Wall clock time and date at job start Tue Mar 31 2020 22:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42906 * 109.47003 * 2 1 4 4 C 1.35476 * 116.99948 * 180.02562 * 3 2 1 5 5 C 1.39662 * 119.97352 * 179.97438 * 4 3 2 6 6 N 1.31509 * 120.04409 * 180.02562 * 5 4 3 7 7 C 1.33250 * 119.98693 * 359.97438 * 6 5 4 8 8 C 1.47787 * 120.02893 * 179.97438 * 7 6 5 9 9 O 1.21460 * 119.99998 * 180.02562 * 8 7 6 10 10 O 1.34710 * 119.99644 * 0.02562 * 8 7 6 11 11 C 1.45206 * 116.99810 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47147 * 179.97438 * 11 10 8 13 13 O 1.21279 * 119.99926 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99773 * 179.97438 * 12 11 10 15 15 C 1.46493 * 120.00135 * 0.02562 * 14 12 11 16 16 C 1.52998 * 109.47539 * 89.99624 * 15 14 12 17 17 C 1.46500 * 119.99583 * 179.97438 * 14 12 11 18 18 C 1.50704 * 109.46716 * 90.00733 * 17 14 12 19 19 H 1.07998 * 120.00154 * 359.97438 * 18 17 14 20 20 C 1.37877 * 120.00084 * 180.02562 * 18 17 14 21 21 N 1.31519 * 119.99967 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00392 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46771 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47605 * 119.99462 * 22 20 18 25 25 H 1.48498 * 109.47011 * 239.99882 * 22 20 18 26 26 C 1.39443 * 119.94430 * 0.25841 * 7 6 5 27 27 N 1.32069 * 119.95407 * 359.47427 * 26 7 6 28 28 H 1.09004 * 109.47015 * 59.99800 * 1 2 3 29 29 H 1.08998 * 109.47074 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47062 * 300.00031 * 1 2 3 31 31 H 1.08994 * 109.47181 * 240.00251 * 2 1 3 32 32 H 1.08994 * 109.47147 * 119.99649 * 2 1 3 33 33 H 1.07998 * 119.97870 * 0.02562 * 5 4 3 34 34 H 1.09001 * 109.47157 * 299.99606 * 11 10 8 35 35 H 1.09004 * 109.47122 * 59.99740 * 11 10 8 36 36 H 1.09003 * 109.47161 * 210.00024 * 15 14 12 37 37 H 1.09002 * 109.47359 * 329.99662 * 15 14 12 38 38 H 1.09006 * 109.46809 * 60.00184 * 16 15 14 39 39 H 1.09005 * 109.47543 * 179.97438 * 16 15 14 40 40 H 1.09003 * 109.47221 * 300.00363 * 16 15 14 41 41 H 1.08997 * 109.47188 * 209.99811 * 17 14 12 42 42 H 1.09000 * 109.47702 * 330.00734 * 17 14 12 43 43 H 0.97000 * 119.99819 * 180.02562 * 21 20 18 44 44 H 1.07995 * 120.02089 * 179.72310 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3494 1.5249 -0.0005 5 6 3.8826 2.8157 -0.0011 6 7 5.1861 2.9896 -0.0021 7 6 5.9989 1.9337 -0.0021 8 6 7.4640 2.1281 -0.0039 9 8 8.2043 1.1652 -0.0043 10 8 7.9781 3.3732 -0.0049 11 6 9.4256 3.4886 -0.0060 12 6 9.8134 4.9449 -0.0078 13 8 8.9545 5.8012 -0.0076 14 7 11.1147 5.2957 -0.0085 15 6 12.1521 4.2614 -0.0082 16 6 12.5128 3.9002 -1.4505 17 6 11.4916 6.7114 -0.0108 18 6 11.6212 7.1989 1.4094 19 1 11.4405 6.5220 2.2313 20 6 11.9696 8.5093 1.6593 21 7 12.1892 9.3337 0.6584 22 14 12.1295 9.1138 3.4195 23 1 11.8321 7.9992 4.3546 24 1 13.5133 9.5998 3.6523 25 1 11.1697 10.2231 3.6510 26 6 5.4660 0.6451 -0.0065 27 7 4.1566 0.4731 -0.0001 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.2240 3.6716 -0.0007 34 1 9.8293 3.0059 0.8840 35 1 9.8280 3.0048 -0.8961 36 1 13.0380 4.6355 0.5051 37 1 11.7813 3.3750 0.5065 38 1 12.8837 4.7867 -1.9651 39 1 13.2851 3.1309 -1.4502 40 1 11.6269 3.5261 -1.9637 41 1 12.4451 6.8327 -0.5249 42 1 10.7250 7.2908 -0.5253 43 1 12.4346 10.2555 0.8343 44 1 6.1236 -0.2115 -0.0110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778536763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:26 Heat of formation + Delta-G solvation = -124.759653 kcal Electronic energy + Delta-G solvation = -28132.321657 eV Core-core repulsion = 23857.313366 eV Total energy + Delta-G solvation = -4275.008292 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.73036 -41.61137 -40.54972 -39.68900 -37.71351 -36.96909 -35.52529 -34.93064 -33.37116 -31.87643 -31.65061 -30.58140 -28.47427 -26.68342 -26.11409 -24.85347 -24.15101 -23.78003 -22.73754 -20.32948 -19.92762 -19.73585 -18.89189 -18.59545 -18.19421 -17.96646 -17.62012 -17.55211 -17.09475 -16.33704 -16.19388 -16.09002 -15.74031 -15.52128 -14.98847 -14.74539 -14.64042 -14.48337 -14.00598 -13.79897 -13.68974 -13.56903 -13.50550 -13.27481 -13.08848 -13.05575 -12.69125 -12.54079 -12.50418 -12.45732 -12.22957 -12.16697 -12.05943 -11.84770 -11.79056 -11.68765 -10.74867 -10.64833 -10.56746 -10.07043 -9.52979 -8.22990 -6.37243 -0.93131 -0.24714 1.04676 1.09463 1.36502 1.39369 1.50723 1.59064 1.63840 2.25932 2.41263 2.41597 2.71268 2.86514 3.07061 3.11875 3.43253 3.57218 3.78279 3.91668 3.98068 4.04739 4.12364 4.17365 4.35783 4.40261 4.40313 4.56166 4.61443 4.87055 4.91982 4.93668 4.96712 5.02967 5.05323 5.21363 5.22121 5.38533 5.55413 5.76477 5.78683 5.81393 6.04838 6.22654 6.48521 6.63645 6.72496 7.22845 7.37733 8.84605 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.016871 B = 0.002148 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.227195 B =13033.546329 C =14151.181170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.291 6.291 4 C 0.316 3.684 5 C 0.049 3.951 6 N -0.381 5.381 7 C -0.030 4.030 8 C 0.535 3.465 9 O -0.502 6.502 10 O -0.332 6.332 11 C 0.059 3.941 12 C 0.498 3.502 13 O -0.577 6.577 14 N -0.595 5.595 15 C 0.093 3.907 16 C -0.163 4.163 17 C 0.263 3.737 18 C -0.544 4.544 19 H 0.055 0.945 20 C 0.007 3.993 21 N -0.927 5.927 22 Si 0.968 3.032 23 H -0.267 1.267 24 H -0.268 1.268 25 H -0.283 1.283 26 C 0.184 3.816 27 N -0.504 5.504 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.210 0.790 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.043 0.957 39 H 0.098 0.902 40 H 0.058 0.942 41 H 0.030 0.970 42 H -0.002 1.002 43 H 0.267 0.733 44 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.926 -24.564 -2.508 29.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.194 6.194 4 C 0.131 3.869 5 C -0.120 4.120 6 N -0.098 5.098 7 C -0.166 4.166 8 C 0.378 3.622 9 O -0.391 6.391 10 O -0.246 6.246 11 C -0.017 4.017 12 C 0.285 3.715 13 O -0.456 6.456 14 N -0.327 5.327 15 C -0.029 4.029 16 C -0.221 4.221 17 C 0.142 3.858 18 C -0.582 4.582 19 H 0.073 0.927 20 C -0.192 4.192 21 N -0.567 5.567 22 Si 0.792 3.208 23 H -0.192 1.192 24 H -0.193 1.193 25 H -0.209 1.209 26 C 0.025 3.975 27 N -0.234 5.234 28 H 0.086 0.914 29 H 0.120 0.880 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.227 0.773 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.062 0.938 39 H 0.117 0.883 40 H 0.077 0.923 41 H 0.048 0.952 42 H 0.017 0.983 43 H 0.076 0.924 44 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -17.236 -24.060 -2.554 29.707 hybrid contribution 0.396 0.813 0.656 1.118 sum -16.839 -23.247 -1.898 28.767 Atomic orbital electron populations 1.21864 0.90658 1.04539 1.03643 1.23096 0.96687 0.79071 1.03348 1.86297 1.14609 1.33300 1.85186 1.21497 0.85874 0.91605 0.87918 1.23509 0.90746 0.96424 1.01348 1.68508 1.04390 1.33064 1.03818 1.20768 0.91352 0.92254 1.12182 1.20566 0.88174 0.80866 0.72556 1.90839 1.60249 1.41234 1.46763 1.86727 1.24411 1.30469 1.83004 1.22969 0.77764 0.93975 1.07003 1.20545 0.83041 0.90590 0.77325 1.90700 1.50381 1.53493 1.51071 1.48196 1.04936 1.08803 1.70776 1.21884 0.91609 0.90497 0.98869 1.22183 1.02572 1.02082 0.95311 1.18788 0.94427 0.76475 0.96138 1.21746 1.47077 0.96378 0.93043 0.92714 1.25856 0.94706 0.96647 1.01962 1.70057 1.47826 1.05907 1.32891 0.85360 0.78092 0.78164 0.79139 1.19156 1.19302 1.20857 1.23776 0.90397 0.96511 0.86766 1.68418 1.04679 1.32236 1.18097 0.91360 0.88028 0.91417 0.90709 0.90778 0.77326 0.85832 0.85407 0.90011 0.88167 0.93827 0.88294 0.92339 0.95158 0.98345 0.92381 0.77045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 71.98 0.74 -0.12 16 2 C 0.05 0.53 6.04 71.98 0.43 0.96 16 3 O -0.29 -4.29 10.12 -87.75 -0.89 -5.18 16 4 C 0.32 5.61 7.51 84.92 0.64 6.25 16 5 C 0.05 0.97 11.18 85.09 0.95 1.92 16 6 N -0.38 -10.25 10.27 -183.96 -1.89 -12.14 16 7 C -0.03 -0.76 6.74 41.75 0.28 -0.48 16 8 C 0.54 15.33 7.94 70.35 0.56 15.89 16 9 O -0.50 -13.71 16.12 19.97 0.32 -13.39 16 10 O -0.33 -11.64 9.58 -49.81 -0.48 -12.12 16 11 C 0.06 1.88 4.51 71.24 0.32 2.20 16 12 C 0.50 21.77 7.75 87.66 0.68 22.45 16 13 O -0.58 -31.96 16.08 15.77 0.25 -31.70 16 14 N -0.59 -25.40 2.46 -826.17 -2.03 -27.43 16 15 C 0.09 2.78 5.93 86.38 0.51 3.29 16 16 C -0.16 -3.95 10.24 71.98 0.74 -3.22 16 17 C 0.26 14.27 5.16 85.63 0.44 14.71 16 18 C -0.54 -31.63 9.39 25.60 0.24 -31.39 16 19 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 20 C 0.01 0.43 5.46 84.65 0.46 0.89 16 21 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 22 Si 0.97 45.43 29.54 68.60 2.03 47.46 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 25 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 26 C 0.18 3.41 10.76 84.95 0.91 4.32 16 27 N -0.50 -9.04 9.37 -307.04 -2.88 -11.92 16 28 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.07 0.41 8.14 -2.39 -0.02 0.40 16 31 H 0.07 0.72 8.11 -2.39 -0.02 0.70 16 32 H 0.07 0.73 8.11 -2.39 -0.02 0.71 16 33 H 0.21 2.94 8.06 -2.91 -0.02 2.92 16 34 H 0.12 3.25 7.40 -2.39 -0.02 3.24 16 35 H 0.13 3.22 7.18 -2.38 -0.02 3.21 16 36 H 0.08 2.54 8.07 -2.39 -0.02 2.52 16 37 H 0.10 2.29 6.44 -2.39 -0.02 2.27 16 38 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.06 1.33 7.22 -2.39 -0.02 1.31 16 41 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 42 H 0.00 -0.10 7.42 -2.39 -0.02 -0.12 16 43 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 44 H 0.21 2.81 7.63 -2.91 -0.02 2.79 16 Total: -1.00 -81.03 387.57 3.66 -77.37 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 1.02 Total: 7.53 kcal Atomic # 6 Polarization: 29.76 SS G_CDS: 7.91 Total: 37.67 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -6.51 Total: -107.64 kcal Atomic # 8 Polarization: -61.60 SS G_CDS: -0.79 Total: -62.39 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -81.03 3.66 -77.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778536763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.387 kcal (2) G-P(sol) polarization free energy of solvation -81.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds