Wall clock time and date at job start Tue Mar 31 2020 22:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42899 * 109.47328 * 2 1 4 4 C 1.35469 * 117.00238 * 179.97438 * 3 2 1 5 5 C 1.39664 * 119.97236 * 180.02562 * 4 3 2 6 6 N 1.31512 * 120.04140 * 180.02562 * 5 4 3 7 7 C 1.33250 * 119.98409 * 359.97438 * 6 5 4 8 8 C 1.47789 * 120.02324 * 179.97438 * 7 6 5 9 9 O 1.21469 * 120.00054 * 180.02562 * 8 7 6 10 10 O 1.34715 * 120.00093 * 0.02562 * 8 7 6 11 11 C 1.45206 * 116.99993 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46660 * 329.99680 * 11 10 8 13 13 C 1.52997 * 109.47147 * 89.99916 * 11 10 8 14 14 C 1.50697 * 109.47064 * 210.00317 * 11 10 8 15 15 O 1.21285 * 120.00040 * 354.99791 * 14 11 10 16 16 N 1.34778 * 119.99902 * 174.99933 * 14 11 10 17 17 C 1.46493 * 120.00087 * 359.97438 * 16 14 11 18 18 C 1.46505 * 119.99823 * 179.97438 * 16 14 11 19 19 C 1.50697 * 109.46900 * 89.99912 * 18 16 14 20 20 H 1.07995 * 120.00161 * 0.02562 * 19 18 16 21 21 C 1.37880 * 120.00017 * 179.97438 * 19 18 16 22 22 N 1.31522 * 119.99535 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00201 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46851 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46994 * 119.99941 * 23 21 19 26 26 H 1.48495 * 109.47157 * 240.00302 * 23 21 19 27 27 C 1.39438 * 119.94872 * 0.25181 * 7 6 5 28 28 N 1.32064 * 119.95630 * 359.50828 * 27 7 6 29 29 H 1.08999 * 109.47011 * 299.99667 * 1 2 3 30 30 H 1.08999 * 109.47311 * 59.99974 * 1 2 3 31 31 H 1.09007 * 109.47260 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47037 * 239.99777 * 2 1 3 33 33 H 1.09007 * 109.47188 * 120.00309 * 2 1 3 34 34 H 1.07998 * 119.98484 * 0.02562 * 5 4 3 35 35 H 1.09002 * 109.47153 * 179.97438 * 13 11 10 36 36 H 1.09001 * 109.46832 * 60.00119 * 13 11 10 37 37 H 1.09004 * 109.47261 * 300.00100 * 13 11 10 38 38 H 1.09002 * 109.47115 * 89.99747 * 17 16 14 39 39 H 1.08998 * 109.47192 * 209.99907 * 17 16 14 40 40 H 1.08999 * 109.47064 * 329.99847 * 17 16 14 41 41 H 1.08997 * 109.46961 * 210.00478 * 18 16 14 42 42 H 1.09005 * 109.46984 * 329.99937 * 18 16 14 43 43 H 0.97003 * 119.99529 * 179.97438 * 22 21 19 44 44 H 1.08007 * 120.02298 * 179.72039 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3494 1.5248 0.0005 5 6 3.8826 2.8156 0.0011 6 7 5.1861 2.9895 0.0011 7 6 5.9988 1.9335 0.0011 8 6 7.4639 2.1279 0.0006 9 8 8.2043 1.1650 0.0001 10 8 7.9781 3.3731 0.0006 11 6 9.4256 3.4884 0.0006 12 1 9.8584 2.6302 0.5145 13 6 9.9340 3.5290 -1.4419 14 6 9.8285 4.7549 0.7111 15 8 8.9797 5.5328 1.0921 16 7 11.1323 5.0230 0.9231 17 6 12.1576 4.0831 0.4634 18 6 11.5240 6.2544 1.6133 19 6 11.5951 5.9980 3.0966 20 1 11.3714 5.0159 3.4862 21 6 11.9469 7.0169 3.9564 22 7 12.2199 8.2128 3.4818 23 14 12.0357 6.6989 5.7949 24 1 11.6859 5.2820 6.0696 25 1 13.4134 6.9707 6.2783 26 1 11.0793 7.5907 6.4983 27 6 5.4659 0.6450 -0.0042 28 7 4.1566 0.4729 0.0006 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.2240 3.6716 0.0015 35 1 11.0205 3.6161 -1.4419 36 1 9.5011 4.3873 -1.9556 37 1 9.6425 2.6129 -1.9558 38 1 12.4575 4.3408 -0.5524 39 1 13.0234 4.1386 1.1231 40 1 11.7546 3.0704 0.4773 41 1 12.5006 6.5778 1.2532 42 1 10.7873 7.0327 1.4141 43 1 12.4670 8.9297 4.0867 44 1 6.1236 -0.2118 -0.0088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778536982.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:11 Heat of formation + Delta-G solvation = -120.664381 kcal Electronic energy + Delta-G solvation = -28488.465709 eV Core-core repulsion = 24213.635002 eV Total energy + Delta-G solvation = -4274.830707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.75182 -41.77231 -40.54422 -39.69343 -37.74455 -36.70097 -35.55474 -34.89991 -33.46402 -32.94390 -31.60458 -29.60559 -27.66965 -26.91136 -26.35892 -25.83056 -24.35772 -23.75200 -22.56593 -20.46298 -19.97350 -19.78500 -18.92331 -18.69741 -18.20718 -17.77601 -17.60651 -17.28323 -17.08834 -16.47783 -16.11373 -16.07924 -15.72444 -15.53935 -14.99617 -14.79279 -14.58406 -14.28315 -14.10390 -13.81508 -13.63000 -13.52241 -13.50560 -13.31902 -13.09837 -13.03555 -12.82516 -12.62471 -12.54678 -12.52488 -12.46370 -12.23933 -12.14711 -11.96596 -11.85363 -11.69608 -10.67281 -10.65957 -10.55665 -10.08079 -9.51385 -8.24509 -6.38800 -0.94270 -0.25712 1.01651 1.12213 1.35130 1.37833 1.49209 1.58376 1.62665 2.24535 2.39453 2.40810 2.70029 2.84111 3.05363 3.10702 3.39417 3.52699 3.73152 3.79002 3.83746 4.04108 4.11564 4.34383 4.34663 4.39540 4.49771 4.57086 4.61966 4.69723 4.87426 4.91342 4.93254 4.94524 5.08287 5.11888 5.21158 5.21749 5.51270 5.75382 5.77079 5.79282 6.03064 6.21889 6.47205 6.61327 6.70213 7.20774 7.35785 8.82954 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.015889 B = 0.002290 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.780458 B =12224.623988 C =13206.064202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.290 6.290 4 C 0.316 3.684 5 C 0.050 3.950 6 N -0.380 5.380 7 C -0.030 4.030 8 C 0.533 3.467 9 O -0.504 6.504 10 O -0.326 6.326 11 C 0.077 3.923 12 H 0.122 0.878 13 C -0.161 4.161 14 C 0.498 3.502 15 O -0.578 6.578 16 N -0.599 5.599 17 C 0.067 3.933 18 C 0.260 3.740 19 C -0.545 4.545 20 H 0.052 0.948 21 C 0.008 3.992 22 N -0.925 5.925 23 Si 0.967 3.033 24 H -0.269 1.269 25 H -0.266 1.266 26 H -0.282 1.282 27 C 0.182 3.818 28 N -0.504 5.504 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.212 0.788 35 H 0.111 0.889 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.035 0.965 42 H 0.000 1.000 43 H 0.268 0.732 44 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.317 -20.832 -11.906 29.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.193 6.193 4 C 0.131 3.869 5 C -0.120 4.120 6 N -0.097 5.097 7 C -0.166 4.166 8 C 0.376 3.624 9 O -0.393 6.393 10 O -0.240 6.240 11 C 0.018 3.982 12 H 0.140 0.860 13 C -0.218 4.218 14 C 0.285 3.715 15 O -0.458 6.458 16 N -0.331 5.331 17 C -0.074 4.074 18 C 0.139 3.861 19 C -0.584 4.584 20 H 0.070 0.930 21 C -0.191 4.191 22 N -0.565 5.565 23 Si 0.792 3.208 24 H -0.194 1.194 25 H -0.191 1.191 26 H -0.208 1.208 27 C 0.024 3.976 28 N -0.234 5.234 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.228 0.772 35 H 0.130 0.870 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.053 0.947 42 H 0.018 0.982 43 H 0.077 0.923 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -17.608 -20.368 -11.667 29.343 hybrid contribution 0.290 0.295 1.140 1.212 sum -17.317 -20.073 -10.527 28.525 Atomic orbital electron populations 1.21863 0.90601 1.04548 1.03662 1.23099 0.96723 0.79080 1.03329 1.86293 1.14560 1.33289 1.85180 1.21509 0.85887 0.91620 0.87901 1.23534 0.90728 0.96436 1.01264 1.68498 1.04376 1.32977 1.03818 1.20757 0.91322 0.92295 1.12184 1.20644 0.88281 0.81196 0.72285 1.90820 1.60264 1.41199 1.46972 1.86783 1.24339 1.30265 1.82654 1.22681 0.77973 0.96883 1.00615 0.86011 1.22305 1.04292 1.04411 0.90829 1.20640 0.83039 0.87790 0.80004 1.90685 1.51174 1.50955 1.52947 1.48042 1.05320 1.23540 1.56202 1.22215 0.91719 0.92548 1.00919 1.18853 0.94594 0.81631 0.91050 1.21720 1.46836 0.96875 0.92946 0.93009 1.25845 0.94600 0.94592 1.04067 1.70051 1.47113 1.02370 1.36965 0.85374 0.78217 0.78258 0.78989 1.19369 1.19123 1.20775 1.23757 0.90436 0.96514 0.86856 1.68415 1.04625 1.32280 1.18100 0.91472 0.91248 0.88033 0.90613 0.90937 0.77156 0.87021 0.91639 0.88995 0.89647 0.90626 0.89250 0.94717 0.98166 0.92315 0.77192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.28 71.98 0.74 -0.17 16 2 C 0.05 0.55 6.04 71.98 0.43 0.98 16 3 O -0.29 -4.39 10.12 -87.68 -0.89 -5.28 16 4 C 0.32 5.78 7.51 84.92 0.64 6.42 16 5 C 0.05 1.00 11.18 85.09 0.95 1.95 16 6 N -0.38 -10.43 10.27 -183.96 -1.89 -12.32 16 7 C -0.03 -0.80 6.74 41.75 0.28 -0.52 16 8 C 0.53 16.15 7.92 70.35 0.56 16.70 16 9 O -0.50 -14.69 15.59 19.94 0.31 -14.38 16 10 O -0.33 -11.82 9.25 -49.88 -0.46 -12.28 16 11 C 0.08 2.55 2.17 29.85 0.06 2.61 16 12 H 0.12 3.65 6.15 -2.39 -0.01 3.64 16 13 C -0.16 -3.90 9.28 71.98 0.67 -3.23 16 14 C 0.50 22.29 7.10 87.66 0.62 22.91 16 15 O -0.58 -32.54 16.09 15.70 0.25 -32.28 16 16 N -0.60 -25.82 2.86 -851.14 -2.43 -28.25 16 17 C 0.07 1.96 8.92 127.77 1.14 3.10 16 18 C 0.26 14.13 5.16 85.63 0.44 14.57 16 19 C -0.55 -31.92 9.39 25.60 0.24 -31.68 16 20 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 21 C 0.01 0.48 5.46 84.65 0.46 0.94 16 22 N -0.93 -56.25 13.29 21.45 0.28 -55.96 16 23 Si 0.97 45.61 29.54 68.60 2.03 47.64 16 24 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 27 C 0.18 3.60 10.76 84.95 0.91 4.52 16 28 N -0.50 -9.46 9.37 -307.04 -2.88 -12.34 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.10 0.25 8.14 -2.38 -0.02 0.23 16 32 H 0.08 0.75 8.11 -2.39 -0.02 0.73 16 33 H 0.07 0.77 8.11 -2.38 -0.02 0.75 16 34 H 0.21 2.97 8.06 -2.91 -0.02 2.94 16 35 H 0.11 2.18 5.12 -2.39 -0.01 2.16 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.09 1.92 7.02 -2.39 -0.02 1.90 16 39 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 40 H 0.09 2.05 6.08 -2.39 -0.01 2.04 16 41 H 0.03 1.87 8.07 -2.39 -0.02 1.85 16 42 H 0.00 0.01 7.42 -2.38 -0.02 -0.01 16 43 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 44 H 0.21 3.09 7.64 -2.91 -0.02 3.07 16 Total: -1.00 -81.80 382.26 3.52 -78.28 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: 1.03 Total: 8.06 kcal Atomic # 6 Polarization: 30.96 SS G_CDS: 8.16 Total: 39.12 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -6.91 Total: -108.87 kcal Atomic # 8 Polarization: -63.44 SS G_CDS: -0.78 Total: -64.23 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -81.80 3.52 -78.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778536982.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.381 kcal (2) G-P(sol) polarization free energy of solvation -81.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds