Wall clock time and date at job start Tue Mar 31 2020 22:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47539 * 2 1 4 4 C 1.46500 * 120.00282 * 270.00416 * 3 2 1 5 5 C 1.50704 * 109.46716 * 269.99941 * 4 3 2 6 6 H 1.07998 * 120.00154 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00084 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00086 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99901 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46965 * 90.00243 * 9 7 5 11 11 H 1.48501 * 109.47201 * 210.00295 * 9 7 5 12 12 H 1.48500 * 109.47442 * 330.00565 * 9 7 5 13 13 C 1.34775 * 120.00135 * 89.99624 * 3 2 1 14 14 O 1.21279 * 120.00300 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99773 * 0.02562 * 13 3 2 16 16 O 1.45206 * 109.47147 * 179.97438 * 15 13 3 17 17 C 1.34715 * 117.00191 * 179.97438 * 16 15 13 18 18 O 1.21473 * 119.99809 * 0.02562 * 17 16 15 19 19 C 1.47757 * 120.00437 * 179.97438 * 17 16 15 20 20 C 1.41610 * 119.90505 * 180.02562 * 19 17 16 21 21 C 1.36318 * 118.23892 * 180.02562 * 20 19 17 22 22 C 1.41268 * 117.94041 * 359.97438 * 21 20 19 23 23 O 1.21967 * 120.22210 * 180.02562 * 22 21 20 24 24 N 1.34610 * 119.55959 * 359.97438 * 22 21 20 25 25 C 1.46502 * 119.09880 * 180.02562 * 24 22 21 26 26 C 1.52999 * 109.46808 * 90.00279 * 25 24 22 27 27 N 1.28394 * 121.80347 * 359.72387 * 24 22 21 28 28 H 1.09003 * 109.47221 * 300.00363 * 1 2 3 29 29 H 1.09006 * 109.46809 * 60.00184 * 1 2 3 30 30 H 1.09005 * 109.47543 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47221 * 239.99637 * 2 1 3 32 32 H 1.09002 * 109.46764 * 120.00327 * 2 1 3 33 33 H 1.08997 * 109.47188 * 29.99019 * 4 3 2 34 34 H 1.09000 * 109.47702 * 149.99942 * 4 3 2 35 35 H 0.97003 * 119.99677 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.46980 * 59.99839 * 15 13 3 37 37 H 1.09004 * 109.47113 * 299.99819 * 15 13 3 38 38 H 1.08003 * 120.88134 * 0.02562 * 20 19 17 39 39 H 1.08003 * 121.02491 * 180.02562 * 21 20 19 40 40 H 1.08998 * 109.47114 * 210.00758 * 25 24 22 41 41 H 1.08999 * 109.46712 * 330.00398 * 25 24 22 42 42 H 1.08996 * 109.46896 * 179.97438 * 26 25 24 43 43 H 1.08990 * 109.47436 * 299.99876 * 26 25 24 44 44 H 1.09005 * 109.46798 * 60.00156 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0958 7 6 4.1495 2.3903 -2.8774 8 7 5.3917 2.1840 -3.2568 9 14 3.0133 3.4360 -3.9286 10 1 3.1161 4.8561 -3.5067 11 1 3.4069 3.3138 -5.3553 12 1 1.6137 2.9696 -3.7595 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1600 1.1672 15 6 1.9922 1.3059 2.4723 16 8 2.3072 2.1953 3.5760 17 6 2.1355 1.7099 4.8208 18 8 1.7341 0.5745 4.9800 19 6 2.4365 2.5581 5.9927 20 6 2.2557 2.0455 7.3003 21 6 2.5433 2.8575 8.3569 22 6 3.0056 4.1636 8.0812 23 8 3.2757 4.9249 8.9951 24 7 3.1471 4.5621 6.8033 25 6 3.6279 5.9186 6.5290 26 6 5.1549 5.9088 6.4338 27 7 2.8777 3.7841 5.8181 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6877 -2.0284 34 1 2.0957 3.1410 -1.1384 35 1 5.7178 2.5745 -4.0827 36 1 2.6227 0.4186 2.5298 37 1 0.9443 1.0114 2.5302 38 1 1.8995 1.0380 7.4565 39 1 2.4221 2.5126 9.3731 40 1 3.2073 6.2695 5.5867 41 1 3.3183 6.5836 7.3352 42 1 5.5126 6.9179 6.2293 43 1 5.5755 5.5579 7.3761 44 1 5.4644 5.2436 5.6276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732374177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:07 Heat of formation + Delta-G solvation = -98.672898 kcal Electronic energy + Delta-G solvation = -28902.079679 eV Core-core repulsion = 24628.202594 eV Total energy + Delta-G solvation = -4273.877085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.41715 -41.74592 -40.59275 -39.08781 -37.81592 -37.00285 -36.54793 -34.86788 -33.24384 -32.21439 -31.91264 -30.67908 -28.82823 -27.28681 -25.99289 -24.55735 -24.23792 -23.77864 -22.89947 -20.40160 -20.15736 -19.18215 -19.08496 -18.33110 -18.17812 -17.96517 -17.65681 -17.57851 -17.17607 -16.78985 -16.32014 -15.82961 -15.28176 -15.12867 -14.84173 -14.74101 -14.67622 -14.61756 -14.43992 -14.19990 -13.87145 -13.76002 -13.59836 -13.36442 -13.22870 -13.15399 -12.85215 -12.54875 -12.40564 -12.31541 -12.13688 -12.07166 -12.00429 -11.77505 -11.73063 -11.64879 -11.04425 -10.82309 -10.76112 -9.89005 -9.49840 -8.32957 -6.38296 -0.79615 -0.24084 0.74818 1.14868 1.23468 1.34675 1.38611 1.46565 1.61452 2.21271 2.25098 2.32167 2.70911 3.01634 3.38462 3.40700 3.47257 3.63700 3.91272 3.93924 3.94970 3.99742 4.18087 4.18520 4.38549 4.39407 4.40589 4.62640 4.67936 4.76963 4.79654 4.81012 4.88085 4.89755 4.99135 5.02143 5.04646 5.08836 5.40454 5.46741 5.59069 6.18700 6.23210 6.33789 6.57660 6.63714 6.72663 7.18193 7.31156 8.83931 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.002705 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.297795 B =10347.364776 C =11791.062579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.092 3.908 3 N -0.593 5.593 4 C 0.226 3.774 5 C -0.537 4.537 6 H 0.030 0.970 7 C 0.011 3.989 8 N -0.946 5.946 9 Si 0.946 3.054 10 H -0.277 1.277 11 H -0.276 1.276 12 H -0.235 1.235 13 C 0.500 3.500 14 O -0.573 6.573 15 C 0.059 3.941 16 O -0.333 6.333 17 C 0.545 3.455 18 O -0.494 6.494 19 C 0.019 3.981 20 C -0.018 4.018 21 C -0.181 4.181 22 C 0.469 3.531 23 O -0.549 6.549 24 N -0.329 5.329 25 C 0.095 3.905 26 C -0.163 4.163 27 N -0.160 5.160 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.055 0.945 34 H 0.021 0.979 35 H 0.268 0.732 36 H 0.122 0.878 37 H 0.135 0.865 38 H 0.196 0.804 39 H 0.203 0.797 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.105 0.895 43 H 0.055 0.945 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.527 -2.288 21.039 24.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.030 4.030 3 N -0.325 5.325 4 C 0.104 3.896 5 C -0.576 4.576 6 H 0.049 0.951 7 C -0.187 4.187 8 N -0.586 5.586 9 Si 0.769 3.231 10 H -0.203 1.203 11 H -0.202 1.202 12 H -0.158 1.158 13 C 0.287 3.713 14 O -0.452 6.452 15 C -0.017 4.017 16 O -0.247 6.247 17 C 0.387 3.613 18 O -0.380 6.380 19 C -0.149 4.149 20 C -0.040 4.040 21 C -0.210 4.210 22 C 0.270 3.730 23 O -0.429 6.429 24 N -0.153 5.153 25 C -0.023 4.023 26 C -0.221 4.221 27 N 0.007 4.993 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.073 0.927 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.139 0.861 37 H 0.152 0.848 38 H 0.214 0.786 39 H 0.220 0.780 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.124 0.876 43 H 0.074 0.926 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.948 -0.965 20.774 23.502 hybrid contribution 0.274 0.072 -0.356 0.455 sum -10.674 -0.893 20.418 23.057 Atomic orbital electron populations 1.22189 0.93675 1.03938 1.02307 1.21912 0.95885 0.80672 1.04546 1.47959 1.63938 1.15382 1.05200 1.19365 0.94999 0.93170 0.82028 1.21564 0.97066 1.32173 1.06756 0.95133 1.25840 0.96677 0.97167 0.98977 1.70050 1.17451 1.46567 1.24496 0.85740 0.80621 0.79018 0.77733 1.20261 1.20165 1.15796 1.20533 0.78147 0.86705 0.85872 1.90697 1.46668 1.20166 1.87685 1.22987 1.05503 0.91838 0.81387 1.86693 1.78365 1.45089 1.14510 1.20102 0.74311 0.84688 0.82222 1.90877 1.42766 1.17931 1.86428 1.20612 1.09635 0.91199 0.93421 1.22349 0.91022 1.02851 0.87778 1.22934 1.03447 0.91241 1.03338 1.18668 0.80837 0.91100 0.82390 1.90963 1.52523 1.56483 1.42935 1.47325 1.49828 1.14432 1.03685 1.22406 0.96896 0.77274 1.05767 1.22092 0.92922 1.05015 1.02108 1.71360 1.03302 1.04021 1.20632 0.91990 0.93103 0.88526 0.90171 0.88471 0.92667 0.96132 0.92282 0.86053 0.84774 0.78648 0.78015 0.86634 0.86269 0.87599 0.92566 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 10.24 71.98 0.74 -2.46 16 2 C 0.09 2.43 5.93 86.38 0.51 2.94 16 3 N -0.59 -22.75 2.46 -826.17 -2.03 -24.77 16 4 C 0.23 10.63 4.23 85.63 0.36 10.99 16 5 C -0.54 -30.96 9.94 25.60 0.25 -30.70 16 6 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 7 C 0.01 0.67 5.47 84.65 0.46 1.13 16 8 N -0.95 -59.27 13.96 21.45 0.30 -58.97 16 9 Si 0.95 43.59 27.47 68.60 1.88 45.47 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 12 H -0.24 -9.57 6.54 99.48 0.65 -8.92 16 13 C 0.50 19.71 7.75 87.66 0.68 20.39 16 14 O -0.57 -28.75 16.08 15.77 0.25 -28.50 16 15 C 0.06 1.64 4.51 71.24 0.32 1.96 16 16 O -0.33 -10.11 9.57 -49.86 -0.48 -10.58 16 17 C 0.55 13.28 7.94 70.34 0.56 13.83 16 18 O -0.49 -11.65 16.17 19.92 0.32 -11.32 16 19 C 0.02 0.41 6.84 42.55 0.29 0.70 16 20 C -0.02 -0.25 9.67 22.65 0.22 -0.03 16 21 C -0.18 -2.56 10.11 22.57 0.23 -2.34 16 22 C 0.47 9.96 7.47 85.01 0.63 10.59 16 23 O -0.55 -14.34 16.62 -5.21 -0.09 -14.43 16 24 N -0.33 -7.11 3.22 -472.49 -1.52 -8.63 16 25 C 0.09 1.68 6.27 86.38 0.54 2.22 16 26 C -0.16 -2.76 10.23 71.98 0.74 -2.03 16 27 N -0.16 -3.85 10.68 -48.24 -0.52 -4.37 16 28 H 0.06 1.10 7.22 -2.39 -0.02 1.09 16 29 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.08 2.30 8.07 -2.39 -0.02 2.28 16 32 H 0.10 2.01 6.44 -2.39 -0.02 2.00 16 33 H 0.06 2.35 7.13 -2.39 -0.02 2.34 16 34 H 0.02 1.04 6.85 -2.39 -0.02 1.03 16 35 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 36 H 0.12 2.87 7.40 -2.39 -0.02 2.85 16 37 H 0.13 2.76 7.18 -2.38 -0.02 2.74 16 38 H 0.20 1.54 7.72 -2.91 -0.02 1.51 16 39 H 0.20 1.59 8.06 -2.91 -0.02 1.56 16 40 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.12 1.88 7.36 -2.39 -0.02 1.86 16 42 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -83.50 382.21 5.64 -77.86 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.97 Total: 11.02 kcal Atomic # 6 Polarization: 20.68 SS G_CDS: 6.54 Total: 27.22 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -3.77 Total: -96.74 kcal Atomic # 8 Polarization: -64.85 SS G_CDS: 0.01 Total: -64.84 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.47 kcal Total: -83.50 5.64 -77.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732374177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.813 kcal (2) G-P(sol) polarization free energy of solvation -83.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds