Wall clock time and date at job start Tue Mar 31 2020 22:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47539 * 2 1 4 4 C 1.46500 * 120.00282 * 270.00416 * 3 2 1 5 5 C 1.50704 * 109.46716 * 269.99941 * 4 3 2 6 6 H 1.07998 * 120.00154 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00084 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00086 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99901 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46965 * 90.00243 * 9 7 5 11 11 H 1.48501 * 109.47201 * 210.00295 * 9 7 5 12 12 H 1.48500 * 109.47442 * 330.00565 * 9 7 5 13 13 C 1.34775 * 120.00135 * 89.99624 * 3 2 1 14 14 O 1.21279 * 120.00300 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99773 * 0.02562 * 13 3 2 16 16 O 1.45206 * 109.47147 * 179.97438 * 15 13 3 17 17 C 1.34715 * 117.00191 * 179.97438 * 16 15 13 18 18 O 1.21473 * 119.99809 * 0.02562 * 17 16 15 19 19 C 1.47757 * 120.00437 * 179.97438 * 17 16 15 20 20 C 1.41610 * 119.90505 * 180.02562 * 19 17 16 21 21 C 1.36318 * 118.23892 * 180.02562 * 20 19 17 22 22 C 1.41268 * 117.94041 * 359.97438 * 21 20 19 23 23 O 1.21967 * 120.22210 * 180.02562 * 22 21 20 24 24 N 1.34610 * 119.55959 * 359.97438 * 22 21 20 25 25 C 1.46502 * 119.09880 * 180.02562 * 24 22 21 26 26 C 1.52999 * 109.46808 * 90.00279 * 25 24 22 27 27 N 1.28394 * 121.80347 * 359.72387 * 24 22 21 28 28 H 1.09003 * 109.47221 * 300.00363 * 1 2 3 29 29 H 1.09006 * 109.46809 * 60.00184 * 1 2 3 30 30 H 1.09005 * 109.47543 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47221 * 239.99637 * 2 1 3 32 32 H 1.09002 * 109.46764 * 120.00327 * 2 1 3 33 33 H 1.08997 * 109.47188 * 29.99019 * 4 3 2 34 34 H 1.09000 * 109.47702 * 149.99942 * 4 3 2 35 35 H 0.97003 * 119.99677 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.46980 * 59.99839 * 15 13 3 37 37 H 1.09004 * 109.47113 * 299.99819 * 15 13 3 38 38 H 1.08003 * 120.88134 * 0.02562 * 20 19 17 39 39 H 1.08003 * 121.02491 * 180.02562 * 21 20 19 40 40 H 1.08998 * 109.47114 * 210.00758 * 25 24 22 41 41 H 1.08999 * 109.46712 * 330.00398 * 25 24 22 42 42 H 1.08996 * 109.46896 * 179.97438 * 26 25 24 43 43 H 1.08990 * 109.47436 * 299.99876 * 26 25 24 44 44 H 1.09005 * 109.46798 * 60.00156 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0958 7 6 4.1495 2.3903 -2.8774 8 7 5.3917 2.1840 -3.2568 9 14 3.0133 3.4360 -3.9286 10 1 3.1161 4.8561 -3.5067 11 1 3.4069 3.3138 -5.3553 12 1 1.6137 2.9696 -3.7595 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1600 1.1672 15 6 1.9922 1.3059 2.4723 16 8 2.3072 2.1953 3.5760 17 6 2.1355 1.7099 4.8208 18 8 1.7341 0.5745 4.9800 19 6 2.4365 2.5581 5.9927 20 6 2.2557 2.0455 7.3003 21 6 2.5433 2.8575 8.3569 22 6 3.0056 4.1636 8.0812 23 8 3.2757 4.9249 8.9951 24 7 3.1471 4.5621 6.8033 25 6 3.6279 5.9186 6.5290 26 6 5.1549 5.9088 6.4338 27 7 2.8777 3.7841 5.8181 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6877 -2.0284 34 1 2.0957 3.1410 -1.1384 35 1 5.7178 2.5745 -4.0827 36 1 2.6227 0.4186 2.5298 37 1 0.9443 1.0114 2.5302 38 1 1.8995 1.0380 7.4565 39 1 2.4221 2.5126 9.3731 40 1 3.2073 6.2695 5.5867 41 1 3.3183 6.5836 7.3352 42 1 5.5126 6.9179 6.2293 43 1 5.5755 5.5579 7.3761 44 1 5.4644 5.2436 5.6276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732374177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:08 Heat of formation + Delta-G solvation = -74.140640 kcal Electronic energy + Delta-G solvation = -28901.015880 eV Core-core repulsion = 24628.202594 eV Total energy + Delta-G solvation = -4272.813287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.59837 -40.62933 -39.13444 -38.18564 -36.71243 -35.78353 -35.44976 -32.79754 -32.47847 -31.29776 -30.48394 -29.35944 -27.26219 -26.35796 -25.17279 -23.30394 -23.08187 -22.52336 -21.79485 -19.37479 -18.82974 -18.24624 -17.34321 -17.18286 -17.03611 -16.93545 -16.57815 -16.43156 -16.01997 -15.39871 -14.78669 -14.58144 -14.30558 -14.09621 -13.95564 -13.74561 -13.59400 -13.49862 -13.13896 -12.79107 -12.70788 -12.50558 -12.43079 -12.24781 -12.01765 -11.87976 -11.57548 -11.50365 -11.10342 -11.05910 -10.95799 -10.95021 -10.66577 -10.54804 -10.21615 -10.20227 -9.59060 -9.15604 -9.05889 -8.62532 -7.85824 -6.12239 -4.11692 -0.01457 0.57862 1.58058 2.15643 2.17843 3.01856 3.12741 3.26536 3.32213 3.34336 3.41140 3.72348 4.11442 4.28688 4.36166 4.43959 4.63285 4.63775 4.71636 4.86835 4.97555 5.06408 5.09223 5.14466 5.21020 5.25928 5.34683 5.38702 5.46075 5.51071 5.58083 5.62274 5.79258 5.88786 6.04814 6.07791 6.32134 6.62037 6.86650 7.04008 7.20036 7.33793 7.55315 7.57227 8.07036 8.41285 8.77916 8.91301 9.47300 11.01039 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.002705 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.297795 B =10347.364776 C =11791.062579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.588 5.588 4 C 0.218 3.782 5 C -0.531 4.531 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.509 3.491 14 O -0.514 6.514 15 C 0.049 3.951 16 O -0.307 6.307 17 C 0.542 3.458 18 O -0.496 6.496 19 C 0.022 3.978 20 C -0.028 4.028 21 C -0.192 4.192 22 C 0.480 3.520 23 O -0.520 6.520 24 N -0.329 5.329 25 C 0.102 3.898 26 C -0.169 4.169 27 N -0.132 5.132 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.038 0.962 35 H 0.265 0.735 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.167 0.833 39 H 0.173 0.827 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.085 0.915 43 H 0.062 0.938 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.909 -1.039 20.007 21.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.023 4.023 3 N -0.321 5.321 4 C 0.098 3.902 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.294 3.706 14 O -0.389 6.389 15 C -0.028 4.028 16 O -0.220 6.220 17 C 0.382 3.618 18 O -0.382 6.382 19 C -0.146 4.146 20 C -0.050 4.050 21 C -0.221 4.221 22 C 0.278 3.722 23 O -0.397 6.397 24 N -0.152 5.152 25 C -0.017 4.017 26 C -0.227 4.227 27 N 0.035 4.965 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.184 0.816 39 H 0.190 0.810 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.291 0.355 19.735 21.409 hybrid contribution -0.619 -0.250 -0.083 0.672 sum -8.910 0.105 19.653 21.578 Atomic orbital electron populations 1.22251 0.96472 1.01905 1.02343 1.21549 0.93655 0.83550 1.03548 1.47866 1.64256 1.13560 1.06420 1.19704 0.97530 0.93443 0.79489 1.21315 0.95261 1.33141 1.07270 0.90666 1.24849 0.94997 0.95756 0.97332 1.69894 1.15117 1.44863 1.23561 0.86856 0.81424 0.81646 0.79795 1.19851 1.21050 1.19035 1.19656 0.79577 0.87156 0.84221 1.90733 1.44047 1.17475 1.86647 1.23060 1.03071 0.92657 0.84031 1.86701 1.77733 1.44155 1.13449 1.19942 0.74595 0.84470 0.82752 1.90886 1.42706 1.18016 1.86545 1.20486 1.09855 0.91418 0.92860 1.22158 0.91557 1.01777 0.89559 1.22658 1.04787 0.92816 1.01877 1.18186 0.81015 0.90193 0.82762 1.90977 1.50898 1.55486 1.42328 1.47202 1.50183 1.14124 1.03736 1.22226 0.96675 0.77689 1.05134 1.22135 0.93163 1.04217 1.03232 1.71398 1.02100 1.03177 1.19842 0.93002 0.91979 0.91659 0.89152 0.91332 0.94864 0.94392 0.92501 0.88056 0.88266 0.81563 0.80991 0.87153 0.87142 0.89623 0.91848 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 10.24 37.16 0.38 -1.60 16 2 C 0.10 1.45 5.93 -4.05 -0.02 1.42 16 3 N -0.59 -11.45 2.46 -175.06 -0.43 -11.88 16 4 C 0.22 5.13 4.23 -5.19 -0.02 5.11 16 5 C -0.53 -14.86 9.94 -34.44 -0.34 -15.20 16 6 H 0.08 2.31 8.06 -52.49 -0.42 1.88 16 7 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 9 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 13 C 0.51 10.06 7.75 -10.98 -0.09 9.98 16 14 O -0.51 -12.50 16.08 -14.10 -0.23 -12.73 16 15 C 0.05 0.72 4.51 36.01 0.16 0.89 16 16 O -0.31 -4.80 9.57 -47.21 -0.45 -5.26 16 17 C 0.54 7.07 7.94 34.62 0.28 7.35 16 18 O -0.50 -6.58 16.17 -19.24 -0.31 -6.89 16 19 C 0.02 0.25 6.84 -82.85 -0.57 -0.32 16 20 C -0.03 -0.23 9.67 -38.99 -0.38 -0.61 16 21 C -0.19 -1.59 10.11 -39.12 -0.40 -1.98 16 22 C 0.48 5.29 7.47 -15.18 -0.11 5.18 16 23 O -0.52 -6.91 16.62 4.95 0.08 -6.83 16 24 N -0.33 -3.58 3.22 -63.33 -0.20 -3.78 16 25 C 0.10 0.89 6.27 -4.04 -0.03 0.86 16 26 C -0.17 -1.40 10.23 37.16 0.38 -1.02 16 27 N -0.13 -1.60 10.68 33.40 0.36 -1.25 16 28 H 0.05 0.57 7.22 -51.93 -0.38 0.19 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 32 H 0.07 0.82 6.44 -51.93 -0.33 0.48 16 33 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 34 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 35 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.10 1.33 7.40 -51.93 -0.38 0.94 16 37 H 0.10 1.20 7.18 -51.93 -0.37 0.83 16 38 H 0.17 0.99 7.72 -52.48 -0.41 0.58 16 39 H 0.17 0.97 8.06 -52.48 -0.42 0.55 16 40 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.11 0.87 7.36 -51.93 -0.38 0.48 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 382.21 15.07 5.76 5.76 Total: -1.00 -36.36 382.21 -6.12 -42.48 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -5.95 Total: -1.66 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: -0.85 Total: 12.04 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.50 Total: -43.34 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.91 Total: -31.70 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.36 -6.12 -42.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732374177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.657 kcal (2) G-P(sol) polarization free energy of solvation -36.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds