Wall clock time and date at job start Tue Mar 31 2020 21:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47884 * 2 1 4 4 O 1.45204 * 109.46931 * 239.99455 * 2 1 3 5 5 C 1.34734 * 116.99359 * 90.00389 * 4 2 1 6 6 O 1.21485 * 120.00523 * 0.02562 * 5 4 2 7 7 C 1.47594 * 119.99404 * 179.97438 * 5 4 2 8 8 C 1.41345 * 125.95479 * 180.02562 * 7 5 4 9 9 C 1.34840 * 107.70313 * 179.97438 * 8 7 5 10 10 N 1.36409 * 107.93830 * 0.09520 * 9 8 7 11 11 N 1.32157 * 125.96360 * 359.97438 * 7 5 4 12 12 C 1.46717 * 123.62268 * 179.80569 * 10 9 8 13 13 C 1.53528 * 107.96475 * 343.06995 * 12 10 9 14 14 C 1.53235 * 109.30294 * 47.26953 * 13 12 10 15 15 O 1.36030 * 128.62178 * 180.22034 * 9 8 7 16 16 C 1.50700 * 109.46952 * 120.00127 * 2 1 3 17 17 O 1.21284 * 120.00019 * 119.99526 * 16 2 1 18 18 N 1.34776 * 120.00100 * 299.99716 * 16 2 1 19 19 C 1.46506 * 119.99996 * 359.97438 * 18 16 2 20 20 C 1.46495 * 120.00472 * 179.97438 * 18 16 2 21 21 C 1.50697 * 109.47101 * 89.99802 * 20 18 16 22 22 H 1.08001 * 120.00314 * 0.02562 * 21 20 18 23 23 C 1.37882 * 120.00174 * 180.02562 * 21 20 18 24 24 N 1.31513 * 119.99798 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99913 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47506 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47417 * 120.00114 * 25 23 21 28 28 H 1.48508 * 109.46854 * 239.99653 * 25 23 21 29 29 H 1.09007 * 109.46660 * 59.99460 * 1 2 3 30 30 H 1.08991 * 109.47449 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46957 * 300.00163 * 1 2 3 32 32 H 1.08002 * 126.14566 * 359.68286 * 8 7 5 33 33 H 1.09010 * 109.76150 * 102.68213 * 12 10 9 34 34 H 1.08999 * 109.76616 * 223.39973 * 12 10 9 35 35 H 1.09000 * 109.50103 * 167.21537 * 13 12 10 36 36 H 1.08997 * 109.49784 * 287.32546 * 13 12 10 37 37 H 1.08994 * 109.50550 * 55.34256 * 14 13 12 38 38 H 1.09001 * 109.50021 * 175.46108 * 14 13 12 39 39 H 1.09003 * 109.47111 * 89.99698 * 19 18 16 40 40 H 1.08995 * 109.47380 * 209.99906 * 19 18 16 41 41 H 1.09000 * 109.46736 * 330.00542 * 19 18 16 42 42 H 1.09001 * 109.47855 * 210.00231 * 20 18 16 43 43 H 1.09009 * 109.47356 * 330.00366 * 20 18 16 44 44 H 0.97003 * 119.99629 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2179 0.0667 -2.2852 6 8 1.9979 1.2611 -2.2543 7 6 2.7097 -0.5612 -3.5271 8 6 2.9666 0.1035 -4.7477 9 6 3.4011 -0.8169 -5.6322 10 7 3.4203 -2.0274 -5.0037 11 7 2.9876 -1.8428 -3.6914 12 6 3.8361 -3.2746 -5.6551 13 6 3.8086 -3.0478 -7.1733 14 6 4.5135 -1.7272 -7.5010 15 8 3.7720 -0.6396 -6.9289 16 6 2.0323 -0.7104 1.2305 17 8 2.7295 -1.6966 1.1192 18 7 1.7068 -0.2500 2.4546 19 6 0.8650 0.9415 2.5890 20 6 2.1945 -0.9409 3.6508 21 6 3.5223 -0.3580 4.0612 22 1 3.9589 0.4468 3.4885 23 6 4.1797 -0.8523 5.1678 24 7 3.6478 -1.8321 5.8654 25 14 5.8251 -0.1293 5.6768 26 1 6.2027 0.9542 4.7342 27 1 5.7190 0.4239 7.0508 28 1 6.8622 -1.1919 5.6499 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.8338 1.1581 -4.9391 33 1 4.8463 -3.5361 -5.3398 34 1 3.1477 -4.0767 -5.3890 35 1 4.3230 -3.8685 -7.6732 36 1 2.7748 -3.0031 -7.5158 37 1 5.5209 -1.7394 -7.0851 38 1 4.5671 -1.6020 -8.5825 39 1 -0.1831 0.6441 2.6221 40 1 1.1229 1.4667 3.5086 41 1 1.0289 1.6002 1.7362 42 1 1.4765 -0.8153 4.4612 43 1 2.3153 -2.0023 3.4335 44 1 4.1101 -2.1795 6.6442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763366774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:59 Heat of formation + Delta-G solvation = -82.605662 kcal Electronic energy + Delta-G solvation = -28940.837881 eV Core-core repulsion = 24667.657523 eV Total energy + Delta-G solvation = -4273.180357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.04940 -41.86603 -40.55483 -39.54425 -37.72079 -36.73584 -35.75119 -34.93478 -33.17890 -32.07231 -30.73042 -29.57941 -27.91048 -27.64585 -26.18267 -25.57917 -24.37371 -23.56713 -21.59563 -20.96050 -20.47833 -19.71056 -18.73093 -18.49159 -18.07424 -17.69045 -17.46132 -17.01958 -16.94749 -16.57420 -16.42169 -16.27458 -15.81922 -15.78936 -15.18877 -14.84368 -14.82609 -14.42130 -14.31245 -14.17015 -13.74912 -13.54886 -13.46565 -13.33245 -13.03246 -12.83463 -12.70415 -12.62108 -12.49654 -12.43113 -12.23176 -12.15855 -12.10016 -11.98650 -11.89623 -11.69568 -10.65981 -10.64308 -10.43704 -9.70609 -9.52106 -8.24487 -6.38758 -0.15512 0.79883 0.82735 1.18962 1.35414 1.38010 1.49652 1.60475 1.85037 1.98764 2.31613 2.42472 2.93834 3.05444 3.37326 3.43163 3.52995 3.70042 3.82936 3.86909 3.92443 4.02475 4.27559 4.32613 4.36943 4.47854 4.49052 4.54662 4.62485 4.63421 4.68789 4.87099 4.90549 4.93955 4.98851 5.08507 5.11882 5.13969 5.20850 5.51169 5.77689 6.02760 6.03286 6.08999 6.44516 6.60068 6.70033 7.19646 7.35198 8.83124 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.002432 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.999442 B =11512.412622 C =12345.498639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.077 3.923 3 H 0.122 0.878 4 O -0.331 6.331 5 C 0.554 3.446 6 O -0.500 6.500 7 C 0.043 3.957 8 C -0.237 4.237 9 C 0.275 3.725 10 N -0.381 5.381 11 N -0.242 5.242 12 C 0.106 3.894 13 C -0.162 4.162 14 C 0.035 3.965 15 O -0.291 6.291 16 C 0.500 3.500 17 O -0.579 6.579 18 N -0.598 5.598 19 C 0.066 3.934 20 C 0.260 3.740 21 C -0.545 4.545 22 H 0.051 0.949 23 C 0.009 3.991 24 N -0.926 5.926 25 Si 0.967 3.033 26 H -0.269 1.269 27 H -0.266 1.266 28 H -0.282 1.282 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.118 0.882 32 H 0.179 0.821 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.153 0.847 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.155 0.845 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.036 0.964 43 H 0.000 1.000 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.579 1.816 -29.641 29.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.019 3.981 3 H 0.140 0.860 4 O -0.246 6.246 5 C 0.396 3.604 6 O -0.386 6.386 7 C -0.121 4.121 8 C -0.266 4.266 9 C 0.108 3.892 10 N -0.181 5.181 11 N -0.075 5.075 12 C -0.012 4.012 13 C -0.200 4.200 14 C -0.039 4.039 15 O -0.198 6.198 16 C 0.287 3.713 17 O -0.459 6.459 18 N -0.330 5.330 19 C -0.075 4.075 20 C 0.139 3.861 21 C -0.584 4.584 22 H 0.070 0.930 23 C -0.191 4.191 24 N -0.566 5.566 25 Si 0.792 3.208 26 H -0.194 1.194 27 H -0.191 1.191 28 H -0.208 1.208 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.136 0.864 32 H 0.197 0.803 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.171 0.829 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.173 0.827 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.054 0.946 43 H 0.018 0.982 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.245 0.553 -29.179 29.364 hybrid contribution 0.980 0.544 0.507 1.230 sum -2.265 1.097 -28.672 28.783 Atomic orbital electron populations 1.22438 0.88815 1.04618 1.06507 1.22691 0.98199 0.96892 0.80320 0.86038 1.86746 1.76621 1.41454 1.19730 1.19782 0.73857 0.84309 0.82421 1.90815 1.48633 1.15071 1.84039 1.20624 1.06202 0.92181 0.93063 1.20241 1.15978 1.01339 0.89044 1.19345 0.98405 0.85846 0.85636 1.49866 1.51822 1.08720 1.07658 1.77847 1.17827 1.16499 0.95326 1.22634 1.03476 0.82315 0.92792 1.22692 1.04537 1.00560 0.92207 1.23644 0.94343 0.83900 1.02022 1.86690 1.70999 1.44314 1.17843 1.20602 0.80708 0.84841 0.85182 1.90678 1.39593 1.28779 1.86857 1.48029 1.50174 1.29603 1.05218 1.22281 0.94767 0.86210 1.04286 1.18859 0.94044 0.91743 0.81452 1.21719 1.05948 1.19181 1.11511 0.93024 1.25842 1.01782 0.95236 0.96205 1.70049 1.40599 1.27095 1.18830 0.85370 0.78715 0.78257 0.78476 1.19363 1.19060 1.20783 0.89154 0.91455 0.86419 0.80342 0.87356 0.86741 0.82919 0.89260 0.89977 0.82723 0.89443 0.90521 0.89177 0.94605 0.98226 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.27 9.19 71.98 0.66 -3.61 16 2 C 0.08 2.71 2.18 29.85 0.07 2.77 16 3 H 0.12 3.93 6.42 -2.39 -0.02 3.91 16 4 O -0.33 -12.88 9.42 -50.05 -0.47 -13.35 16 5 C 0.55 19.28 7.94 70.29 0.56 19.84 16 6 O -0.50 -17.18 16.16 19.88 0.32 -16.86 16 7 C 0.04 1.36 7.13 42.33 0.30 1.66 16 8 C -0.24 -6.15 10.58 22.25 0.24 -5.92 16 9 C 0.27 6.01 7.57 83.20 0.63 6.64 16 10 N -0.38 -8.50 4.08 -457.17 -1.87 -10.36 16 11 N -0.24 -7.66 12.67 -48.19 -0.61 -8.27 16 12 C 0.11 1.17 7.41 86.52 0.64 1.81 16 13 C -0.16 -0.54 6.16 30.85 0.19 -0.35 16 14 C 0.03 0.19 7.00 72.06 0.50 0.70 16 15 O -0.29 -4.60 10.65 -93.89 -1.00 -5.60 16 16 C 0.50 22.98 7.15 87.66 0.63 23.61 16 17 O -0.58 -33.29 16.08 15.76 0.25 -33.03 16 18 N -0.60 -26.29 2.86 -851.12 -2.43 -28.72 16 19 C 0.07 1.96 8.80 127.77 1.12 3.08 16 20 C 0.26 14.29 5.16 85.63 0.44 14.73 16 21 C -0.55 -32.16 9.39 25.60 0.24 -31.92 16 22 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 23 C 0.01 0.50 5.46 84.66 0.46 0.96 16 24 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 25 Si 0.97 45.89 29.54 68.60 2.03 47.92 16 26 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 27 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 28 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 29 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.12 2.41 4.53 -2.39 -0.01 2.40 16 32 H 0.18 4.07 8.06 -2.91 -0.02 4.04 16 33 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.15 -0.63 8.14 -2.39 -0.02 -0.65 16 36 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.16 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H 0.09 2.01 6.95 -2.39 -0.02 2.00 16 40 H 0.08 2.34 8.07 -2.39 -0.02 2.32 16 41 H 0.09 2.15 6.01 -2.39 -0.01 2.13 16 42 H 0.04 1.94 8.07 -2.39 -0.02 1.93 16 43 H 0.00 -0.03 7.42 -2.38 -0.02 -0.04 16 44 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -88.32 373.97 4.23 -84.10 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 1.04 Total: 6.49 kcal Atomic # 6 Polarization: 27.32 SS G_CDS: 6.68 Total: 34.00 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -4.62 Total: -103.66 kcal Atomic # 8 Polarization: -67.95 SS G_CDS: -0.90 Total: -68.84 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -88.32 4.23 -84.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763366774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.490 kcal (2) G-P(sol) polarization free energy of solvation -88.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds