Wall clock time and date at job start Tue Mar 31 2020 21:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47120 * 2 1 4 4 C 1.34118 * 125.69457 * 125.29248 * 3 2 1 5 5 C 1.38636 * 107.33942 * 180.16115 * 4 3 2 6 6 C 1.46923 * 126.49404 * 179.83633 * 5 4 3 7 7 O 1.21419 * 119.99774 * 359.71615 * 6 5 4 8 8 C 1.49275 * 119.99661 * 179.71270 * 6 5 4 9 9 O 1.21269 * 120.00382 * 0.02562 * 8 6 5 10 10 O 1.34564 * 119.99850 * 179.97438 * 8 6 5 11 11 C 1.45194 * 116.99980 * 180.02562 * 10 8 6 12 12 H 1.09002 * 109.47239 * 330.00003 * 11 10 8 13 13 C 1.52997 * 109.47339 * 90.00246 * 11 10 8 14 14 C 1.50708 * 109.47032 * 210.00347 * 11 10 8 15 15 O 1.21280 * 119.99888 * 354.99873 * 14 11 10 16 16 N 1.34777 * 119.99928 * 174.99982 * 14 11 10 17 17 C 1.46496 * 119.99889 * 359.97438 * 16 14 11 18 18 C 1.46500 * 119.99779 * 179.97438 * 16 14 11 19 19 C 1.50694 * 109.46954 * 89.99836 * 18 16 14 20 20 H 1.08003 * 120.00102 * 0.02562 * 19 18 16 21 21 C 1.37878 * 119.99994 * 179.97438 * 19 18 16 22 22 N 1.31509 * 120.00205 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00154 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46987 * 90.00313 * 23 21 19 25 25 H 1.48498 * 109.47209 * 210.00317 * 23 21 19 26 26 H 1.48500 * 109.47126 * 330.00657 * 23 21 19 27 27 C 1.41571 * 107.01048 * 359.57495 * 5 4 3 28 28 N 1.30350 * 107.99430 * 0.26297 * 27 5 4 29 29 H 1.09000 * 109.47076 * 59.99711 * 1 2 3 30 30 H 1.08998 * 109.46991 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47049 * 299.99637 * 1 2 3 32 32 H 1.09008 * 109.47275 * 240.00863 * 2 1 3 33 33 H 1.08992 * 109.47649 * 120.00427 * 2 1 3 34 34 H 1.08007 * 126.33198 * 0.03191 * 4 3 2 35 35 H 1.09002 * 109.47153 * 59.99705 * 13 11 10 36 36 H 1.09001 * 109.46832 * 299.99896 * 13 11 10 37 37 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 38 38 H 1.09003 * 109.47373 * 90.00178 * 17 16 14 39 39 H 1.09005 * 109.46584 * 209.99714 * 17 16 14 40 40 H 1.08999 * 109.47384 * 329.99408 * 17 16 14 41 41 H 1.08993 * 109.47001 * 209.99914 * 18 16 14 42 42 H 1.09002 * 109.47216 * 330.00108 * 18 16 14 43 43 H 0.97004 * 120.00789 * 179.97438 * 22 21 19 44 44 H 1.08003 * 126.00155 * 180.23973 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8725 1.9093 0.8890 5 6 3.0704 3.2349 0.5349 6 6 3.9280 4.2059 1.2280 7 8 4.5456 3.8718 2.2186 8 6 4.0399 5.6030 0.7143 9 8 3.4228 5.9367 -0.2748 10 8 4.8249 6.4924 1.3494 11 6 4.8854 7.8327 0.7943 12 1 4.7337 7.7865 -0.2841 13 6 3.7922 8.6964 1.4266 14 6 6.2348 8.4370 1.0863 15 8 7.0305 7.8380 1.7784 16 7 6.5572 9.6430 0.5783 17 6 5.5963 10.3662 -0.2582 18 6 7.8688 10.2306 0.8626 19 6 8.8513 9.8023 -0.1967 20 1 8.5308 9.1573 -1.0014 21 6 10.1593 10.2348 -0.1390 22 7 10.5495 11.0206 0.8406 23 14 11.3771 9.7045 -1.4524 24 1 11.3625 10.6864 -2.5664 25 1 12.7402 9.6406 -0.8667 26 1 10.9967 8.3649 -1.9683 27 6 2.2944 3.4741 -0.6248 28 7 1.6763 2.3680 -0.9309 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8898 34 1 3.3214 1.3970 1.7273 35 1 3.9439 8.7426 2.5050 36 1 2.8162 8.2593 1.2153 37 1 3.8379 9.7028 1.0101 38 1 4.9724 11.0011 0.3710 39 1 6.1337 10.9837 -0.9779 40 1 4.9678 9.6519 -0.7901 41 1 7.7872 11.3175 0.8644 42 1 8.2154 9.8906 1.8385 43 1 11.4697 11.3247 0.8814 44 1 2.2263 4.4089 -1.1614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758862694.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:47 Heat of formation + Delta-G solvation = -83.273595 kcal Electronic energy + Delta-G solvation = -28593.677361 eV Core-core repulsion = 24320.468040 eV Total energy + Delta-G solvation = -4273.209321 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.65664 -41.96576 -40.70716 -39.76989 -37.87488 -36.71868 -35.49105 -34.90795 -33.04899 -31.74760 -31.03733 -29.62988 -27.78705 -27.47287 -25.96577 -24.90517 -24.26986 -23.01088 -21.76153 -21.05547 -20.46307 -19.22633 -18.69322 -18.67099 -17.94455 -17.62292 -17.46201 -17.05244 -16.62881 -16.49982 -16.32803 -15.92706 -15.56193 -15.26608 -14.98281 -14.74672 -14.63892 -14.34427 -14.15165 -14.02550 -13.69158 -13.52954 -13.44041 -13.34309 -13.06983 -12.99991 -12.91892 -12.81858 -12.62609 -12.51862 -12.40447 -12.22688 -12.01332 -11.84637 -11.72562 -11.07556 -10.70423 -10.64970 -10.63280 -9.92806 -9.52265 -8.24048 -6.38480 -0.60409 0.64743 0.84467 1.16507 1.35614 1.37487 1.39164 1.48993 1.60693 2.09345 2.18997 2.39372 3.03596 3.05877 3.38166 3.43490 3.64184 3.69586 3.81423 3.84935 4.00362 4.06826 4.32589 4.34312 4.35810 4.46116 4.51791 4.61888 4.69018 4.80288 4.85403 4.89265 4.93699 5.05030 5.11217 5.20627 5.23101 5.37440 5.50808 5.68560 5.77489 5.80686 6.03099 6.32529 6.45023 6.59300 6.70110 7.19943 7.35392 8.83216 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.018572 B = 0.002248 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.302018 B =12453.449722 C =13042.115905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.112 3.888 3 N -0.348 5.348 4 C 0.163 3.837 5 C -0.341 4.341 6 C 0.457 3.543 7 O -0.437 6.437 8 C 0.436 3.564 9 O -0.472 6.472 10 O -0.329 6.329 11 C 0.074 3.926 12 H 0.128 0.872 13 C -0.163 4.163 14 C 0.497 3.503 15 O -0.580 6.580 16 N -0.598 5.598 17 C 0.067 3.933 18 C 0.259 3.741 19 C -0.546 4.546 20 H 0.052 0.948 21 C 0.008 3.992 22 N -0.925 5.925 23 Si 0.967 3.033 24 H -0.260 1.260 25 H -0.280 1.280 26 H -0.276 1.276 27 C 0.110 3.890 28 N -0.319 5.319 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.055 0.945 32 H 0.103 0.897 33 H 0.137 0.863 34 H 0.227 0.773 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.035 0.965 42 H 0.000 1.000 43 H 0.268 0.732 44 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.851 -19.170 -3.079 31.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.006 4.006 3 N -0.125 5.125 4 C 0.008 3.992 5 C -0.354 4.354 6 C 0.332 3.668 7 O -0.310 6.310 8 C 0.276 3.724 9 O -0.359 6.359 10 O -0.244 6.244 11 C 0.016 3.984 12 H 0.145 0.855 13 C -0.220 4.220 14 C 0.284 3.716 15 O -0.460 6.460 16 N -0.330 5.330 17 C -0.074 4.074 18 C 0.138 3.862 19 C -0.585 4.585 20 H 0.070 0.930 21 C -0.191 4.191 22 N -0.565 5.565 23 Si 0.792 3.208 24 H -0.185 1.185 25 H -0.206 1.206 26 H -0.201 1.201 27 C -0.079 4.079 28 N -0.139 5.139 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.074 0.926 32 H 0.121 0.879 33 H 0.155 0.845 34 H 0.243 0.757 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.131 0.869 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.053 0.947 42 H 0.018 0.982 43 H 0.077 0.923 44 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -25.028 -20.133 -3.266 32.287 hybrid contribution 1.746 0.726 0.040 1.891 sum -23.283 -19.407 -3.226 30.482 Atomic orbital electron populations 1.22036 0.93069 1.04426 1.02508 1.22393 0.96757 0.74586 1.06889 1.49169 1.32383 1.11809 1.19134 1.23735 0.89290 0.92134 0.94062 1.20125 1.13987 0.95607 1.05701 1.20496 0.79419 0.83831 0.83033 1.90655 1.38379 1.78835 1.23161 1.24611 0.76874 0.88744 0.82180 1.90661 1.41766 1.79396 1.24118 1.86782 1.61746 1.21960 1.53956 1.22768 0.94160 0.79775 1.01689 0.85495 1.22326 0.96563 1.00980 1.02089 1.20670 0.88476 0.81978 0.80490 1.90689 1.53076 1.61689 1.40559 1.48045 1.17461 1.18075 1.49413 1.22230 0.92274 0.97858 0.95075 1.18855 0.78901 0.93049 0.95351 1.21687 0.95665 1.30603 1.10518 0.92954 1.25845 1.00037 0.94908 0.98311 1.70037 1.18444 1.35078 1.32926 0.85419 0.77723 0.78717 0.78967 1.18526 1.20573 1.20102 1.24742 0.91550 0.97825 0.93742 1.77184 1.24748 0.97644 1.14287 0.92855 0.87879 0.92562 0.87917 0.84461 0.75700 0.91646 0.88686 0.86893 0.89625 0.90617 0.89093 0.94679 0.98222 0.92316 0.77624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 10.09 71.98 0.73 -0.10 16 2 C 0.11 0.51 7.20 86.38 0.62 1.13 16 3 N -0.35 -4.64 3.64 -345.88 -1.26 -5.90 16 4 C 0.16 2.29 11.27 84.44 0.95 3.24 16 5 C -0.34 -7.15 6.12 -20.09 -0.12 -7.27 16 6 C 0.46 12.32 7.20 27.52 0.20 12.51 16 7 O -0.44 -13.79 17.52 9.25 0.16 -13.63 16 8 C 0.44 12.93 7.98 70.79 0.56 13.50 16 9 O -0.47 -12.85 13.50 20.58 0.28 -12.57 16 10 O -0.33 -11.89 9.28 -46.08 -0.43 -12.32 16 11 C 0.07 2.41 2.17 29.85 0.06 2.47 16 12 H 0.13 3.64 6.15 -2.39 -0.01 3.62 16 13 C -0.16 -3.82 9.28 71.98 0.67 -3.15 16 14 C 0.50 22.16 7.10 87.66 0.62 22.78 16 15 O -0.58 -32.81 16.09 15.72 0.25 -32.56 16 16 N -0.60 -25.63 2.86 -851.14 -2.43 -28.06 16 17 C 0.07 1.91 8.92 127.77 1.14 3.05 16 18 C 0.26 14.09 5.16 85.63 0.44 14.54 16 19 C -0.55 -31.92 9.39 25.60 0.24 -31.68 16 20 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 21 C 0.01 0.48 5.46 84.66 0.46 0.94 16 22 N -0.93 -56.27 13.29 21.45 0.28 -55.99 16 23 Si 0.97 45.57 29.54 68.60 2.03 47.60 16 24 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 25 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 26 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 27 C 0.11 2.26 11.13 85.73 0.95 3.21 16 28 N -0.32 -6.24 12.31 -56.13 -0.69 -6.93 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.10 0.33 8.14 -2.38 -0.02 0.31 16 33 H 0.14 -0.30 8.06 -2.39 -0.02 -0.32 16 34 H 0.23 1.52 8.06 -2.91 -0.02 1.49 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.11 2.12 5.12 -2.38 -0.01 2.11 16 38 H 0.09 1.88 7.02 -2.39 -0.02 1.87 16 39 H 0.08 2.24 8.07 -2.38 -0.02 2.23 16 40 H 0.09 2.02 6.08 -2.39 -0.01 2.00 16 41 H 0.04 1.89 8.07 -2.39 -0.02 1.87 16 42 H 0.00 -0.02 7.42 -2.39 -0.02 -0.04 16 43 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.21 4.11 6.26 -2.91 -0.02 4.09 16 Total: -1.00 -86.10 383.08 6.76 -79.34 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 1.04 Total: 5.82 kcal Atomic # 6 Polarization: 27.66 SS G_CDS: 7.53 Total: 35.19 kcal Atomic # 7 Polarization: -92.78 SS G_CDS: -4.10 Total: -96.88 kcal Atomic # 8 Polarization: -71.34 SS G_CDS: 0.26 Total: -71.07 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -86.10 6.76 -79.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758862694.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.932 kcal (2) G-P(sol) polarization free energy of solvation -86.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds