153 1.14335 0.93253 0.99066 1.21075 0.98374 0.97284 0.82960 1.20684 1.04001 0.92245 0.97941 1.41570 1.52712 1.10002 1.06217 0.71367 1.17282 1.26766 0.88921 0.89182 1.18363 0.74139 0.83316 0.84994 1.90872 1.47618 1.20818 1.84290 1.86125 1.80912 1.42541 1.17394 1.23201 1.02535 1.02565 0.78119 0.92784 0.88511 0.93446 0.89530 0.89969 0.95881 0.92680 0.92623 0.73390 0.83283 0.88535 0.89323 0.87734 0.92432 0.84328 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.67 10.24 71.98 0.74 -3.93 16 2 C 0.10 3.69 6.18 86.38 0.53 4.22 16 3 N -0.56 -25.42 2.48 -827.86 -2.05 -27.47 16 4 C 0.24 12.40 4.79 85.63 0.41 12.81 16 5 C -0.53 -29.58 8.31 25.60 0.21 -29.36 16 6 H 0.04 2.35 7.81 -2.91 -0.02 2.33 16 7 C 0.03 1.47 5.46 84.66 0.46 1.93 16 8 N -0.92 -53.01 13.29 21.45 0.28 -52.73 16 9 Si 0.95 44.50 29.54 68.60 2.03 46.52 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 C 0.50 23.21 7.67 87.24 0.67 23.88 16 14 O -0.56 -26.08 15.98 -3.28 -0.05 -26.13 16 15 C 0.49 22.34 7.73 87.24 0.67 23.01 16 16 O -0.46 -22.90 9.54 -3.33 -0.03 -22.93 16 17 N -0.62 -25.12 5.37 -304.02 -1.63 -26.76 16 18 C 0.17 6.10 6.91 38.67 0.27 6.36 16 19 C -0.25 -8.69 9.50 22.13 0.21 -8.48 16 20 C 0.13 2.93 7.11 41.28 0.29 3.23 16 21 C -0.09 -1.30 10.41 71.24 0.74 -0.56 16 22 N -0.50 -10.41 6.10 -175.14 -1.07 -11.47 16 23 H 0.44 5.50 8.96 -92.70 -0.83 4.67 16 24 C -0.11 -3.25 6.92 39.12 0.27 -2.98 16 25 C 0.54 15.57 7.72 68.64 0.53 16.10 16 26 O -0.54 -18.75 14.75 19.17 0.28 -18.47 16 27 O -0.35 -7.48 10.45 -58.88 -0.62 -8.10 16 28 C 0.03 0.45 10.45 113.37 1.18 1.63 16 29 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.09 3.09 8.11 -2.39 -0.02 3.07 16 33 H 0.08 2.96 7.24 -2.38 -0.02 2.94 16 34 H 0.02 1.23 8.02 -2.39 -0.02 1.21 16 35 H 0.06 3.12 5.41 -2.39 -0.01 3.10 16 36 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 37 H 0.43 17.08 6.28 -92.71 -0.58 16.50 16 38 H 0.15 6.13 5.96 -2.91 -0.02 6.12 16 39 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.06 0.95 8.13 -2.38 -0.02 0.93 16 43 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 Total: -1.00 -74.33 377.52 3.99 -70.33 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: -0.35 Total: 29.33 kcal Atomic # 6 Polarization: 40.67 SS G_CDS: 7.20 Total: 47.87 kcal Atomic # 7 Polarization: -113.96 SS G_CDS: -4.47 Total: -118.43 kcal Atomic # 8 Polarization: -75.21 SS G_CDS: -0.42 Total: -75.63 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -74.33 3.99 -70.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615080184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.916 kcal (2) G-P(sol) polarization free energy of solvation -74.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds