Wall clock time and date at job start Tue Mar 31 2020 21:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47120 * 2 1 4 4 C 1.34118 * 125.69457 * 125.29248 * 3 2 1 5 5 C 1.38636 * 107.33942 * 180.16115 * 4 3 2 6 6 C 1.46923 * 126.49404 * 179.83633 * 5 4 3 7 7 O 1.21419 * 119.99774 * 359.71615 * 6 5 4 8 8 C 1.49275 * 119.99661 * 179.71270 * 6 5 4 9 9 O 1.21269 * 120.00382 * 0.02562 * 8 6 5 10 10 O 1.34564 * 119.99850 * 179.97438 * 8 6 5 11 11 C 1.45194 * 116.99980 * 180.02562 * 10 8 6 12 12 H 1.09002 * 109.47239 * 330.00003 * 11 10 8 13 13 C 1.52997 * 109.47339 * 90.00246 * 11 10 8 14 14 C 1.50708 * 109.47032 * 210.00347 * 11 10 8 15 15 O 1.21280 * 119.99888 * 354.99873 * 14 11 10 16 16 N 1.34777 * 119.99928 * 174.99982 * 14 11 10 17 17 C 1.46496 * 119.99889 * 359.97438 * 16 14 11 18 18 C 1.46500 * 119.99779 * 179.97438 * 16 14 11 19 19 C 1.50694 * 109.46954 * 89.99836 * 18 16 14 20 20 H 1.08003 * 120.00102 * 0.02562 * 19 18 16 21 21 C 1.37878 * 119.99994 * 179.97438 * 19 18 16 22 22 N 1.31509 * 120.00205 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00154 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46987 * 90.00313 * 23 21 19 25 25 H 1.48498 * 109.47209 * 210.00317 * 23 21 19 26 26 H 1.48500 * 109.47126 * 330.00657 * 23 21 19 27 27 C 1.41571 * 107.01048 * 359.57495 * 5 4 3 28 28 N 1.30350 * 107.99430 * 0.26297 * 27 5 4 29 29 H 1.09000 * 109.47076 * 59.99711 * 1 2 3 30 30 H 1.08998 * 109.46991 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47049 * 299.99637 * 1 2 3 32 32 H 1.09008 * 109.47275 * 240.00863 * 2 1 3 33 33 H 1.08992 * 109.47649 * 120.00427 * 2 1 3 34 34 H 1.08007 * 126.33198 * 0.03191 * 4 3 2 35 35 H 1.09002 * 109.47153 * 59.99705 * 13 11 10 36 36 H 1.09001 * 109.46832 * 299.99896 * 13 11 10 37 37 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 38 38 H 1.09003 * 109.47373 * 90.00178 * 17 16 14 39 39 H 1.09005 * 109.46584 * 209.99714 * 17 16 14 40 40 H 1.08999 * 109.47384 * 329.99408 * 17 16 14 41 41 H 1.08993 * 109.47001 * 209.99914 * 18 16 14 42 42 H 1.09002 * 109.47216 * 330.00108 * 18 16 14 43 43 H 0.97004 * 120.00789 * 179.97438 * 22 21 19 44 44 H 1.08003 * 126.00155 * 180.23973 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8725 1.9093 0.8890 5 6 3.0704 3.2349 0.5349 6 6 3.9280 4.2059 1.2280 7 8 4.5456 3.8718 2.2186 8 6 4.0399 5.6030 0.7143 9 8 3.4228 5.9367 -0.2748 10 8 4.8249 6.4924 1.3494 11 6 4.8854 7.8327 0.7943 12 1 4.7337 7.7865 -0.2841 13 6 3.7922 8.6964 1.4266 14 6 6.2348 8.4370 1.0863 15 8 7.0305 7.8380 1.7784 16 7 6.5572 9.6430 0.5783 17 6 5.5963 10.3662 -0.2582 18 6 7.8688 10.2306 0.8626 19 6 8.8513 9.8023 -0.1967 20 1 8.5308 9.1573 -1.0014 21 6 10.1593 10.2348 -0.1390 22 7 10.5495 11.0206 0.8406 23 14 11.3771 9.7045 -1.4524 24 1 11.3625 10.6864 -2.5664 25 1 12.7402 9.6406 -0.8667 26 1 10.9967 8.3649 -1.9683 27 6 2.2944 3.4741 -0.6248 28 7 1.6763 2.3680 -0.9309 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8898 34 1 3.3214 1.3970 1.7273 35 1 3.9439 8.7426 2.5050 36 1 2.8162 8.2593 1.2153 37 1 3.8379 9.7028 1.0101 38 1 4.9724 11.0011 0.3710 39 1 6.1337 10.9837 -0.9779 40 1 4.9678 9.6519 -0.7901 41 1 7.7872 11.3175 0.8644 42 1 8.2154 9.8906 1.8385 43 1 11.4697 11.3247 0.8814 44 1 2.2263 4.4089 -1.1614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758862694.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:50 Heat of formation + Delta-G solvation = -58.725360 kcal Electronic energy + Delta-G solvation = -28592.612870 eV Core-core repulsion = 24320.468040 eV Total energy + Delta-G solvation = -4272.144830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.85479 -40.79942 -39.23886 -38.55359 -36.60426 -35.00135 -34.91269 -32.88283 -31.59308 -31.04193 -30.38554 -27.73264 -26.69289 -26.10816 -24.58763 -24.07987 -22.90687 -21.78395 -21.11782 -20.06473 -18.89833 -18.16976 -17.65494 -16.77918 -16.53403 -16.46830 -16.10565 -15.90796 -15.67639 -15.21742 -14.88321 -14.65402 -14.50804 -14.20125 -14.02532 -13.51583 -13.43215 -13.28176 -13.02033 -12.89043 -12.68174 -12.41530 -12.21719 -12.10025 -12.07363 -11.84151 -11.67295 -11.44926 -11.19409 -11.13348 -10.91426 -10.76977 -10.57177 -10.16207 -10.03006 -10.00444 -9.64349 -9.17243 -8.90668 -8.43897 -7.72360 -6.04828 -4.09696 0.39148 1.41515 1.77974 2.09040 2.14781 3.05994 3.26311 3.31098 3.37961 3.43156 3.66867 3.92153 4.23377 4.29102 4.33641 4.45044 4.55397 4.62095 4.62835 4.80265 4.93965 4.94698 5.04313 5.05217 5.20155 5.28975 5.29787 5.46690 5.53799 5.62446 5.62739 5.84312 5.97131 6.07325 6.21367 6.25496 6.31035 6.75106 6.98695 7.15235 7.40013 7.45611 7.53375 7.91071 8.20945 8.29038 8.85382 9.00055 9.55278 11.03274 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.018572 B = 0.002248 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.302018 B =12453.449722 C =13042.115905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.123 3.877 3 N -0.356 5.356 4 C 0.143 3.857 5 C -0.317 4.317 6 C 0.450 3.550 7 O -0.405 6.405 8 C 0.439 3.561 9 O -0.481 6.481 10 O -0.300 6.300 11 C 0.065 3.935 12 H 0.110 0.890 13 C -0.170 4.170 14 C 0.507 3.493 15 O -0.515 6.515 16 N -0.595 5.595 17 C 0.076 3.924 18 C 0.247 3.753 19 C -0.529 4.529 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.894 5.894 23 Si 0.899 3.101 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.113 3.887 28 N -0.300 5.300 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.193 0.807 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.051 0.949 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.036 0.964 42 H 0.046 0.954 43 H 0.264 0.736 44 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.993 -17.666 -1.595 29.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.003 3.997 3 N -0.134 5.134 4 C -0.011 4.011 5 C -0.330 4.330 6 C 0.322 3.678 7 O -0.276 6.276 8 C 0.279 3.721 9 O -0.369 6.369 10 O -0.214 6.214 11 C 0.007 3.993 12 H 0.127 0.873 13 C -0.228 4.228 14 C 0.291 3.709 15 O -0.390 6.390 16 N -0.329 5.329 17 C -0.068 4.068 18 C 0.128 3.872 19 C -0.567 4.567 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.532 5.532 23 Si 0.727 3.273 24 H -0.206 1.206 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.075 4.075 28 N -0.119 5.119 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.210 0.790 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -23.087 -18.648 -1.719 29.727 hybrid contribution 1.269 0.350 -0.402 1.376 sum -21.819 -18.298 -2.120 28.554 Atomic orbital electron populations 1.22061 0.93138 1.03279 1.03938 1.21914 0.96670 0.76555 1.04578 1.48776 1.33330 1.10988 1.20281 1.23241 0.90645 0.93148 0.94050 1.20198 1.13026 0.94783 1.04944 1.20369 0.79638 0.84360 0.83428 1.90668 1.36563 1.78674 1.21672 1.24199 0.77242 0.88520 0.82143 1.90676 1.42167 1.79452 1.24559 1.86782 1.60513 1.21206 1.52914 1.22807 0.96645 0.79431 1.00443 0.87286 1.22293 0.97115 1.00549 1.02806 1.19716 0.86961 0.82396 0.81782 1.90733 1.50630 1.59956 1.37681 1.48066 1.18150 1.17699 1.49011 1.21849 0.92891 0.97016 0.95031 1.19359 0.76471 0.93291 0.98080 1.21422 0.94581 1.30544 1.10197 0.92404 1.24934 0.98110 0.94998 0.96047 1.69925 1.17795 1.34228 1.31301 0.86481 0.80408 0.79040 0.81414 1.20616 1.21045 1.19880 1.24746 0.91487 0.97542 0.93736 1.77225 1.24336 0.97177 1.13132 0.90771 0.90295 0.91856 0.88943 0.88017 0.78992 0.90777 0.91163 0.89053 0.93101 0.90265 0.92334 0.94558 0.93592 0.92663 0.77436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.61 10.09 37.16 0.37 -0.24 16 2 C 0.12 0.47 7.20 -4.04 -0.03 0.44 16 3 N -0.36 -2.79 3.64 -60.68 -0.22 -3.01 16 4 C 0.14 1.17 11.27 -16.41 -0.18 0.98 16 5 C -0.32 -3.47 6.12 -104.96 -0.64 -4.12 16 6 C 0.45 6.07 7.20 -31.48 -0.23 5.84 16 7 O -0.40 -6.30 17.52 -7.85 -0.14 -6.44 16 8 C 0.44 6.55 7.98 35.32 0.28 6.83 16 9 O -0.48 -6.80 13.50 -19.09 -0.26 -7.05 16 10 O -0.30 -5.35 9.28 -49.16 -0.46 -5.81 16 11 C 0.06 1.08 2.17 -27.88 -0.06 1.02 16 12 H 0.11 1.66 6.15 -51.93 -0.32 1.34 16 13 C -0.17 -2.18 9.28 37.16 0.34 -1.83 16 14 C 0.51 11.04 7.10 -10.98 -0.08 10.96 16 15 O -0.51 -13.77 16.09 -14.05 -0.23 -14.00 16 16 N -0.60 -12.63 2.86 -182.96 -0.52 -13.16 16 17 C 0.08 1.16 8.92 59.84 0.53 1.69 16 18 C 0.25 6.45 5.16 -5.20 -0.03 6.42 16 19 C -0.53 -15.07 9.39 -34.44 -0.32 -15.40 16 20 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 22 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 23 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 27 C 0.11 1.21 11.13 -16.91 -0.19 1.03 16 28 N -0.30 -3.12 12.31 30.91 0.38 -2.74 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.29 8.14 -51.92 -0.42 -0.13 16 33 H 0.10 0.12 8.06 -51.93 -0.42 -0.30 16 34 H 0.19 0.97 8.06 -52.48 -0.42 0.55 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.01 5.12 -51.93 -0.27 0.75 16 38 H 0.05 0.64 7.02 -51.93 -0.36 0.28 16 39 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 40 H 0.06 0.74 6.08 -51.93 -0.32 0.43 16 41 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 42 H 0.05 1.36 7.42 -51.93 -0.39 0.97 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.21 2.12 6.26 -52.48 -0.33 1.80 16 LS Contribution 383.08 15.07 5.77 5.77 Total: -1.00 -37.27 383.08 -6.01 -43.29 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -5.74 Total: -3.33 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: -0.32 Total: 15.30 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.37 Total: -44.78 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -1.08 Total: -33.30 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.27 -6.01 -43.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758862694.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.438 kcal (2) G-P(sol) polarization free energy of solvation -37.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds