Wall clock time and date at job start Tue Mar 31 2020 21:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35728 * 117.00324 * 2 1 4 4 C 1.38775 * 119.57669 * 179.97438 * 3 2 1 5 5 C 1.38509 * 119.30634 * 179.97438 * 4 3 2 6 6 C 1.39145 * 118.47871 * 0.02562 * 5 4 3 7 7 N 1.40033 * 120.44792 * 179.97438 * 6 5 4 8 8 C 1.34783 * 120.00134 * 34.56876 * 7 6 5 9 9 O 1.21405 * 119.99675 * 355.28715 * 8 7 6 10 10 C 1.49308 * 120.00125 * 175.29014 * 8 7 6 11 11 O 1.21366 * 120.00171 * 5.96319 * 10 8 7 12 12 N 1.34769 * 119.99974 * 185.96389 * 10 8 7 13 13 C 1.46501 * 120.00126 * 356.49674 * 12 10 8 14 14 C 1.46501 * 120.00040 * 176.49440 * 12 10 8 15 15 H 1.08999 * 109.47515 * 359.97438 * 14 12 10 16 16 C 1.53003 * 109.47545 * 240.00273 * 14 12 10 17 17 C 1.50700 * 109.47311 * 120.00327 * 14 12 10 18 18 H 1.07997 * 119.99909 * 359.97438 * 17 14 12 19 19 C 1.37874 * 120.00095 * 180.02562 * 17 14 12 20 20 N 1.31511 * 120.00197 * 359.97438 * 19 17 14 21 21 Si 1.86803 * 119.99916 * 179.97438 * 19 17 14 22 22 H 1.48495 * 109.47211 * 179.97438 * 21 19 17 23 23 H 1.48499 * 109.46927 * 299.99889 * 21 19 17 24 24 H 1.48498 * 109.47217 * 59.99825 * 21 19 17 25 25 C 1.39406 * 119.10074 * 0.24464 * 6 5 4 26 26 O 1.35719 * 119.69888 * 179.74731 * 25 6 5 27 27 C 1.42899 * 117.00425 * 179.97438 * 26 25 6 28 28 N 1.32265 * 120.60773 * 359.50338 * 25 6 5 29 29 H 1.09000 * 109.47434 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46924 * 300.00005 * 1 2 3 31 31 H 1.08999 * 109.47248 * 59.99874 * 1 2 3 32 32 H 1.07998 * 120.34727 * 0.02817 * 4 3 2 33 33 H 1.07993 * 120.75788 * 179.97438 * 5 4 3 34 34 H 0.96994 * 120.00020 * 214.56424 * 7 6 5 35 35 H 1.08999 * 109.46781 * 275.96166 * 13 12 10 36 36 H 1.08992 * 109.47236 * 35.96388 * 13 12 10 37 37 H 1.09004 * 109.47390 * 155.96253 * 13 12 10 38 38 H 1.09007 * 109.46560 * 300.00216 * 16 14 12 39 39 H 1.09005 * 109.47296 * 59.99185 * 16 14 12 40 40 H 1.08994 * 109.47673 * 180.02562 * 16 14 12 41 41 H 0.96998 * 120.00474 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.47082 * 300.00808 * 27 26 25 43 43 H 1.09002 * 109.46904 * 60.00312 * 27 26 25 44 44 H 1.08997 * 109.47189 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4315 1.2716 0.0005 5 6 4.0546 2.5087 0.0000 6 6 3.2607 3.6514 -0.0005 7 7 3.8473 4.9230 -0.0006 8 6 5.0026 5.1322 -0.6624 9 8 5.5791 4.2011 -1.1864 10 6 5.5734 6.5090 -0.7511 11 8 5.0574 7.4205 -0.1381 12 7 6.6616 6.7396 -1.5120 13 6 7.3302 5.6266 -2.1906 14 6 7.1760 8.1032 -1.6605 15 1 6.5535 8.7908 -1.0879 16 6 7.1484 8.5008 -3.1377 17 6 8.5928 8.1641 -1.1504 18 1 9.0629 7.2759 -0.7548 19 6 9.2885 9.3538 -1.1879 20 7 8.7160 10.4355 -1.6692 21 14 11.0444 9.4293 -0.5550 22 1 11.5659 10.8115 -0.7056 23 1 11.0708 9.0432 0.8787 24 1 11.8926 8.4930 -1.3354 25 6 1.8735 3.5133 0.0047 26 8 1.0876 4.6197 0.0095 27 6 -0.3261 4.4114 0.0141 28 7 1.3162 2.3138 0.0002 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 4.0185 0.3651 0.0005 33 1 5.1319 2.5845 0.0008 34 1 3.4221 5.6532 0.4757 35 1 8.0243 5.1453 -1.5016 36 1 6.5855 4.9025 -2.5210 37 1 7.8782 6.0039 -3.0540 38 1 7.7707 7.8133 -3.7106 39 1 6.1236 8.4568 -3.5067 40 1 7.5315 9.5152 -3.2482 41 1 9.2055 11.2725 -1.6959 42 1 -0.6138 3.8516 -0.8758 43 1 -0.6075 3.8486 0.9042 44 1 -0.8353 5.3751 0.0172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615249783.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:46 Heat of formation + Delta-G solvation = -100.565832 kcal Electronic energy + Delta-G solvation = -29350.191878 eV Core-core repulsion = 25076.232710 eV Total energy + Delta-G solvation = -4273.959169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.51211 -41.59309 -40.05002 -39.68864 -38.14637 -37.52722 -36.04597 -34.68232 -33.07060 -31.46778 -30.86443 -28.82838 -27.93553 -27.53070 -27.30160 -26.09405 -24.31072 -24.03268 -22.29920 -20.96290 -19.99381 -19.32580 -18.78718 -18.62647 -18.18767 -17.57108 -17.53397 -17.12441 -16.96875 -16.71614 -16.52699 -16.06806 -16.00833 -15.32261 -14.99398 -14.80574 -14.53464 -14.46737 -14.25680 -14.14389 -13.97857 -13.54373 -13.34542 -12.98264 -12.90486 -12.75171 -12.70609 -12.65752 -12.61738 -12.30300 -12.18225 -12.13983 -12.04100 -11.47266 -11.22635 -11.18949 -10.64057 -10.53898 -10.24726 -9.51935 -8.89246 -8.15851 -6.32203 -0.20784 0.08860 0.48382 1.24795 1.44204 1.45663 1.53477 1.84358 2.08014 2.10113 2.39914 2.57671 2.58982 3.11604 3.12597 3.27174 3.73434 3.97598 4.16898 4.39522 4.39993 4.44281 4.44450 4.46361 4.58104 4.67818 4.73495 4.74180 4.78059 4.82381 4.87638 4.99705 5.00707 5.17936 5.33990 5.38867 5.43671 5.62505 5.75849 5.84044 5.98104 6.10556 6.23045 6.46567 6.52282 6.65511 6.74826 6.99275 7.38370 8.88530 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.024073 B = 0.002486 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.848932 B =11261.601526 C =11880.635096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.308 6.308 3 C 0.340 3.660 4 C -0.201 4.201 5 C -0.012 4.012 6 C 0.022 3.978 7 N -0.621 5.621 8 C 0.521 3.479 9 O -0.505 6.505 10 C 0.488 3.512 11 O -0.565 6.565 12 N -0.561 5.561 13 C 0.077 3.923 14 C 0.258 3.742 15 H 0.023 0.977 16 C -0.135 4.135 17 C -0.542 4.542 18 H 0.059 0.941 19 C 0.019 3.981 20 N -0.914 5.914 21 Si 0.965 3.035 22 H -0.282 1.282 23 H -0.277 1.277 24 H -0.265 1.265 25 C 0.342 3.658 26 O -0.315 6.315 27 C 0.037 3.963 28 N -0.577 5.577 29 H 0.125 0.875 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.172 0.828 33 H 0.165 0.835 34 H 0.427 0.573 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.024 0.976 40 H 0.075 0.925 41 H 0.266 0.734 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.737 -20.019 2.275 26.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.215 6.215 3 C 0.162 3.838 4 C -0.222 4.222 5 C -0.038 4.038 6 C -0.074 4.074 7 N -0.269 5.269 8 C 0.304 3.696 9 O -0.381 6.381 10 C 0.270 3.730 11 O -0.446 6.446 12 N -0.291 5.291 13 C -0.065 4.065 14 C 0.157 3.843 15 H 0.041 0.959 16 C -0.194 4.194 17 C -0.580 4.580 18 H 0.077 0.923 19 C -0.181 4.181 20 N -0.552 5.552 21 Si 0.790 3.210 22 H -0.207 1.207 23 H -0.202 1.202 24 H -0.189 1.189 25 C 0.161 3.839 26 O -0.222 6.222 27 C -0.057 4.057 28 N -0.316 5.316 29 H 0.143 0.857 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.190 0.810 33 H 0.183 0.817 34 H 0.266 0.734 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.044 0.956 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.275 -20.017 2.131 26.527 hybrid contribution 1.000 1.013 0.538 1.522 sum -16.275 -19.004 2.669 25.163 Atomic orbital electron populations 1.23111 0.75642 1.04940 1.02332 1.86285 1.24505 1.23281 1.87422 1.19638 0.89547 0.83592 0.91062 1.21085 0.91409 0.99625 1.10084 1.21536 1.01672 0.89062 0.91530 1.17680 0.89042 0.86220 1.14492 1.42755 1.23028 1.11034 1.50060 1.20082 0.81712 0.89120 0.78715 1.90612 1.59075 1.43651 1.44798 1.20128 0.82448 0.88799 0.81619 1.90706 1.61768 1.46128 1.45954 1.48231 1.25282 1.11168 1.44395 1.22256 0.98740 0.88115 0.97375 1.18823 0.93658 0.77270 0.94532 0.95904 1.21924 0.98028 1.03267 0.96148 1.21464 0.98144 0.96167 1.42244 0.92251 1.25684 1.02385 0.94951 0.95079 1.69985 1.38739 1.00640 1.45834 0.85505 0.79414 0.77356 0.78732 1.20716 1.20250 1.18931 1.19145 0.86925 0.84948 0.92893 1.86277 1.21407 1.27131 1.87395 1.23125 0.75359 1.04570 1.02652 1.66827 1.40703 0.97750 1.26328 0.85727 0.92253 0.92482 0.81014 0.81747 0.73388 0.92586 0.87763 0.91003 0.93320 0.95645 0.90681 0.92432 0.92097 0.91664 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.38 113.37 1.18 1.57 16 2 O -0.31 -5.51 10.47 -90.51 -0.95 -6.46 16 3 C 0.34 7.12 7.48 84.75 0.63 7.75 16 4 C -0.20 -3.99 10.03 22.46 0.23 -3.76 16 5 C -0.01 -0.27 8.80 22.55 0.20 -0.07 16 6 C 0.02 0.58 6.35 38.33 0.24 0.82 16 7 N -0.62 -18.19 5.19 -304.08 -1.58 -19.77 16 8 C 0.52 17.71 7.63 87.22 0.67 18.38 16 9 O -0.51 -16.67 10.59 -3.42 -0.04 -16.70 16 10 C 0.49 20.61 7.73 87.23 0.67 21.29 16 11 O -0.56 -26.99 15.82 -3.30 -0.05 -27.04 16 12 N -0.56 -24.70 2.75 -828.55 -2.28 -26.98 16 13 C 0.08 2.79 8.75 127.77 1.12 3.91 16 14 C 0.26 13.35 2.62 44.25 0.12 13.47 16 15 H 0.02 1.38 6.90 -2.39 -0.02 1.36 16 16 C -0.14 -6.45 8.96 71.98 0.64 -5.81 16 17 C -0.54 -29.39 8.37 25.60 0.21 -29.17 16 18 H 0.06 3.17 7.65 -2.91 -0.02 3.14 16 19 C 0.02 1.04 5.30 84.65 0.45 1.49 16 20 N -0.91 -51.61 11.32 21.45 0.24 -51.37 16 21 Si 0.97 42.77 29.54 68.60 2.03 44.80 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 25 C 0.34 8.37 7.51 84.91 0.64 9.01 16 26 O -0.32 -7.24 10.04 -90.41 -0.91 -8.15 16 27 C 0.04 0.56 10.38 113.37 1.18 1.74 16 28 N -0.58 -12.75 8.05 -421.41 -3.39 -16.15 16 29 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.68 8.10 -2.39 -0.02 0.66 16 31 H 0.06 0.68 8.10 -2.39 -0.02 0.66 16 32 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.17 3.93 6.28 -2.91 -0.02 3.91 16 34 H 0.43 12.24 8.04 -92.71 -0.75 11.49 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.10 3.46 5.36 -2.47 -0.01 3.44 16 37 H 0.07 2.56 6.44 -2.38 -0.02 2.55 16 38 H 0.05 2.13 6.67 -2.38 -0.02 2.11 16 39 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.07 3.94 6.07 -2.39 -0.01 3.92 16 41 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 42 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 43 H 0.06 0.89 8.11 -2.39 -0.02 0.87 16 44 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -66.27 370.16 1.56 -64.72 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.31 Total: 22.48 kcal Atomic # 6 Polarization: 32.44 SS G_CDS: 8.17 Total: 40.62 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -7.01 Total: -114.26 kcal Atomic # 8 Polarization: -56.41 SS G_CDS: -1.94 Total: -58.36 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -66.27 1.56 -64.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615249783.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.850 kcal (2) G-P(sol) polarization free energy of solvation -66.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds