Wall clock time and date at job start Tue Mar 31 2020 22:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42901 * 109.46881 * 2 1 4 4 C 1.35473 * 117.00190 * 180.02562 * 3 2 1 5 5 C 1.39658 * 119.97762 * 180.02562 * 4 3 2 6 6 N 1.31502 * 120.04650 * 180.02562 * 5 4 3 7 7 C 1.33253 * 119.98336 * 359.97438 * 6 5 4 8 8 C 1.47790 * 120.02455 * 179.97438 * 7 6 5 9 9 O 1.21465 * 119.99806 * 179.97438 * 8 7 6 10 10 O 1.34718 * 119.99903 * 359.97438 * 8 7 6 11 11 C 1.45198 * 116.99748 * 179.97438 * 10 8 7 12 12 H 1.09007 * 109.47206 * 30.00933 * 11 10 8 13 13 C 1.52996 * 109.47742 * 270.00587 * 11 10 8 14 14 C 1.50706 * 109.47101 * 150.00502 * 11 10 8 15 15 O 1.21281 * 119.99699 * 5.00057 * 14 11 10 16 16 N 1.34773 * 120.00080 * 185.00548 * 14 11 10 17 17 C 1.46499 * 120.00036 * 359.72107 * 16 14 11 18 18 C 1.46506 * 119.99969 * 180.02562 * 16 14 11 19 19 C 1.50703 * 109.46877 * 269.72057 * 18 16 14 20 20 H 1.08005 * 119.99817 * 0.02562 * 19 18 16 21 21 C 1.37871 * 120.00081 * 179.97438 * 19 18 16 22 22 N 1.31510 * 120.00254 * 180.02562 * 21 19 18 23 23 Si 1.86811 * 119.99850 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46778 * 89.99559 * 23 21 19 25 25 H 1.48493 * 109.46886 * 209.99446 * 23 21 19 26 26 H 1.48492 * 109.47026 * 329.99859 * 23 21 19 27 27 C 1.39427 * 119.94742 * 0.24871 * 7 6 5 28 28 N 1.32072 * 119.95933 * 359.50709 * 27 7 6 29 29 H 1.08998 * 109.46542 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46855 * 299.99626 * 1 2 3 31 31 H 1.08998 * 109.47371 * 59.99963 * 1 2 3 32 32 H 1.08995 * 109.46586 * 240.00503 * 2 1 3 33 33 H 1.08998 * 109.47371 * 120.00037 * 2 1 3 34 34 H 1.08006 * 119.97734 * 0.02573 * 5 4 3 35 35 H 1.08996 * 109.47639 * 180.02562 * 13 11 10 36 36 H 1.09007 * 109.47052 * 300.00440 * 13 11 10 37 37 H 1.09002 * 109.46967 * 59.99917 * 13 11 10 38 38 H 1.09003 * 109.47269 * 270.27384 * 17 16 14 39 39 H 1.08994 * 109.47173 * 30.28203 * 17 16 14 40 40 H 1.09005 * 109.47077 * 150.28374 * 17 16 14 41 41 H 1.09000 * 109.46803 * 29.71536 * 18 16 14 42 42 H 1.09000 * 109.47214 * 149.72329 * 18 16 14 43 43 H 0.97008 * 120.00053 * 180.02562 * 22 21 19 44 44 H 1.08002 * 120.02522 * 179.72669 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3494 1.5249 -0.0005 5 6 3.8826 2.8157 0.0000 6 7 5.1860 2.9897 -0.0011 7 6 5.9988 1.9337 -0.0021 8 6 7.4639 2.1282 -0.0038 9 8 8.2043 1.1653 -0.0043 10 8 7.9781 3.3733 -0.0049 11 6 9.4254 3.4888 -0.0060 12 1 9.8580 2.6302 -0.5198 13 6 9.9350 3.5300 1.4360 14 6 9.8279 4.7550 -0.7173 15 8 8.9787 5.5327 -1.0980 16 7 11.1314 5.0230 -0.9305 17 6 12.1574 4.0865 -0.4653 18 6 11.5226 6.2542 -1.6215 19 6 11.5992 5.9954 -3.1042 20 1 11.3782 5.0123 -3.4928 21 6 11.9504 7.0139 -3.9645 22 7 12.0168 6.7882 -5.2584 23 14 12.3321 8.7145 -3.2922 24 1 13.7814 8.8107 -2.9830 25 1 11.9729 9.7392 -4.3052 26 1 11.5454 8.9453 -2.0541 27 6 5.4660 0.6453 -0.0073 28 7 4.1566 0.4730 -0.0014 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.2239 3.6717 0.0012 35 1 11.0215 3.6171 1.4352 36 1 9.5024 4.3885 1.9499 37 1 9.6440 2.6142 1.9505 38 1 12.4534 4.3471 0.5509 39 1 11.7569 3.0729 -0.4785 40 1 13.0254 4.1428 -1.1222 41 1 10.7834 7.0311 -1.4260 42 1 12.4973 6.5804 -1.2588 43 1 12.2643 7.5047 -5.8637 44 1 6.1236 -0.2115 -0.0126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778536983.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:15 Heat of formation + Delta-G solvation = -89.615005 kcal Electronic energy + Delta-G solvation = -28510.641729 eV Core-core repulsion = 24237.157424 eV Total energy + Delta-G solvation = -4273.484305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -41.88490 -40.58273 -39.24479 -38.76604 -36.50962 -35.01765 -34.70180 -32.88930 -32.70465 -31.73841 -30.84014 -28.31101 -26.34320 -25.99322 -25.48494 -24.27358 -23.25831 -22.49906 -21.24522 -19.17924 -18.94931 -18.82881 -17.90433 -17.06129 -17.00363 -16.92806 -16.31707 -16.09852 -15.52041 -15.36401 -14.98672 -14.93266 -14.68561 -14.17724 -13.90990 -13.53808 -13.43404 -13.19946 -13.15593 -12.89927 -12.43441 -12.39118 -12.30818 -12.21616 -11.89287 -11.84225 -11.74096 -11.58903 -11.42894 -11.31364 -11.04377 -10.95668 -10.75237 -10.51818 -10.11034 -9.76015 -9.55073 -9.28203 -8.99884 -8.59661 -7.78323 -6.08760 -4.08150 -0.05352 0.56880 2.09607 2.15000 2.36963 3.19263 3.27203 3.29353 3.35596 3.40178 3.46752 3.55848 3.83559 3.94020 4.39710 4.44728 4.47100 4.51062 4.68768 4.76263 4.83448 4.92688 5.03775 5.06053 5.07607 5.24346 5.29759 5.41849 5.47926 5.56679 5.60513 5.60861 5.77511 5.94641 6.16492 6.22509 6.45323 6.59195 6.62764 6.93680 7.11057 7.24815 7.56693 7.59579 8.11670 8.45164 8.84213 8.94933 9.50667 11.04499 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.002247 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.036574 B =12458.165438 C =13293.790195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.290 6.290 4 C 0.306 3.694 5 C 0.048 3.952 6 N -0.344 5.344 7 C -0.005 4.005 8 C 0.533 3.467 9 O -0.500 6.500 10 O -0.300 6.300 11 C 0.069 3.931 12 H 0.110 0.890 13 C -0.170 4.170 14 C 0.511 3.489 15 O -0.513 6.513 16 N -0.592 5.592 17 C 0.075 3.925 18 C 0.217 3.783 19 C -0.531 4.531 20 H 0.075 0.925 21 C 0.072 3.928 22 N -0.896 5.896 23 Si 0.875 3.125 24 H -0.275 1.275 25 H -0.283 1.283 26 H -0.263 1.263 27 C 0.167 3.833 28 N -0.503 5.503 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.189 0.811 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.081 0.919 41 H 0.043 0.957 42 H 0.029 0.971 43 H 0.265 0.735 44 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.530 -15.194 15.826 27.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.016 4.016 3 O -0.194 6.194 4 C 0.122 3.878 5 C -0.120 4.120 6 N -0.061 5.061 7 C -0.141 4.141 8 C 0.375 3.625 9 O -0.388 6.388 10 O -0.213 6.213 11 C 0.010 3.990 12 H 0.127 0.873 13 C -0.228 4.228 14 C 0.295 3.705 15 O -0.388 6.388 16 N -0.325 5.325 17 C -0.068 4.068 18 C 0.097 3.903 19 C -0.570 4.570 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.534 5.534 23 Si 0.702 3.298 24 H -0.201 1.201 25 H -0.209 1.209 26 H -0.188 1.188 27 C 0.008 3.992 28 N -0.232 5.232 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.206 0.794 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.061 0.939 42 H 0.047 0.953 43 H 0.075 0.925 44 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -16.879 -14.771 15.435 27.227 hybrid contribution 0.443 0.473 0.043 0.649 sum -16.436 -14.298 15.478 26.723 Atomic orbital electron populations 1.21840 0.92344 1.03282 1.03663 1.22829 0.95375 0.80243 1.03109 1.86268 1.15553 1.31698 1.85928 1.21426 0.85292 0.91794 0.89282 1.23171 0.91458 0.95255 1.02145 1.68583 1.02946 1.31968 1.02584 1.20835 0.92388 0.91297 1.09608 1.20315 0.87376 0.82045 0.72723 1.90852 1.59917 1.41552 1.46458 1.86781 1.23843 1.28532 1.82131 1.22699 0.77826 0.99686 0.98786 0.87276 1.22296 1.03172 1.03666 0.93623 1.19723 0.83408 0.86799 0.80539 1.90728 1.49405 1.48512 1.50145 1.47716 1.04159 1.23735 1.56933 1.21881 0.93211 0.92515 0.99223 1.19724 0.95481 0.82091 0.92992 1.21320 1.47258 0.99194 0.89205 0.90723 1.24860 0.94798 0.98665 0.94698 1.69897 1.48101 1.33207 1.02231 0.86854 0.78889 0.84510 0.79556 1.20076 1.20894 1.18753 1.23519 0.90149 0.97050 0.88446 1.68324 1.04854 1.32342 1.17728 0.89942 0.91393 0.91334 0.90975 0.91036 0.79433 0.89139 0.90849 0.91152 0.93021 0.92002 0.90063 0.93867 0.95268 0.92525 0.79267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 10.28 37.16 0.38 -0.25 16 2 C 0.06 0.37 6.04 37.16 0.22 0.59 16 3 O -0.29 -2.45 10.12 -18.11 -0.18 -2.64 16 4 C 0.31 3.01 7.51 -16.69 -0.13 2.89 16 5 C 0.05 0.50 11.18 -17.16 -0.19 0.31 16 6 N -0.34 -4.67 10.27 -9.50 -0.10 -4.77 16 7 C 0.00 -0.06 6.74 -82.90 -0.56 -0.62 16 8 C 0.53 8.13 7.92 34.64 0.27 8.41 16 9 O -0.50 -7.61 15.59 -19.24 -0.30 -7.91 16 10 O -0.30 -5.30 9.25 -47.21 -0.44 -5.73 16 11 C 0.07 1.14 2.17 -27.88 -0.06 1.08 16 12 H 0.11 1.71 6.16 -51.93 -0.32 1.39 16 13 C -0.17 -2.13 9.27 37.16 0.34 -1.79 16 14 C 0.51 10.90 7.10 -10.98 -0.08 10.82 16 15 O -0.51 -13.36 16.08 -14.05 -0.23 -13.58 16 16 N -0.59 -12.21 2.86 -182.95 -0.52 -12.74 16 17 C 0.08 1.12 8.92 59.85 0.53 1.66 16 18 C 0.22 5.31 4.23 -5.19 -0.02 5.29 16 19 C -0.53 -15.36 9.94 -34.44 -0.34 -15.70 16 20 H 0.07 2.37 8.06 -52.48 -0.42 1.95 16 21 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 22 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 23 Si 0.88 21.54 27.47 -169.99 -4.67 16.88 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 26 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 27 C 0.17 1.76 10.76 -17.01 -0.18 1.58 16 28 N -0.50 -5.13 9.37 -12.74 -0.12 -5.25 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.27 8.14 -51.92 -0.42 -0.15 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 33 H 0.07 0.43 8.11 -51.93 -0.42 0.01 16 34 H 0.19 1.40 8.06 -52.48 -0.42 0.97 16 35 H 0.09 0.97 5.10 -51.93 -0.26 0.70 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.61 7.01 -51.93 -0.36 0.25 16 39 H 0.06 0.79 6.08 -51.93 -0.32 0.47 16 40 H 0.08 1.24 8.07 -51.93 -0.42 0.83 16 41 H 0.04 1.14 6.47 -51.93 -0.34 0.80 16 42 H 0.03 0.66 7.50 -51.93 -0.39 0.27 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.19 1.59 7.64 -52.49 -0.40 1.19 16 LS Contribution 378.63 15.07 5.71 5.71 Total: -1.00 -37.04 378.63 -5.75 -42.80 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -5.78 Total: -2.01 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: 0.10 Total: 16.27 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: 0.03 Total: -49.77 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -1.15 Total: -29.86 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.04 -5.75 -42.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778536983.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.819 kcal (2) G-P(sol) polarization free energy of solvation -37.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds