Wall clock time and date at job start Tue Mar 31 2020 22:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42899 * 109.47328 * 2 1 4 4 C 1.35469 * 117.00238 * 179.97438 * 3 2 1 5 5 C 1.39664 * 119.97236 * 180.02562 * 4 3 2 6 6 N 1.31512 * 120.04140 * 180.02562 * 5 4 3 7 7 C 1.33250 * 119.98409 * 359.97438 * 6 5 4 8 8 C 1.47789 * 120.02324 * 179.97438 * 7 6 5 9 9 O 1.21469 * 120.00054 * 180.02562 * 8 7 6 10 10 O 1.34715 * 120.00093 * 0.02562 * 8 7 6 11 11 C 1.45206 * 116.99993 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46660 * 329.99680 * 11 10 8 13 13 C 1.52997 * 109.47147 * 89.99916 * 11 10 8 14 14 C 1.50697 * 109.47064 * 210.00317 * 11 10 8 15 15 O 1.21285 * 120.00040 * 354.99791 * 14 11 10 16 16 N 1.34778 * 119.99902 * 174.99933 * 14 11 10 17 17 C 1.46493 * 120.00087 * 359.97438 * 16 14 11 18 18 C 1.46505 * 119.99823 * 179.97438 * 16 14 11 19 19 C 1.50697 * 109.46900 * 89.99912 * 18 16 14 20 20 H 1.07995 * 120.00161 * 0.02562 * 19 18 16 21 21 C 1.37880 * 120.00017 * 179.97438 * 19 18 16 22 22 N 1.31522 * 119.99535 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00201 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46851 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46994 * 119.99941 * 23 21 19 26 26 H 1.48495 * 109.47157 * 240.00302 * 23 21 19 27 27 C 1.39438 * 119.94872 * 0.25181 * 7 6 5 28 28 N 1.32064 * 119.95630 * 359.50828 * 27 7 6 29 29 H 1.08999 * 109.47011 * 299.99667 * 1 2 3 30 30 H 1.08999 * 109.47311 * 59.99974 * 1 2 3 31 31 H 1.09007 * 109.47260 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47037 * 239.99777 * 2 1 3 33 33 H 1.09007 * 109.47188 * 120.00309 * 2 1 3 34 34 H 1.07998 * 119.98484 * 0.02562 * 5 4 3 35 35 H 1.09002 * 109.47153 * 179.97438 * 13 11 10 36 36 H 1.09001 * 109.46832 * 60.00119 * 13 11 10 37 37 H 1.09004 * 109.47261 * 300.00100 * 13 11 10 38 38 H 1.09002 * 109.47115 * 89.99747 * 17 16 14 39 39 H 1.08998 * 109.47192 * 209.99907 * 17 16 14 40 40 H 1.08999 * 109.47064 * 329.99847 * 17 16 14 41 41 H 1.08997 * 109.46961 * 210.00478 * 18 16 14 42 42 H 1.09005 * 109.46984 * 329.99937 * 18 16 14 43 43 H 0.97003 * 119.99529 * 179.97438 * 22 21 19 44 44 H 1.08007 * 120.02298 * 179.72039 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3494 1.5248 0.0005 5 6 3.8826 2.8156 0.0011 6 7 5.1861 2.9895 0.0011 7 6 5.9988 1.9335 0.0011 8 6 7.4639 2.1279 0.0006 9 8 8.2043 1.1650 0.0001 10 8 7.9781 3.3731 0.0006 11 6 9.4256 3.4884 0.0006 12 1 9.8584 2.6302 0.5145 13 6 9.9340 3.5290 -1.4419 14 6 9.8285 4.7549 0.7111 15 8 8.9797 5.5328 1.0921 16 7 11.1323 5.0230 0.9231 17 6 12.1576 4.0831 0.4634 18 6 11.5240 6.2544 1.6133 19 6 11.5951 5.9980 3.0966 20 1 11.3714 5.0159 3.4862 21 6 11.9469 7.0169 3.9564 22 7 12.2199 8.2128 3.4818 23 14 12.0357 6.6989 5.7949 24 1 11.6859 5.2820 6.0696 25 1 13.4134 6.9707 6.2783 26 1 11.0793 7.5907 6.4983 27 6 5.4659 0.6450 -0.0042 28 7 4.1566 0.4729 0.0006 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.2240 3.6716 0.0015 35 1 11.0205 3.6161 -1.4419 36 1 9.5011 4.3873 -1.9556 37 1 9.6425 2.6129 -1.9558 38 1 12.4575 4.3408 -0.5524 39 1 13.0234 4.1386 1.1231 40 1 11.7546 3.0704 0.4773 41 1 12.5006 6.5778 1.2532 42 1 10.7873 7.0327 1.4141 43 1 12.4670 8.9297 4.0867 44 1 6.1236 -0.2118 -0.0088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778536982.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:12 Heat of formation + Delta-G solvation = -94.503624 kcal Electronic energy + Delta-G solvation = -28487.331294 eV Core-core repulsion = 24213.635002 eV Total energy + Delta-G solvation = -4273.696292 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.88177 -40.55179 -39.19763 -38.70721 -36.47102 -34.89676 -34.69928 -32.91993 -32.72798 -31.65212 -30.80961 -27.70447 -26.23983 -25.96002 -25.47083 -24.28131 -23.27139 -22.70113 -21.32791 -19.18040 -18.91169 -18.82238 -17.88507 -17.05338 -16.95460 -16.51577 -16.25962 -16.03501 -15.46650 -15.36010 -14.98878 -14.90231 -14.55639 -14.27715 -13.96383 -13.58965 -13.24490 -13.17449 -13.14078 -12.82911 -12.40062 -12.36774 -12.16958 -12.09197 -11.89314 -11.75840 -11.66776 -11.41697 -11.31572 -11.19756 -11.02209 -10.88607 -10.72119 -10.57788 -10.16334 -9.75564 -9.62249 -9.28078 -8.88229 -8.44247 -7.70963 -6.05120 -4.09775 -0.05181 0.56969 2.11340 2.15813 2.38562 3.26486 3.30211 3.30969 3.38192 3.42798 3.46635 3.59753 3.87690 3.97737 4.44096 4.44710 4.46626 4.52822 4.70138 4.82850 4.84966 4.97942 5.06193 5.07583 5.08494 5.29339 5.29583 5.43641 5.51086 5.58490 5.65256 5.65743 5.86006 5.99869 6.22225 6.25919 6.45278 6.60841 6.98742 7.11987 7.40645 7.47438 7.59936 7.91247 8.21182 8.30552 8.86507 9.01333 9.55231 11.03026 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.015889 B = 0.002290 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.780458 B =12224.623988 C =13206.064202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.290 6.290 4 C 0.306 3.694 5 C 0.048 3.952 6 N -0.344 5.344 7 C -0.005 4.005 8 C 0.533 3.467 9 O -0.501 6.501 10 O -0.299 6.299 11 C 0.067 3.933 12 H 0.108 0.892 13 C -0.170 4.170 14 C 0.508 3.492 15 O -0.515 6.515 16 N -0.596 5.596 17 C 0.076 3.924 18 C 0.246 3.754 19 C -0.528 4.528 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.894 5.894 23 Si 0.899 3.101 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.282 1.282 27 C 0.166 3.834 28 N -0.503 5.503 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.189 0.811 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.058 0.942 41 H 0.036 0.964 42 H 0.046 0.954 43 H 0.263 0.737 44 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.852 -18.211 -11.664 27.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.015 4.015 3 O -0.194 6.194 4 C 0.122 3.878 5 C -0.120 4.120 6 N -0.060 5.060 7 C -0.141 4.141 8 C 0.375 3.625 9 O -0.389 6.389 10 O -0.212 6.212 11 C 0.009 3.991 12 H 0.125 0.875 13 C -0.227 4.227 14 C 0.292 3.708 15 O -0.389 6.389 16 N -0.330 5.330 17 C -0.068 4.068 18 C 0.128 3.872 19 C -0.566 4.566 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.533 5.533 23 Si 0.726 3.274 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.208 1.208 27 C 0.008 3.992 28 N -0.233 5.233 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.206 0.794 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -17.179 -17.688 -11.393 27.162 hybrid contribution 0.287 -0.486 1.101 1.238 sum -16.891 -18.174 -10.292 26.861 Atomic orbital electron populations 1.21838 0.92346 1.03277 1.03668 1.22826 0.95371 0.80257 1.03096 1.86267 1.15558 1.31682 1.85940 1.21426 0.85284 0.91796 0.89324 1.23181 0.91466 0.95250 1.02121 1.68594 1.02935 1.31958 1.02557 1.20850 0.92434 0.91282 1.09541 1.20321 0.87362 0.82104 0.72733 1.90849 1.59931 1.41590 1.46548 1.86788 1.23999 1.28415 1.82035 1.22750 0.77636 0.99873 0.98851 0.87485 1.22286 1.03201 1.03576 0.93652 1.19716 0.83656 0.86692 0.80726 1.90729 1.49469 1.48480 1.50269 1.48062 1.03876 1.24069 1.56985 1.21843 0.93265 0.92319 0.99346 1.19358 0.96275 0.80298 0.91283 1.21466 1.46616 0.96991 0.91567 0.92363 1.24940 0.95160 0.94879 0.99147 1.69945 1.46645 1.01522 1.35154 0.86430 0.77529 0.78394 0.85002 1.19812 1.20943 1.20826 1.23516 0.90142 0.97050 0.88517 1.68315 1.04863 1.32354 1.17733 0.91340 0.91384 0.89947 0.91035 0.91002 0.79425 0.89147 0.90825 0.91277 0.93124 0.90294 0.92352 0.94577 0.93597 0.92731 0.79290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 10.28 37.16 0.38 -0.25 16 2 C 0.06 0.37 6.04 37.16 0.22 0.59 16 3 O -0.29 -2.45 10.12 -18.10 -0.18 -2.63 16 4 C 0.31 3.01 7.51 -16.69 -0.13 2.88 16 5 C 0.05 0.50 11.18 -17.16 -0.19 0.31 16 6 N -0.34 -4.69 10.27 -9.50 -0.10 -4.79 16 7 C 0.00 -0.06 6.74 -82.90 -0.56 -0.62 16 8 C 0.53 8.17 7.92 34.64 0.27 8.44 16 9 O -0.50 -7.65 15.59 -19.24 -0.30 -7.95 16 10 O -0.30 -5.36 9.25 -47.20 -0.44 -5.79 16 11 C 0.07 1.14 2.17 -27.89 -0.06 1.08 16 12 H 0.11 1.70 6.15 -51.93 -0.32 1.38 16 13 C -0.17 -2.22 9.28 37.16 0.34 -1.88 16 14 C 0.51 11.09 7.10 -10.99 -0.08 11.01 16 15 O -0.51 -13.71 16.09 -14.05 -0.23 -13.94 16 16 N -0.60 -12.71 2.86 -182.96 -0.52 -13.24 16 17 C 0.08 1.18 8.92 59.84 0.53 1.71 16 18 C 0.25 6.46 5.16 -5.19 -0.03 6.43 16 19 C -0.53 -15.08 9.39 -34.44 -0.32 -15.40 16 20 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 23 Si 0.90 22.09 29.54 -169.99 -5.02 17.06 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.17 1.75 10.76 -17.01 -0.18 1.57 16 28 N -0.50 -5.12 9.37 -12.74 -0.12 -5.24 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.21 8.14 -51.92 -0.42 -0.21 16 32 H 0.07 0.43 8.11 -51.93 -0.42 0.01 16 33 H 0.07 0.45 8.11 -51.92 -0.42 0.03 16 34 H 0.19 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.09 1.03 5.12 -51.93 -0.27 0.76 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.65 7.02 -51.93 -0.36 0.28 16 39 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 40 H 0.06 0.76 6.08 -51.93 -0.32 0.44 16 41 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 42 H 0.05 1.35 7.42 -51.93 -0.39 0.97 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.19 1.58 7.64 -52.48 -0.40 1.18 16 LS Contribution 382.26 15.07 5.76 5.76 Total: -1.00 -36.02 382.26 -6.11 -42.13 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -5.81 Total: -3.03 kcal Atomic # 6 Polarization: 17.42 SS G_CDS: 0.11 Total: 17.54 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.00 Total: -49.15 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -1.15 Total: -30.31 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.02 -6.11 -42.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778536982.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.378 kcal (2) G-P(sol) polarization free energy of solvation -36.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds