Wall clock time and date at job start Tue Mar 31 2020 21:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35735 * 116.99666 * 2 1 4 4 C 1.38776 * 119.57358 * 180.02562 * 3 2 1 5 5 C 1.38506 * 119.30476 * 180.02562 * 4 3 2 6 6 C 1.39139 * 118.48120 * 0.02562 * 5 4 3 7 7 N 1.40034 * 120.45048 * 180.02562 * 6 5 4 8 8 C 1.34777 * 120.00007 * 17.32201 * 7 6 5 9 9 O 1.21399 * 119.99712 * 5.49059 * 8 7 6 10 10 C 1.49311 * 119.99824 * 185.49182 * 8 7 6 11 11 O 1.21369 * 120.00322 * 6.36532 * 10 8 7 12 12 N 1.34778 * 120.00175 * 186.37052 * 10 8 7 13 13 C 1.46508 * 119.99587 * 5.45220 * 12 10 8 14 14 C 1.46496 * 120.00487 * 185.45075 * 12 10 8 15 15 H 1.08999 * 109.46591 * 359.97438 * 14 12 10 16 16 C 1.52998 * 109.47251 * 119.99870 * 14 12 10 17 17 C 1.50708 * 109.46960 * 239.99930 * 14 12 10 18 18 H 1.07998 * 119.99948 * 354.74713 * 17 14 12 19 19 C 1.37874 * 119.99635 * 174.74537 * 17 14 12 20 20 N 1.31515 * 120.00269 * 356.45540 * 19 17 14 21 21 Si 1.86802 * 119.99906 * 176.72623 * 19 17 14 22 22 H 1.48494 * 109.47640 * 264.74282 * 21 19 17 23 23 H 1.48504 * 109.46671 * 24.74274 * 21 19 17 24 24 H 1.48502 * 109.47075 * 144.74060 * 21 19 17 25 25 C 1.39414 * 119.10253 * 0.26772 * 6 5 4 26 26 O 1.35713 * 119.70049 * 179.73104 * 25 6 5 27 27 C 1.42905 * 117.00238 * 180.02562 * 26 25 6 28 28 N 1.32263 * 120.60189 * 359.43854 * 25 6 5 29 29 H 1.09006 * 109.46834 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47098 * 300.00431 * 1 2 3 31 31 H 1.08995 * 109.47290 * 60.00766 * 1 2 3 32 32 H 1.07999 * 120.34412 * 0.03018 * 4 3 2 33 33 H 1.08002 * 120.75708 * 179.97438 * 5 4 3 34 34 H 0.97003 * 119.99934 * 197.31804 * 7 6 5 35 35 H 1.09008 * 109.46382 * 275.49476 * 13 12 10 36 36 H 1.08998 * 109.47138 * 35.48844 * 13 12 10 37 37 H 1.08993 * 109.46980 * 155.49442 * 13 12 10 38 38 H 1.08999 * 109.46820 * 178.95484 * 16 14 12 39 39 H 1.09001 * 109.46719 * 298.95855 * 16 14 12 40 40 H 1.08997 * 109.47129 * 58.95996 * 16 14 12 41 41 H 0.97002 * 120.00285 * 180.26959 * 20 19 17 42 42 H 1.08999 * 109.47257 * 180.02562 * 27 26 25 43 43 H 1.08999 * 109.46927 * 299.99724 * 27 26 25 44 44 H 1.08995 * 109.47073 * 59.99727 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4315 1.2718 -0.0005 5 6 4.0545 2.5089 0.0000 6 6 3.2606 3.6516 0.0016 7 7 3.8470 4.9232 0.0017 8 6 5.1407 5.0687 -0.3473 9 8 5.7698 4.1147 -0.7569 10 6 5.8000 6.4032 -0.2300 11 8 5.2088 7.3289 0.2864 12 7 7.0516 6.5800 -0.6976 13 6 7.7204 5.4996 -1.4269 14 6 7.7433 7.8524 -0.4768 15 1 7.0927 8.5278 0.0787 16 6 9.0241 7.6046 0.3225 17 6 8.0923 8.4716 -1.8057 18 1 7.9024 7.9298 -2.7205 19 6 8.6540 9.7298 -1.8536 20 7 8.8210 10.4181 -0.7454 21 14 9.1709 10.4601 -3.4934 22 1 10.6155 10.1997 -3.7181 23 1 8.3799 9.8361 -4.5844 24 1 8.9281 11.9251 -3.4814 25 6 1.8733 3.5134 0.0083 26 8 1.0874 4.6198 0.0155 27 6 -0.3264 4.4113 0.0227 28 7 1.3161 2.3139 0.0019 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 4.0185 0.3653 -0.0014 33 1 5.1318 2.5848 0.0000 34 1 3.3222 5.6993 0.2528 35 1 8.1860 4.8160 -0.7168 36 1 6.9884 4.9580 -2.0259 37 1 8.4844 5.9209 -2.0802 38 1 9.5481 8.5488 0.4708 39 1 8.7702 7.1738 1.2911 40 1 9.6663 6.9148 -0.2249 41 1 9.2126 11.3049 -0.7796 42 1 -0.8357 5.3750 0.0276 43 1 -0.6157 3.8524 -0.8672 44 1 -0.6060 3.8477 0.9127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615249788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:53 Heat of formation + Delta-G solvation = -101.346349 kcal Electronic energy + Delta-G solvation = -29333.001628 eV Core-core repulsion = 25059.008613 eV Total energy + Delta-G solvation = -4273.993015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.55829 -41.58677 -40.05087 -39.73034 -38.11134 -37.51705 -36.05400 -34.66538 -33.06698 -31.53694 -30.88200 -28.82947 -27.91968 -27.51473 -27.28879 -26.10526 -24.37050 -24.03935 -22.32835 -20.93936 -20.00864 -19.35921 -18.78157 -18.55561 -18.20739 -17.72969 -17.49484 -17.08427 -16.88680 -16.67380 -16.53281 -16.06228 -15.99470 -15.40449 -14.98739 -14.80652 -14.59443 -14.42844 -14.20974 -14.11457 -13.97047 -13.60123 -13.23706 -12.95977 -12.87697 -12.83066 -12.71918 -12.66312 -12.62280 -12.31181 -12.28482 -12.21234 -12.06986 -11.44793 -11.27149 -11.21165 -10.65720 -10.54804 -10.20925 -9.53410 -8.79860 -8.17315 -6.31878 -0.23839 0.09025 0.53909 1.21067 1.43530 1.44862 1.55138 1.84266 2.07018 2.10699 2.39382 2.56540 2.60994 3.11424 3.13458 3.26113 3.69469 3.97423 4.19012 4.39617 4.40123 4.44361 4.44565 4.49139 4.60574 4.69393 4.71649 4.74152 4.76552 4.79215 4.87495 4.98231 5.00194 5.15381 5.37649 5.38858 5.41963 5.62642 5.76154 5.81541 5.95970 6.08312 6.22715 6.43459 6.52802 6.65092 6.74899 6.99282 7.38402 8.89375 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.022358 B = 0.002493 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.045786 B =11230.158300 C =11746.126023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.309 6.309 3 C 0.332 3.668 4 C -0.197 4.197 5 C -0.034 4.034 6 C 0.030 3.970 7 N -0.619 5.619 8 C 0.519 3.481 9 O -0.501 6.501 10 C 0.488 3.512 11 O -0.564 6.564 12 N -0.561 5.561 13 C 0.085 3.915 14 C 0.257 3.743 15 H 0.026 0.974 16 C -0.129 4.129 17 C -0.541 4.541 18 H 0.063 0.937 19 C 0.019 3.981 20 N -0.916 5.916 21 Si 0.964 3.036 22 H -0.269 1.269 23 H -0.270 1.270 24 H -0.286 1.286 25 C 0.333 3.667 26 O -0.317 6.317 27 C 0.038 3.962 28 N -0.573 5.573 29 H 0.124 0.876 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.172 0.828 33 H 0.180 0.820 34 H 0.429 0.571 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.027 0.973 40 H 0.052 0.948 41 H 0.266 0.734 42 H 0.121 0.879 43 H 0.061 0.939 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.759 -20.205 1.466 25.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.216 6.216 3 C 0.153 3.847 4 C -0.218 4.218 5 C -0.061 4.061 6 C -0.067 4.067 7 N -0.265 5.265 8 C 0.302 3.698 9 O -0.377 6.377 10 C 0.270 3.730 11 O -0.445 6.445 12 N -0.291 5.291 13 C -0.057 4.057 14 C 0.156 3.844 15 H 0.044 0.956 16 C -0.187 4.187 17 C -0.579 4.579 18 H 0.081 0.919 19 C -0.181 4.181 20 N -0.554 5.554 21 Si 0.789 3.211 22 H -0.194 1.194 23 H -0.195 1.195 24 H -0.211 1.211 25 C 0.153 3.847 26 O -0.224 6.224 27 C -0.056 4.056 28 N -0.312 5.312 29 H 0.142 0.858 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.189 0.811 33 H 0.196 0.804 34 H 0.267 0.733 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.046 0.954 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.139 0.861 43 H 0.080 0.920 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.241 -20.238 1.510 25.993 hybrid contribution 0.342 1.330 -0.460 1.448 sum -15.899 -18.909 1.050 24.727 Atomic orbital electron populations 1.23099 0.75727 1.04893 1.02277 1.86285 1.24433 1.23296 1.87584 1.19650 0.89592 0.83576 0.91833 1.21135 0.91345 0.99694 1.09580 1.21998 1.02692 0.88804 0.92575 1.17816 0.89304 0.86234 1.13310 1.42806 1.10674 1.08936 1.64036 1.20049 0.82422 0.89139 0.78195 1.90570 1.63686 1.40270 1.43205 1.20137 0.83351 0.88334 0.81174 1.90718 1.64006 1.43264 1.46501 1.48225 1.13194 1.17066 1.50637 1.22069 0.98645 0.88207 0.96762 1.18833 0.90152 0.79369 0.96046 0.95646 1.21840 0.98499 1.01343 0.97063 1.21515 1.41849 1.02028 0.92522 0.91922 1.25698 0.95486 0.96857 1.00100 1.70052 1.44342 1.12414 1.28616 0.85451 0.78847 0.77305 0.79473 1.19401 1.19452 1.21147 1.18971 0.86690 0.85052 0.94020 1.86236 1.21467 1.27116 1.87620 1.23118 0.75269 1.04595 1.02620 1.66807 1.40660 0.97722 1.26002 0.85760 0.92350 0.92492 0.81067 0.80361 0.73279 0.91227 0.89662 0.90841 0.91991 0.95363 0.92905 0.92502 0.86105 0.92050 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.38 113.37 1.18 1.59 16 2 O -0.31 -5.69 10.48 -90.59 -0.95 -6.64 16 3 C 0.33 7.13 7.48 84.75 0.63 7.77 16 4 C -0.20 -4.02 10.03 22.46 0.23 -3.79 16 5 C -0.03 -0.83 8.91 22.55 0.20 -0.63 16 6 C 0.03 0.81 6.57 38.33 0.25 1.07 16 7 N -0.62 -18.28 5.33 -304.09 -1.62 -19.90 16 8 C 0.52 17.46 7.56 87.23 0.66 18.11 16 9 O -0.50 -16.06 10.24 -3.40 -0.03 -16.10 16 10 C 0.49 20.42 7.72 87.23 0.67 21.10 16 11 O -0.56 -26.99 15.85 -3.31 -0.05 -27.04 16 12 N -0.56 -24.26 2.75 -828.51 -2.28 -26.54 16 13 C 0.08 2.98 8.13 127.77 1.04 4.02 16 14 C 0.26 13.12 2.50 44.25 0.11 13.23 16 15 H 0.03 1.53 6.90 -2.39 -0.02 1.51 16 16 C -0.13 -6.00 9.05 71.98 0.65 -5.34 16 17 C -0.54 -28.96 7.98 25.60 0.20 -28.76 16 18 H 0.06 3.28 7.24 -2.91 -0.02 3.26 16 19 C 0.02 1.02 5.28 84.65 0.45 1.46 16 20 N -0.92 -52.08 11.87 21.45 0.25 -51.82 16 21 Si 0.96 42.57 29.54 68.60 2.03 44.60 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 24 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 25 C 0.33 8.28 7.51 84.91 0.64 8.92 16 26 O -0.32 -7.29 9.81 -90.35 -0.89 -8.18 16 27 C 0.04 0.58 10.38 113.37 1.18 1.76 16 28 N -0.57 -12.93 8.06 -421.41 -3.39 -16.32 16 29 H 0.12 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.06 0.70 8.10 -2.39 -0.02 0.68 16 31 H 0.06 0.70 8.10 -2.39 -0.02 0.68 16 32 H 0.17 2.62 8.06 -2.91 -0.02 2.59 16 33 H 0.18 4.44 5.38 -2.91 -0.02 4.42 16 34 H 0.43 12.52 7.73 -92.71 -0.72 11.80 16 35 H 0.07 2.18 8.09 -2.38 -0.02 2.16 16 36 H 0.09 2.81 5.99 -2.39 -0.01 2.79 16 37 H 0.07 2.63 7.02 -2.39 -0.02 2.62 16 38 H 0.06 3.17 6.62 -2.39 -0.02 3.15 16 39 H 0.03 1.19 8.14 -2.39 -0.02 1.18 16 40 H 0.05 2.22 7.64 -2.39 -0.02 2.20 16 41 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 42 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 44 H 0.06 0.89 8.11 -2.39 -0.02 0.87 16 Total: -1.00 -66.04 370.54 1.49 -64.55 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.34 Total: 22.88 kcal Atomic # 6 Polarization: 32.41 SS G_CDS: 8.09 Total: 40.50 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -7.04 Total: -114.59 kcal Atomic # 8 Polarization: -56.03 SS G_CDS: -1.92 Total: -57.95 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -66.04 1.49 -64.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615249788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.791 kcal (2) G-P(sol) polarization free energy of solvation -66.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds