Wall clock time and date at job start Tue Mar 31 2020 21:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35728 * 117.00324 * 2 1 4 4 C 1.38775 * 119.57669 * 179.97438 * 3 2 1 5 5 C 1.38509 * 119.30634 * 179.97438 * 4 3 2 6 6 C 1.39145 * 118.47871 * 0.02562 * 5 4 3 7 7 N 1.40033 * 120.44792 * 179.97438 * 6 5 4 8 8 C 1.34783 * 120.00134 * 34.56876 * 7 6 5 9 9 O 1.21405 * 119.99675 * 355.28715 * 8 7 6 10 10 C 1.49308 * 120.00125 * 175.29014 * 8 7 6 11 11 O 1.21366 * 120.00171 * 5.96319 * 10 8 7 12 12 N 1.34769 * 119.99974 * 185.96389 * 10 8 7 13 13 C 1.46501 * 120.00126 * 356.49674 * 12 10 8 14 14 C 1.46501 * 120.00040 * 176.49440 * 12 10 8 15 15 H 1.08999 * 109.47515 * 359.97438 * 14 12 10 16 16 C 1.53003 * 109.47545 * 240.00273 * 14 12 10 17 17 C 1.50700 * 109.47311 * 120.00327 * 14 12 10 18 18 H 1.07997 * 119.99909 * 359.97438 * 17 14 12 19 19 C 1.37874 * 120.00095 * 180.02562 * 17 14 12 20 20 N 1.31511 * 120.00197 * 359.97438 * 19 17 14 21 21 Si 1.86803 * 119.99916 * 179.97438 * 19 17 14 22 22 H 1.48495 * 109.47211 * 179.97438 * 21 19 17 23 23 H 1.48499 * 109.46927 * 299.99889 * 21 19 17 24 24 H 1.48498 * 109.47217 * 59.99825 * 21 19 17 25 25 C 1.39406 * 119.10074 * 0.24464 * 6 5 4 26 26 O 1.35719 * 119.69888 * 179.74731 * 25 6 5 27 27 C 1.42899 * 117.00425 * 179.97438 * 26 25 6 28 28 N 1.32265 * 120.60773 * 359.50338 * 25 6 5 29 29 H 1.09000 * 109.47434 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46924 * 300.00005 * 1 2 3 31 31 H 1.08999 * 109.47248 * 59.99874 * 1 2 3 32 32 H 1.07998 * 120.34727 * 0.02817 * 4 3 2 33 33 H 1.07993 * 120.75788 * 179.97438 * 5 4 3 34 34 H 0.96994 * 120.00020 * 214.56424 * 7 6 5 35 35 H 1.08999 * 109.46781 * 275.96166 * 13 12 10 36 36 H 1.08992 * 109.47236 * 35.96388 * 13 12 10 37 37 H 1.09004 * 109.47390 * 155.96253 * 13 12 10 38 38 H 1.09007 * 109.46560 * 300.00216 * 16 14 12 39 39 H 1.09005 * 109.47296 * 59.99185 * 16 14 12 40 40 H 1.08994 * 109.47673 * 180.02562 * 16 14 12 41 41 H 0.96998 * 120.00474 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.47082 * 300.00808 * 27 26 25 43 43 H 1.09002 * 109.46904 * 60.00312 * 27 26 25 44 44 H 1.08997 * 109.47189 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4315 1.2716 0.0005 5 6 4.0546 2.5087 0.0000 6 6 3.2607 3.6514 -0.0005 7 7 3.8473 4.9230 -0.0006 8 6 5.0026 5.1322 -0.6624 9 8 5.5791 4.2011 -1.1864 10 6 5.5734 6.5090 -0.7511 11 8 5.0574 7.4205 -0.1381 12 7 6.6616 6.7396 -1.5120 13 6 7.3302 5.6266 -2.1906 14 6 7.1760 8.1032 -1.6605 15 1 6.5535 8.7908 -1.0879 16 6 7.1484 8.5008 -3.1377 17 6 8.5928 8.1641 -1.1504 18 1 9.0629 7.2759 -0.7548 19 6 9.2885 9.3538 -1.1879 20 7 8.7160 10.4355 -1.6692 21 14 11.0444 9.4293 -0.5550 22 1 11.5659 10.8115 -0.7056 23 1 11.0708 9.0432 0.8787 24 1 11.8926 8.4930 -1.3354 25 6 1.8735 3.5133 0.0047 26 8 1.0876 4.6197 0.0095 27 6 -0.3261 4.4114 0.0141 28 7 1.3162 2.3138 0.0002 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 4.0185 0.3651 0.0005 33 1 5.1319 2.5845 0.0008 34 1 3.4221 5.6532 0.4757 35 1 8.0243 5.1453 -1.5016 36 1 6.5855 4.9025 -2.5210 37 1 7.8782 6.0039 -3.0540 38 1 7.7707 7.8133 -3.7106 39 1 6.1236 8.4568 -3.5067 40 1 7.5315 9.5152 -3.2482 41 1 9.2055 11.2725 -1.6959 42 1 -0.6138 3.8516 -0.8758 43 1 -0.6075 3.8486 0.9042 44 1 -0.8353 5.3751 0.0172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615249783.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:47 Heat of formation + Delta-G solvation = -76.966576 kcal Electronic energy + Delta-G solvation = -29349.168538 eV Core-core repulsion = 25076.232710 eV Total energy + Delta-G solvation = -4272.935828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.45962 -40.29813 -39.15858 -38.26737 -37.18255 -35.87801 -34.72368 -32.76604 -32.14055 -29.98074 -29.48962 -28.14483 -26.86967 -26.23931 -25.30111 -24.72073 -23.40487 -22.84475 -20.76450 -19.53610 -19.06978 -18.15719 -17.71305 -17.11053 -16.65447 -16.43417 -16.07608 -15.92481 -15.80642 -15.53166 -15.26988 -15.04259 -14.41983 -14.08013 -13.85328 -13.63311 -13.38315 -13.22585 -13.13274 -12.62140 -12.39249 -12.31131 -11.98443 -11.92849 -11.85450 -11.58024 -11.18960 -11.09830 -10.84675 -10.79863 -10.68177 -10.58722 -10.30163 -10.23107 -10.19643 -9.60247 -9.24591 -8.78557 -8.46995 -7.94354 -7.72168 -6.11447 -4.19745 0.83015 1.00622 1.87154 2.56681 2.70440 2.88139 3.27811 3.32406 3.34850 3.43936 3.71299 3.92201 4.03011 4.37090 4.65534 4.71932 4.89182 4.96629 4.97134 5.00240 5.03541 5.10521 5.20264 5.26556 5.35246 5.48679 5.71590 5.95943 6.05174 6.23767 6.35780 6.55057 6.58345 6.70440 6.74010 6.95135 7.02828 7.12552 7.27750 7.37227 7.42461 7.65076 7.84497 7.98838 8.08992 8.34423 8.59986 8.85330 9.46381 10.93969 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.024073 B = 0.002486 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.848932 B =11261.601526 C =11880.635096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.304 6.304 3 C 0.340 3.660 4 C -0.205 4.205 5 C -0.012 4.012 6 C 0.049 3.951 7 N -0.635 5.635 8 C 0.510 3.490 9 O -0.506 6.506 10 C 0.494 3.506 11 O -0.534 6.534 12 N -0.551 5.551 13 C 0.072 3.928 14 C 0.254 3.746 15 H 0.067 0.933 16 C -0.148 4.148 17 C -0.527 4.527 18 H 0.061 0.939 19 C 0.066 3.934 20 N -0.888 5.888 21 Si 0.902 3.098 22 H -0.286 1.286 23 H -0.276 1.276 24 H -0.276 1.276 25 C 0.342 3.658 26 O -0.301 6.301 27 C 0.042 3.958 28 N -0.578 5.578 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.149 0.851 33 H 0.168 0.832 34 H 0.426 0.574 35 H 0.052 0.948 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.034 0.966 39 H 0.013 0.987 40 H 0.097 0.903 41 H 0.265 0.735 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.379 -17.737 2.262 24.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.211 6.211 3 C 0.163 3.837 4 C -0.226 4.226 5 C -0.039 4.039 6 C -0.049 4.049 7 N -0.283 5.283 8 C 0.294 3.706 9 O -0.381 6.381 10 C 0.275 3.725 11 O -0.413 6.413 12 N -0.281 5.281 13 C -0.071 4.071 14 C 0.155 3.845 15 H 0.085 0.915 16 C -0.207 4.207 17 C -0.566 4.566 18 H 0.079 0.921 19 C -0.137 4.137 20 N -0.526 5.526 21 Si 0.729 3.271 22 H -0.211 1.211 23 H -0.202 1.202 24 H -0.201 1.201 25 C 0.161 3.839 26 O -0.207 6.207 27 C -0.053 4.053 28 N -0.316 5.316 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.167 0.833 33 H 0.185 0.815 34 H 0.265 0.735 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.053 0.947 39 H 0.032 0.968 40 H 0.116 0.884 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.881 -17.685 2.119 24.540 hybrid contribution 1.078 0.401 0.501 1.254 sum -15.803 -17.285 2.620 23.566 Atomic orbital electron populations 1.22846 0.77357 1.02966 1.02328 1.86274 1.22795 1.24169 1.87886 1.19373 0.89102 0.83219 0.92036 1.20869 0.91282 0.99370 1.11101 1.21506 1.01789 0.88796 0.91779 1.17530 0.88404 0.86842 1.12087 1.42969 1.24054 1.10181 1.51095 1.20988 0.80808 0.91028 0.77777 1.90624 1.58769 1.44475 1.44269 1.19509 0.83007 0.87338 0.82660 1.90733 1.61029 1.44552 1.44954 1.48261 1.24594 1.11625 1.43654 1.22147 0.98387 0.88960 0.97590 1.19174 0.94978 0.75954 0.94380 0.91543 1.22122 0.97214 1.04387 0.96930 1.21232 0.97381 0.96011 1.41932 0.92075 1.24884 0.98514 0.95323 0.94977 1.69857 1.37302 1.00217 1.45178 0.86499 0.84006 0.77100 0.79474 1.21144 1.20187 1.20144 1.19110 0.87038 0.84442 0.93267 1.86285 1.19748 1.27110 1.87601 1.22877 0.77090 1.03061 1.02245 1.66771 1.40801 0.97932 1.26136 0.88590 0.92393 0.92387 0.83334 0.81503 0.73519 0.92923 0.89423 0.91169 0.94729 0.96772 0.88435 0.92516 0.92323 0.92329 0.88279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.38 101.05 1.05 1.33 16 2 O -0.30 -3.09 10.47 -18.89 -0.20 -3.29 16 3 C 0.34 3.91 7.48 -17.14 -0.13 3.78 16 4 C -0.20 -2.24 10.03 -39.28 -0.39 -2.64 16 5 C -0.01 -0.15 8.80 -39.14 -0.34 -0.49 16 6 C 0.05 0.66 6.35 -83.34 -0.53 0.13 16 7 N -0.63 -9.36 5.19 -10.06 -0.05 -9.41 16 8 C 0.51 8.74 7.63 -11.65 -0.09 8.65 16 9 O -0.51 -8.62 10.59 5.45 0.06 -8.56 16 10 C 0.49 10.27 7.73 -11.66 -0.09 10.18 16 11 O -0.53 -12.32 15.82 5.48 0.09 -12.23 16 12 N -0.55 -12.02 2.75 -175.83 -0.48 -12.50 16 13 C 0.07 1.34 8.75 59.85 0.52 1.86 16 14 C 0.25 6.43 2.62 -69.08 -0.18 6.24 16 15 H 0.07 1.90 6.90 -51.93 -0.36 1.54 16 16 C -0.15 -3.49 8.96 37.16 0.33 -3.16 16 17 C -0.53 -14.13 8.37 -34.44 -0.29 -14.42 16 18 H 0.06 1.63 7.65 -52.49 -0.40 1.23 16 19 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 20 N -0.89 -24.67 11.32 55.43 0.63 -24.04 16 21 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 C 0.34 4.37 7.51 -16.93 -0.13 4.24 16 26 O -0.30 -3.59 10.04 -18.86 -0.19 -3.77 16 27 C 0.04 0.35 10.38 101.05 1.05 1.40 16 28 N -0.58 -6.85 8.05 -13.23 -0.11 -6.95 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 31 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 32 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.17 2.10 6.28 -52.49 -0.33 1.77 16 34 H 0.43 6.04 8.04 -40.82 -0.33 5.71 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.09 1.51 5.36 -51.94 -0.28 1.24 16 37 H 0.07 1.29 6.44 -51.93 -0.33 0.95 16 38 H 0.03 0.76 6.67 -51.92 -0.35 0.41 16 39 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.10 2.50 6.07 -51.93 -0.32 2.19 16 41 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 43 H 0.06 0.44 8.11 -51.93 -0.42 0.02 16 44 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 370.16 15.07 5.58 5.58 Total: -1.00 -30.71 370.16 -4.64 -35.35 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -5.62 Total: 5.17 kcal Atomic # 6 Polarization: 18.10 SS G_CDS: 0.69 Total: 18.78 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.02 Total: -52.90 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.24 Total: -27.85 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.71 -4.64 -35.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615249783.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.619 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds