Wall clock time and date at job start Tue Mar 31 2020 22:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42906 * 109.47003 * 2 1 4 4 C 1.35476 * 116.99948 * 180.02562 * 3 2 1 5 5 C 1.39662 * 119.97352 * 179.97438 * 4 3 2 6 6 N 1.31509 * 120.04409 * 180.02562 * 5 4 3 7 7 C 1.33250 * 119.98693 * 359.97438 * 6 5 4 8 8 C 1.47787 * 120.02893 * 179.97438 * 7 6 5 9 9 O 1.21460 * 119.99998 * 180.02562 * 8 7 6 10 10 O 1.34710 * 119.99644 * 0.02562 * 8 7 6 11 11 C 1.45206 * 116.99810 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47147 * 179.97438 * 11 10 8 13 13 O 1.21279 * 119.99926 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99773 * 179.97438 * 12 11 10 15 15 C 1.46493 * 120.00135 * 0.02562 * 14 12 11 16 16 C 1.52998 * 109.47539 * 89.99624 * 15 14 12 17 17 C 1.46500 * 119.99583 * 179.97438 * 14 12 11 18 18 C 1.50704 * 109.46716 * 90.00733 * 17 14 12 19 19 H 1.07998 * 120.00154 * 359.97438 * 18 17 14 20 20 C 1.37877 * 120.00084 * 180.02562 * 18 17 14 21 21 N 1.31519 * 119.99967 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00392 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46771 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47605 * 119.99462 * 22 20 18 25 25 H 1.48498 * 109.47011 * 239.99882 * 22 20 18 26 26 C 1.39443 * 119.94430 * 0.25841 * 7 6 5 27 27 N 1.32069 * 119.95407 * 359.47427 * 26 7 6 28 28 H 1.09004 * 109.47015 * 59.99800 * 1 2 3 29 29 H 1.08998 * 109.47074 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47062 * 300.00031 * 1 2 3 31 31 H 1.08994 * 109.47181 * 240.00251 * 2 1 3 32 32 H 1.08994 * 109.47147 * 119.99649 * 2 1 3 33 33 H 1.07998 * 119.97870 * 0.02562 * 5 4 3 34 34 H 1.09001 * 109.47157 * 299.99606 * 11 10 8 35 35 H 1.09004 * 109.47122 * 59.99740 * 11 10 8 36 36 H 1.09003 * 109.47161 * 210.00024 * 15 14 12 37 37 H 1.09002 * 109.47359 * 329.99662 * 15 14 12 38 38 H 1.09006 * 109.46809 * 60.00184 * 16 15 14 39 39 H 1.09005 * 109.47543 * 179.97438 * 16 15 14 40 40 H 1.09003 * 109.47221 * 300.00363 * 16 15 14 41 41 H 1.08997 * 109.47188 * 209.99811 * 17 14 12 42 42 H 1.09000 * 109.47702 * 330.00734 * 17 14 12 43 43 H 0.97000 * 119.99819 * 180.02562 * 21 20 18 44 44 H 1.07995 * 120.02089 * 179.72310 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3494 1.5249 -0.0005 5 6 3.8826 2.8157 -0.0011 6 7 5.1861 2.9896 -0.0021 7 6 5.9989 1.9337 -0.0021 8 6 7.4640 2.1281 -0.0039 9 8 8.2043 1.1652 -0.0043 10 8 7.9781 3.3732 -0.0049 11 6 9.4256 3.4886 -0.0060 12 6 9.8134 4.9449 -0.0078 13 8 8.9545 5.8012 -0.0076 14 7 11.1147 5.2957 -0.0085 15 6 12.1521 4.2614 -0.0082 16 6 12.5128 3.9002 -1.4505 17 6 11.4916 6.7114 -0.0108 18 6 11.6212 7.1989 1.4094 19 1 11.4405 6.5220 2.2313 20 6 11.9696 8.5093 1.6593 21 7 12.1892 9.3337 0.6584 22 14 12.1295 9.1138 3.4195 23 1 11.8321 7.9992 4.3546 24 1 13.5133 9.5998 3.6523 25 1 11.1697 10.2231 3.6510 26 6 5.4660 0.6451 -0.0065 27 7 4.1566 0.4731 -0.0001 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.2240 3.6716 -0.0007 34 1 9.8293 3.0059 0.8840 35 1 9.8280 3.0048 -0.8961 36 1 13.0380 4.6355 0.5051 37 1 11.7813 3.3750 0.5065 38 1 12.8837 4.7867 -1.9651 39 1 13.2851 3.1309 -1.4502 40 1 11.6269 3.5261 -1.9637 41 1 12.4451 6.8327 -0.5249 42 1 10.7250 7.2908 -0.5253 43 1 12.4346 10.2555 0.8343 44 1 6.1236 -0.2115 -0.0110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778536763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:27 Heat of formation + Delta-G solvation = -99.492050 kcal Electronic energy + Delta-G solvation = -28131.225972 eV Core-core repulsion = 23857.313366 eV Total energy + Delta-G solvation = -4273.912606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.89718 -40.44432 -39.16265 -38.75198 -36.48146 -35.28569 -34.70146 -32.83984 -32.76667 -31.08843 -30.16192 -29.14116 -26.70464 -25.84124 -25.18370 -23.28542 -23.07200 -22.69218 -21.63669 -19.19465 -18.88674 -18.70018 -17.81699 -17.08998 -16.99498 -16.70362 -16.38453 -16.09599 -15.48836 -15.38029 -15.10393 -14.98024 -14.42417 -14.35240 -13.99538 -13.46554 -13.42370 -13.19421 -13.12714 -12.86892 -12.54925 -12.39112 -12.12736 -12.05029 -11.90681 -11.76152 -11.62451 -11.33276 -11.23009 -11.06940 -10.93008 -10.86060 -10.61877 -10.52630 -10.13372 -9.77554 -9.62762 -9.29820 -8.96948 -8.43691 -7.73189 -6.04558 -4.09179 -0.07450 0.55182 2.10446 2.11342 2.35818 3.25189 3.29155 3.30747 3.38717 3.42974 3.44674 3.57314 3.86051 3.97179 4.43043 4.44565 4.45377 4.54385 4.72353 4.81639 4.86958 5.03700 5.05330 5.13262 5.20402 5.28184 5.30221 5.36694 5.44298 5.56535 5.59565 5.73962 5.99279 6.15441 6.20293 6.43639 6.45607 6.58887 7.00179 7.10220 7.41679 7.47944 7.56780 7.91828 8.21910 8.31428 8.86850 9.01600 9.55859 11.03617 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.016871 B = 0.002148 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.227195 B =13033.546329 C =14151.181170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.290 6.290 4 C 0.306 3.694 5 C 0.049 3.951 6 N -0.343 5.343 7 C -0.005 4.005 8 C 0.532 3.468 9 O -0.501 6.501 10 O -0.303 6.303 11 C 0.047 3.953 12 C 0.506 3.494 13 O -0.514 6.514 14 N -0.592 5.592 15 C 0.102 3.898 16 C -0.171 4.171 17 C 0.248 3.752 18 C -0.527 4.527 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.894 5.894 22 Si 0.899 3.101 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.282 1.282 26 C 0.166 3.834 27 N -0.503 5.503 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.189 0.811 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.036 0.964 42 H 0.045 0.955 43 H 0.263 0.737 44 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.469 -21.836 -3.371 27.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.015 4.015 3 O -0.194 6.194 4 C 0.122 3.878 5 C -0.120 4.120 6 N -0.060 5.060 7 C -0.142 4.142 8 C 0.375 3.625 9 O -0.390 6.390 10 O -0.216 6.216 11 C -0.030 4.030 12 C 0.291 3.709 13 O -0.389 6.389 14 N -0.326 5.326 15 C -0.023 4.023 16 C -0.229 4.229 17 C 0.129 3.871 18 C -0.566 4.566 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.726 3.274 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.208 1.208 26 C 0.008 3.992 27 N -0.233 5.233 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.206 0.794 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -16.812 -21.261 -3.408 27.319 hybrid contribution 0.383 0.032 0.970 1.043 sum -16.430 -21.229 -2.439 26.955 Atomic orbital electron populations 1.21839 0.92339 1.03280 1.03684 1.22826 0.95383 0.80244 1.03088 1.86274 1.15549 1.31688 1.85917 1.21431 0.85288 0.91792 0.89282 1.23191 0.91462 0.95261 1.02054 1.68606 1.02950 1.31932 1.02522 1.20841 0.92404 0.91291 1.09662 1.20312 0.87363 0.81855 0.73008 1.90861 1.59989 1.41691 1.46441 1.86738 1.24092 1.28476 1.82272 1.23090 0.77410 0.98123 1.04411 1.19657 0.83760 0.88600 0.78926 1.90740 1.48691 1.51189 1.48254 1.48199 1.03428 1.09584 1.71421 1.21507 0.93181 0.90997 0.96567 1.22239 1.01201 1.01899 0.97557 1.19334 0.96451 0.73655 0.97645 1.21474 1.46971 0.95879 0.92284 0.92316 1.24936 0.95223 0.96485 0.97473 1.69943 1.47265 1.05464 1.30624 0.86431 0.77523 0.78860 0.84540 1.19799 1.20986 1.20848 1.23512 0.90142 0.97021 0.88529 1.68315 1.04861 1.32361 1.17755 0.91354 0.89945 0.91354 0.91020 0.91015 0.79396 0.88395 0.88486 0.89421 0.91747 0.91793 0.91910 0.93121 0.94620 0.93673 0.92747 0.79288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 10.28 37.16 0.38 -0.22 16 2 C 0.06 0.36 6.04 37.16 0.22 0.58 16 3 O -0.29 -2.39 10.12 -18.12 -0.18 -2.57 16 4 C 0.31 2.93 7.51 -16.70 -0.13 2.81 16 5 C 0.05 0.50 11.18 -17.16 -0.19 0.31 16 6 N -0.34 -4.61 10.27 -9.50 -0.10 -4.71 16 7 C -0.01 -0.07 6.74 -82.90 -0.56 -0.63 16 8 C 0.53 7.85 7.94 34.64 0.28 8.12 16 9 O -0.50 -7.34 16.12 -19.23 -0.31 -7.65 16 10 O -0.30 -5.32 9.58 -47.20 -0.45 -5.77 16 11 C 0.05 0.77 4.51 36.01 0.16 0.93 16 12 C 0.51 10.85 7.75 -10.98 -0.09 10.76 16 13 O -0.51 -13.51 16.08 -14.10 -0.23 -13.74 16 14 N -0.59 -12.45 2.46 -175.06 -0.43 -12.88 16 15 C 0.10 1.59 5.93 -4.05 -0.02 1.57 16 16 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 17 C 0.25 6.43 5.16 -5.19 -0.03 6.40 16 18 C -0.53 -14.93 9.39 -34.44 -0.32 -15.25 16 19 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 22 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 26 C 0.17 1.68 10.76 -17.00 -0.18 1.49 16 27 N -0.50 -4.95 9.37 -12.74 -0.12 -5.07 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.42 8.11 -51.93 -0.42 0.00 16 32 H 0.07 0.42 8.11 -51.93 -0.42 0.00 16 33 H 0.19 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.10 1.42 7.40 -51.93 -0.38 1.03 16 35 H 0.10 1.35 7.18 -51.93 -0.37 0.97 16 36 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 37 H 0.06 0.84 6.44 -51.93 -0.33 0.50 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.64 7.22 -51.93 -0.38 0.26 16 41 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 42 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.19 1.48 7.63 -52.49 -0.40 1.08 16 LS Contribution 387.57 15.07 5.84 5.84 Total: -1.00 -35.61 387.57 -6.47 -42.08 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -6.01 Total: -3.33 kcal Atomic # 6 Polarization: 16.85 SS G_CDS: -0.19 Total: 16.66 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.09 Total: -48.46 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -1.17 Total: -29.74 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.61 -6.47 -42.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778536763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.411 kcal (2) G-P(sol) polarization free energy of solvation -35.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds