Wall clock time and date at job start Tue Mar 31 2020 21:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35735 * 116.99666 * 2 1 4 4 C 1.38776 * 119.57358 * 180.02562 * 3 2 1 5 5 C 1.38506 * 119.30476 * 180.02562 * 4 3 2 6 6 C 1.39139 * 118.48120 * 0.02562 * 5 4 3 7 7 N 1.40034 * 120.45048 * 180.02562 * 6 5 4 8 8 C 1.34777 * 120.00007 * 17.32201 * 7 6 5 9 9 O 1.21399 * 119.99712 * 5.49059 * 8 7 6 10 10 C 1.49311 * 119.99824 * 185.49182 * 8 7 6 11 11 O 1.21369 * 120.00322 * 6.36532 * 10 8 7 12 12 N 1.34778 * 120.00175 * 186.37052 * 10 8 7 13 13 C 1.46508 * 119.99587 * 5.45220 * 12 10 8 14 14 C 1.46496 * 120.00487 * 185.45075 * 12 10 8 15 15 H 1.08999 * 109.46591 * 359.97438 * 14 12 10 16 16 C 1.52998 * 109.47251 * 119.99870 * 14 12 10 17 17 C 1.50708 * 109.46960 * 239.99930 * 14 12 10 18 18 H 1.07998 * 119.99948 * 354.74713 * 17 14 12 19 19 C 1.37874 * 119.99635 * 174.74537 * 17 14 12 20 20 N 1.31515 * 120.00269 * 356.45540 * 19 17 14 21 21 Si 1.86802 * 119.99906 * 176.72623 * 19 17 14 22 22 H 1.48494 * 109.47640 * 264.74282 * 21 19 17 23 23 H 1.48504 * 109.46671 * 24.74274 * 21 19 17 24 24 H 1.48502 * 109.47075 * 144.74060 * 21 19 17 25 25 C 1.39414 * 119.10253 * 0.26772 * 6 5 4 26 26 O 1.35713 * 119.70049 * 179.73104 * 25 6 5 27 27 C 1.42905 * 117.00238 * 180.02562 * 26 25 6 28 28 N 1.32263 * 120.60189 * 359.43854 * 25 6 5 29 29 H 1.09006 * 109.46834 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47098 * 300.00431 * 1 2 3 31 31 H 1.08995 * 109.47290 * 60.00766 * 1 2 3 32 32 H 1.07999 * 120.34412 * 0.03018 * 4 3 2 33 33 H 1.08002 * 120.75708 * 179.97438 * 5 4 3 34 34 H 0.97003 * 119.99934 * 197.31804 * 7 6 5 35 35 H 1.09008 * 109.46382 * 275.49476 * 13 12 10 36 36 H 1.08998 * 109.47138 * 35.48844 * 13 12 10 37 37 H 1.08993 * 109.46980 * 155.49442 * 13 12 10 38 38 H 1.08999 * 109.46820 * 178.95484 * 16 14 12 39 39 H 1.09001 * 109.46719 * 298.95855 * 16 14 12 40 40 H 1.08997 * 109.47129 * 58.95996 * 16 14 12 41 41 H 0.97002 * 120.00285 * 180.26959 * 20 19 17 42 42 H 1.08999 * 109.47257 * 180.02562 * 27 26 25 43 43 H 1.08999 * 109.46927 * 299.99724 * 27 26 25 44 44 H 1.08995 * 109.47073 * 59.99727 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4315 1.2718 -0.0005 5 6 4.0545 2.5089 0.0000 6 6 3.2606 3.6516 0.0016 7 7 3.8470 4.9232 0.0017 8 6 5.1407 5.0687 -0.3473 9 8 5.7698 4.1147 -0.7569 10 6 5.8000 6.4032 -0.2300 11 8 5.2088 7.3289 0.2864 12 7 7.0516 6.5800 -0.6976 13 6 7.7204 5.4996 -1.4269 14 6 7.7433 7.8524 -0.4768 15 1 7.0927 8.5278 0.0787 16 6 9.0241 7.6046 0.3225 17 6 8.0923 8.4716 -1.8057 18 1 7.9024 7.9298 -2.7205 19 6 8.6540 9.7298 -1.8536 20 7 8.8210 10.4181 -0.7454 21 14 9.1709 10.4601 -3.4934 22 1 10.6155 10.1997 -3.7181 23 1 8.3799 9.8361 -4.5844 24 1 8.9281 11.9251 -3.4814 25 6 1.8733 3.5134 0.0083 26 8 1.0874 4.6198 0.0155 27 6 -0.3264 4.4113 0.0227 28 7 1.3161 2.3139 0.0019 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 4.0185 0.3653 -0.0014 33 1 5.1318 2.5848 0.0000 34 1 3.3222 5.6993 0.2528 35 1 8.1860 4.8160 -0.7168 36 1 6.9884 4.9580 -2.0259 37 1 8.4844 5.9209 -2.0802 38 1 9.5481 8.5488 0.4708 39 1 8.7702 7.1738 1.2911 40 1 9.6663 6.9148 -0.2249 41 1 9.2126 11.3049 -0.7796 42 1 -0.8357 5.3750 0.0276 43 1 -0.6157 3.8524 -0.8672 44 1 -0.6060 3.8477 0.9127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615249788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:55 Heat of formation + Delta-G solvation = -77.922669 kcal Electronic energy + Delta-G solvation = -29331.985901 eV Core-core repulsion = 25059.008613 eV Total energy + Delta-G solvation = -4272.977288 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.48452 -40.32191 -39.13899 -38.32478 -37.14490 -35.88781 -34.74023 -32.75861 -32.11808 -30.00357 -29.57161 -28.13205 -26.86466 -26.24898 -25.29370 -24.74163 -23.43662 -22.86196 -20.79251 -19.56403 -19.05182 -18.14238 -17.72018 -17.06487 -16.68001 -16.43517 -16.15945 -15.98205 -15.78464 -15.43587 -15.22901 -15.09617 -14.39403 -14.01705 -13.95312 -13.68131 -13.33705 -13.28003 -13.09429 -12.54719 -12.39804 -12.32361 -11.97177 -11.93637 -11.73692 -11.69618 -11.28527 -11.08234 -10.93146 -10.80072 -10.77711 -10.59009 -10.37310 -10.28055 -10.19267 -9.63504 -9.25571 -8.79156 -8.48822 -7.87070 -7.72421 -6.13873 -4.20886 0.83549 1.02997 1.88314 2.54014 2.70596 2.90321 3.24915 3.32411 3.35479 3.44963 3.71792 3.90535 4.03410 4.35945 4.62238 4.69108 4.91897 4.97929 4.98827 5.00940 5.04519 5.14332 5.19505 5.28306 5.36690 5.52695 5.70245 5.96306 6.05486 6.19630 6.37731 6.52942 6.58803 6.63189 6.69212 6.89785 7.02438 7.12574 7.23397 7.37067 7.44711 7.60819 7.77304 7.91574 8.05486 8.31294 8.58159 8.84448 9.44931 10.93271 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.022358 B = 0.002493 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.045786 B =11230.158300 C =11746.126023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.305 6.305 3 C 0.332 3.668 4 C -0.200 4.200 5 C -0.035 4.035 6 C 0.057 3.943 7 N -0.630 5.630 8 C 0.508 3.492 9 O -0.504 6.504 10 C 0.495 3.505 11 O -0.531 6.531 12 N -0.552 5.552 13 C 0.081 3.919 14 C 0.253 3.747 15 H 0.071 0.929 16 C -0.142 4.142 17 C -0.529 4.529 18 H 0.062 0.938 19 C 0.067 3.933 20 N -0.886 5.886 21 Si 0.900 3.100 22 H -0.280 1.280 23 H -0.273 1.273 24 H -0.285 1.285 25 C 0.334 3.666 26 O -0.304 6.304 27 C 0.044 3.956 28 N -0.573 5.573 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.148 0.852 33 H 0.184 0.816 34 H 0.428 0.572 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.016 0.984 40 H 0.035 0.965 41 H 0.265 0.735 42 H 0.099 0.901 43 H 0.058 0.942 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.024 -18.048 2.352 23.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.212 6.212 3 C 0.155 3.845 4 C -0.221 4.221 5 C -0.062 4.062 6 C -0.041 4.041 7 N -0.276 5.276 8 C 0.293 3.707 9 O -0.380 6.380 10 C 0.275 3.725 11 O -0.409 6.409 12 N -0.283 5.283 13 C -0.062 4.062 14 C 0.154 3.846 15 H 0.089 0.911 16 C -0.201 4.201 17 C -0.567 4.567 18 H 0.081 0.919 19 C -0.136 4.136 20 N -0.523 5.523 21 Si 0.727 3.273 22 H -0.206 1.206 23 H -0.198 1.198 24 H -0.211 1.211 25 C 0.153 3.847 26 O -0.211 6.211 27 C -0.051 4.051 28 N -0.312 5.312 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.166 0.834 33 H 0.200 0.800 34 H 0.267 0.733 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.035 0.965 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.117 0.883 43 H 0.077 0.923 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.478 -18.025 2.402 23.880 hybrid contribution 0.295 0.771 -0.784 1.139 sum -15.183 -17.254 1.618 23.040 Atomic orbital electron populations 1.22834 0.77458 1.02906 1.02274 1.86274 1.22708 1.24189 1.88040 1.19387 0.89151 0.83185 0.92823 1.20922 0.91197 0.99446 1.10527 1.22007 1.02901 0.88490 0.92772 1.17670 0.88641 0.86815 1.11006 1.43005 1.11646 1.08121 1.64866 1.20959 0.81686 0.90925 0.77179 1.90570 1.63499 1.41145 1.42799 1.19527 0.83716 0.87082 0.82186 1.90746 1.63280 1.41615 1.45296 1.48255 1.12640 1.17368 1.49996 1.21950 0.98622 0.89042 0.96564 1.19185 0.90213 0.78321 0.96879 0.91087 1.22039 0.99403 1.02142 0.96488 1.21261 1.41935 1.01592 0.91960 0.91937 1.24895 0.95477 0.96433 0.96834 1.69927 1.43653 1.12109 1.26636 0.86456 0.78826 0.78419 0.83579 1.20560 1.19824 1.21070 1.18922 0.86787 0.84537 0.94483 1.86240 1.19830 1.27184 1.87858 1.22864 0.76993 1.03040 1.02246 1.66747 1.40757 0.97891 1.25798 0.88644 0.92446 0.92438 0.83380 0.79975 0.73317 0.93090 0.90774 0.90400 0.89661 0.96517 0.94606 0.92566 0.88287 0.92333 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.38 101.05 1.05 1.34 16 2 O -0.31 -3.18 10.48 -18.91 -0.20 -3.38 16 3 C 0.33 3.91 7.48 -17.14 -0.13 3.78 16 4 C -0.20 -2.25 10.03 -39.28 -0.39 -2.64 16 5 C -0.04 -0.45 8.91 -39.15 -0.35 -0.80 16 6 C 0.06 0.78 6.57 -83.34 -0.55 0.23 16 7 N -0.63 -9.36 5.33 -10.06 -0.05 -9.42 16 8 C 0.51 8.62 7.56 -11.65 -0.09 8.54 16 9 O -0.50 -8.38 10.24 5.45 0.06 -8.32 16 10 C 0.49 10.18 7.72 -11.65 -0.09 10.09 16 11 O -0.53 -12.23 15.85 5.48 0.09 -12.14 16 12 N -0.55 -11.85 2.75 -175.82 -0.48 -12.33 16 13 C 0.08 1.47 8.13 59.85 0.49 1.96 16 14 C 0.25 6.32 2.50 -69.08 -0.17 6.14 16 15 H 0.07 2.03 6.90 -51.93 -0.36 1.67 16 16 C -0.14 -3.28 9.05 37.16 0.34 -2.94 16 17 C -0.53 -14.01 7.98 -34.44 -0.27 -14.29 16 18 H 0.06 1.64 7.24 -52.49 -0.38 1.26 16 19 C 0.07 1.79 5.28 -17.82 -0.09 1.69 16 20 N -0.89 -24.67 11.87 55.43 0.66 -24.01 16 21 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.33 4.31 7.51 -16.93 -0.13 4.19 16 26 O -0.30 -3.63 9.81 -18.85 -0.18 -3.81 16 27 C 0.04 0.36 10.38 101.05 1.05 1.41 16 28 N -0.57 -6.93 8.06 -13.23 -0.11 -7.04 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 32 H 0.15 1.34 8.06 -52.49 -0.42 0.91 16 33 H 0.18 2.40 5.38 -52.49 -0.28 2.11 16 34 H 0.43 6.17 7.73 -40.82 -0.32 5.86 16 35 H 0.05 0.84 8.09 -51.92 -0.42 0.42 16 36 H 0.07 1.27 5.99 -51.93 -0.31 0.96 16 37 H 0.08 1.44 7.02 -51.93 -0.36 1.07 16 38 H 0.08 2.14 6.62 -51.93 -0.34 1.79 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.03 0.76 7.64 -51.93 -0.40 0.36 16 41 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 44 H 0.06 0.45 8.11 -51.93 -0.42 0.03 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -30.45 370.54 -4.69 -35.14 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -5.68 Total: 5.30 kcal Atomic # 6 Polarization: 18.05 SS G_CDS: 0.66 Total: 18.71 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: 0.01 Total: -52.80 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.24 Total: -27.65 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.45 -4.69 -35.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615249788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.783 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds