Wall clock time and date at job start Tue Mar 31 2020 22:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42901 * 109.46881 * 2 1 4 4 C 1.35473 * 117.00190 * 180.02562 * 3 2 1 5 5 C 1.39658 * 119.97762 * 180.02562 * 4 3 2 6 6 N 1.31502 * 120.04650 * 180.02562 * 5 4 3 7 7 C 1.33253 * 119.98336 * 359.97438 * 6 5 4 8 8 C 1.47790 * 120.02455 * 179.97438 * 7 6 5 9 9 O 1.21465 * 119.99806 * 179.97438 * 8 7 6 10 10 O 1.34718 * 119.99903 * 359.97438 * 8 7 6 11 11 C 1.45198 * 116.99748 * 179.97438 * 10 8 7 12 12 H 1.09007 * 109.47206 * 30.00933 * 11 10 8 13 13 C 1.52996 * 109.47742 * 270.00587 * 11 10 8 14 14 C 1.50706 * 109.47101 * 150.00502 * 11 10 8 15 15 O 1.21281 * 119.99699 * 5.00057 * 14 11 10 16 16 N 1.34773 * 120.00080 * 185.00548 * 14 11 10 17 17 C 1.46499 * 120.00036 * 359.72107 * 16 14 11 18 18 C 1.46506 * 119.99969 * 180.02562 * 16 14 11 19 19 C 1.50703 * 109.46877 * 269.72057 * 18 16 14 20 20 H 1.08005 * 119.99817 * 0.02562 * 19 18 16 21 21 C 1.37871 * 120.00081 * 179.97438 * 19 18 16 22 22 N 1.31510 * 120.00254 * 180.02562 * 21 19 18 23 23 Si 1.86811 * 119.99850 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46778 * 89.99559 * 23 21 19 25 25 H 1.48493 * 109.46886 * 209.99446 * 23 21 19 26 26 H 1.48492 * 109.47026 * 329.99859 * 23 21 19 27 27 C 1.39427 * 119.94742 * 0.24871 * 7 6 5 28 28 N 1.32072 * 119.95933 * 359.50709 * 27 7 6 29 29 H 1.08998 * 109.46542 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46855 * 299.99626 * 1 2 3 31 31 H 1.08998 * 109.47371 * 59.99963 * 1 2 3 32 32 H 1.08995 * 109.46586 * 240.00503 * 2 1 3 33 33 H 1.08998 * 109.47371 * 120.00037 * 2 1 3 34 34 H 1.08006 * 119.97734 * 0.02573 * 5 4 3 35 35 H 1.08996 * 109.47639 * 180.02562 * 13 11 10 36 36 H 1.09007 * 109.47052 * 300.00440 * 13 11 10 37 37 H 1.09002 * 109.46967 * 59.99917 * 13 11 10 38 38 H 1.09003 * 109.47269 * 270.27384 * 17 16 14 39 39 H 1.08994 * 109.47173 * 30.28203 * 17 16 14 40 40 H 1.09005 * 109.47077 * 150.28374 * 17 16 14 41 41 H 1.09000 * 109.46803 * 29.71536 * 18 16 14 42 42 H 1.09000 * 109.47214 * 149.72329 * 18 16 14 43 43 H 0.97008 * 120.00053 * 180.02562 * 22 21 19 44 44 H 1.08002 * 120.02522 * 179.72669 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3494 1.5249 -0.0005 5 6 3.8826 2.8157 0.0000 6 7 5.1860 2.9897 -0.0011 7 6 5.9988 1.9337 -0.0021 8 6 7.4639 2.1282 -0.0038 9 8 8.2043 1.1653 -0.0043 10 8 7.9781 3.3733 -0.0049 11 6 9.4254 3.4888 -0.0060 12 1 9.8580 2.6302 -0.5198 13 6 9.9350 3.5300 1.4360 14 6 9.8279 4.7550 -0.7173 15 8 8.9787 5.5327 -1.0980 16 7 11.1314 5.0230 -0.9305 17 6 12.1574 4.0865 -0.4653 18 6 11.5226 6.2542 -1.6215 19 6 11.5992 5.9954 -3.1042 20 1 11.3782 5.0123 -3.4928 21 6 11.9504 7.0139 -3.9645 22 7 12.0168 6.7882 -5.2584 23 14 12.3321 8.7145 -3.2922 24 1 13.7814 8.8107 -2.9830 25 1 11.9729 9.7392 -4.3052 26 1 11.5454 8.9453 -2.0541 27 6 5.4660 0.6453 -0.0073 28 7 4.1566 0.4730 -0.0014 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.2239 3.6717 0.0012 35 1 11.0215 3.6171 1.4352 36 1 9.5024 4.3885 1.9499 37 1 9.6440 2.6142 1.9505 38 1 12.4534 4.3471 0.5509 39 1 11.7569 3.0729 -0.4785 40 1 13.0254 4.1428 -1.1222 41 1 10.7834 7.0311 -1.4260 42 1 12.4973 6.5804 -1.2588 43 1 12.2643 7.5047 -5.8637 44 1 6.1236 -0.2115 -0.0126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778536983.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:14 Heat of formation + Delta-G solvation = -117.666607 kcal Electronic energy + Delta-G solvation = -28511.858138 eV Core-core repulsion = 24237.157424 eV Total energy + Delta-G solvation = -4274.700714 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.76016 -41.79393 -40.59248 -39.70211 -37.76775 -36.75206 -35.56088 -34.85367 -33.49505 -33.03763 -31.62905 -30.15646 -27.71819 -26.91972 -26.35923 -25.68845 -24.16976 -23.72992 -22.52683 -20.46890 -19.98189 -19.79221 -19.15492 -18.92549 -18.23922 -17.79065 -17.65185 -17.29120 -17.08322 -16.53021 -16.11903 -15.99191 -15.73317 -15.47269 -15.15879 -14.73208 -14.71418 -14.38641 -14.17721 -13.82621 -13.70766 -13.61886 -13.52342 -13.45124 -13.10548 -13.08947 -12.84630 -12.60507 -12.55236 -12.46756 -12.41987 -12.17319 -12.00178 -11.97238 -11.85749 -11.76809 -10.82589 -10.71927 -10.58239 -10.08782 -9.50058 -8.34599 -6.40679 -0.95048 -0.26340 0.99118 1.11329 1.32770 1.38186 1.48875 1.56321 1.59219 2.22364 2.31666 2.39723 2.69267 2.82775 2.99359 3.10030 3.35855 3.51521 3.72265 3.78359 3.82929 4.03857 4.11223 4.32250 4.33687 4.39208 4.49416 4.56174 4.61544 4.64508 4.77684 4.86374 4.91093 4.93079 4.93193 5.07536 5.11460 5.21410 5.43654 5.51897 5.74865 5.77530 6.18556 6.22713 6.44792 6.54868 6.60767 7.14776 7.27903 8.82395 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.002247 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.036574 B =12458.165438 C =13293.790195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.290 6.290 4 C 0.315 3.685 5 C 0.050 3.950 6 N -0.379 5.379 7 C -0.031 4.031 8 C 0.533 3.467 9 O -0.505 6.505 10 O -0.326 6.326 11 C 0.075 3.925 12 H 0.118 0.882 13 C -0.160 4.160 14 C 0.501 3.499 15 O -0.575 6.575 16 N -0.596 5.596 17 C 0.065 3.935 18 C 0.224 3.776 19 C -0.541 4.541 20 H 0.026 0.974 21 C 0.009 3.991 22 N -0.945 5.945 23 Si 0.951 3.049 24 H -0.247 1.247 25 H -0.283 1.283 26 H -0.254 1.254 27 C 0.182 3.818 28 N -0.505 5.505 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.213 0.787 35 H 0.114 0.886 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.022 0.978 42 H 0.060 0.940 43 H 0.269 0.731 44 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.597 -15.871 18.225 29.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.193 6.193 4 C 0.131 3.869 5 C -0.119 4.119 6 N -0.096 5.096 7 C -0.166 4.166 8 C 0.376 3.624 9 O -0.393 6.393 10 O -0.240 6.240 11 C 0.017 3.983 12 H 0.136 0.864 13 C -0.217 4.217 14 C 0.287 3.713 15 O -0.454 6.454 16 N -0.328 5.328 17 C -0.076 4.076 18 C 0.102 3.898 19 C -0.579 4.579 20 H 0.045 0.955 21 C -0.189 4.189 22 N -0.585 5.585 23 Si 0.773 3.227 24 H -0.171 1.171 25 H -0.209 1.209 26 H -0.178 1.178 27 C 0.024 3.976 28 N -0.234 5.234 29 H 0.120 0.880 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.229 0.771 35 H 0.132 0.868 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.040 0.960 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -16.908 -15.514 17.869 29.084 hybrid contribution 0.301 0.539 -0.767 0.985 sum -16.608 -14.975 17.102 28.152 Atomic orbital electron populations 1.21863 0.90572 1.04550 1.03675 1.23100 0.96744 0.79080 1.03316 1.86293 1.14542 1.33282 1.85174 1.21519 0.85896 0.91635 0.87878 1.23542 0.90728 0.96435 1.01211 1.68490 1.04365 1.32916 1.03830 1.20744 0.91306 0.92305 1.12221 1.20647 0.88291 0.81205 0.72272 1.90823 1.60291 1.41238 1.46965 1.86773 1.24318 1.30224 1.82689 1.22691 0.78020 0.96783 1.00832 0.86406 1.22312 1.04396 1.04532 0.90502 1.20626 0.82996 0.87776 0.79860 1.90682 1.51085 1.50877 1.52797 1.47801 1.05406 1.23564 1.56052 1.22270 0.91555 0.92580 1.01182 1.19429 0.96198 0.83606 0.90554 1.21555 1.46993 0.97330 0.92038 0.95545 1.25903 0.94474 1.03680 0.94837 1.70059 1.49544 1.34956 1.03956 0.85668 0.80176 0.77958 0.78903 1.17136 1.20877 1.17797 1.23749 0.90455 0.96536 0.86879 1.68419 1.04605 1.32311 1.18101 0.88042 0.91197 0.91486 0.90991 0.90593 0.77066 0.86784 0.91256 0.89172 0.88683 0.89696 0.90614 0.95971 0.92189 0.92229 0.77273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 71.98 0.74 -0.19 16 2 C 0.05 0.56 6.04 71.98 0.43 0.99 16 3 O -0.29 -4.44 10.12 -87.72 -0.89 -5.32 16 4 C 0.32 5.85 7.51 84.92 0.64 6.48 16 5 C 0.05 1.01 11.18 85.09 0.95 1.97 16 6 N -0.38 -10.42 10.27 -183.97 -1.89 -12.30 16 7 C -0.03 -0.81 6.74 41.74 0.28 -0.53 16 8 C 0.53 16.31 7.92 70.35 0.56 16.87 16 9 O -0.50 -15.01 15.59 19.95 0.31 -14.70 16 10 O -0.33 -11.74 9.25 -49.91 -0.46 -12.20 16 11 C 0.07 2.45 2.17 29.85 0.06 2.52 16 12 H 0.12 3.60 6.16 -2.38 -0.01 3.59 16 13 C -0.16 -3.65 9.27 71.98 0.67 -2.98 16 14 C 0.50 21.71 7.10 87.66 0.62 22.33 16 15 O -0.58 -31.31 16.08 15.72 0.25 -31.05 16 16 N -0.60 -24.40 2.86 -851.11 -2.43 -26.83 16 17 C 0.07 1.80 8.92 127.77 1.14 2.94 16 18 C 0.22 10.95 4.23 85.63 0.36 11.31 16 19 C -0.54 -32.27 9.94 25.60 0.25 -32.01 16 20 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 21 C 0.01 0.54 5.47 84.65 0.46 1.00 16 22 N -0.95 -60.45 13.96 21.44 0.30 -60.15 16 23 Si 0.95 44.53 27.47 68.60 1.88 46.41 16 24 H -0.25 -10.46 7.11 99.48 0.71 -9.76 16 25 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 26 H -0.25 -11.45 6.54 99.48 0.65 -10.80 16 27 C 0.18 3.67 10.76 84.94 0.91 4.59 16 28 N -0.50 -9.65 9.37 -307.04 -2.88 -12.52 16 29 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.07 0.79 8.11 -2.39 -0.02 0.77 16 33 H 0.08 0.77 8.11 -2.39 -0.02 0.75 16 34 H 0.21 2.95 8.06 -2.91 -0.02 2.93 16 35 H 0.11 2.00 5.10 -2.39 -0.01 1.99 16 36 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.09 1.83 7.01 -2.39 -0.02 1.81 16 39 H 0.08 1.94 6.08 -2.39 -0.01 1.93 16 40 H 0.08 2.19 8.07 -2.38 -0.02 2.17 16 41 H 0.02 1.18 6.47 -2.39 -0.02 1.17 16 42 H 0.06 2.57 7.50 -2.39 -0.02 2.55 16 43 H 0.27 15.93 8.31 -92.70 -0.77 15.16 16 44 H 0.21 3.21 7.64 -2.91 -0.02 3.19 16 Total: -1.00 -85.52 378.63 3.27 -82.25 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.98 Total: 11.15 kcal Atomic # 6 Polarization: 27.18 SS G_CDS: 8.09 Total: 35.27 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -6.90 Total: -111.81 kcal Atomic # 8 Polarization: -62.49 SS G_CDS: -0.79 Total: -63.28 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.41 kcal Total: -85.52 3.27 -82.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778536983.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.413 kcal (2) G-P(sol) polarization free energy of solvation -85.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds