Wall clock time and date at job start Tue Mar 31 2020 22:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46972 * 2 1 4 4 C 1.35804 * 116.99818 * 180.02562 * 3 2 1 5 5 C 1.38839 * 119.92553 * 0.02562 * 4 3 2 6 6 C 1.37793 * 120.14227 * 179.97438 * 5 4 3 7 7 C 1.39697 * 120.01048 * 0.02562 * 6 5 4 8 8 C 1.47606 * 120.07197 * 179.97438 * 7 6 5 9 9 O 1.21592 * 119.99564 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00348 * 0.02562 * 8 7 6 11 11 N 1.40099 * 120.00009 * 179.97438 * 10 8 7 12 12 C 1.34784 * 119.99705 * 180.02562 * 11 10 8 13 13 O 1.21586 * 119.99730 * 180.02562 * 12 11 10 14 14 N 1.34779 * 119.99781 * 359.97438 * 12 11 10 15 15 C 1.46498 * 119.99361 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.46866 * 180.02562 * 15 14 12 17 17 H 1.08007 * 120.00139 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00277 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99841 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00360 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46642 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47205 * 119.99439 * 20 18 16 23 23 H 1.48504 * 109.46947 * 239.99857 * 20 18 16 24 24 C 1.39736 * 119.85430 * 359.73063 * 7 6 5 25 25 C 1.38139 * 119.84879 * 0.49633 * 24 7 6 26 26 O 1.36001 * 119.99904 * 179.79859 * 25 24 7 27 27 C 1.42903 * 117.00304 * 359.72690 * 26 25 24 28 28 H 1.09003 * 109.46766 * 299.99850 * 1 2 3 29 29 H 1.09007 * 109.47170 * 59.99418 * 1 2 3 30 30 H 1.08997 * 109.47390 * 179.97438 * 1 2 3 31 31 H 1.09010 * 109.46832 * 240.00565 * 2 1 3 32 32 H 1.08994 * 109.47205 * 120.00313 * 2 1 3 33 33 H 1.07992 * 119.92662 * 0.02562 * 5 4 3 34 34 H 1.08004 * 119.99178 * 180.02562 * 6 5 4 35 35 H 0.96999 * 119.99519 * 359.97438 * 10 8 7 36 36 H 0.96991 * 120.00281 * 359.97438 * 11 10 8 37 37 H 0.96995 * 120.00043 * 0.02562 * 14 12 11 38 38 H 1.09006 * 109.47198 * 299.99512 * 15 14 12 39 39 H 1.08994 * 109.47494 * 60.00166 * 15 14 12 40 40 H 0.96993 * 119.99958 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.07185 * 180.29856 * 24 7 6 42 42 H 1.09002 * 109.47382 * 179.97438 * 27 26 25 43 43 H 1.09001 * 109.46938 * 59.99841 * 27 26 25 44 44 H 1.09004 * 109.46926 * 299.99962 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3526 1.5252 -0.0005 5 6 4.1970 0.4231 -0.0016 6 6 5.5637 0.5984 -0.0027 7 6 6.1027 1.8872 -0.0022 8 6 7.5666 2.0766 -0.0028 9 8 8.0343 3.1990 -0.0019 10 7 8.3847 1.0056 -0.0043 11 7 9.7741 1.1855 -0.0054 12 6 10.5923 0.1144 -0.0075 13 8 11.7981 0.2705 -0.0080 14 7 10.0737 -1.1296 -0.0080 15 6 10.9631 -2.2938 -0.0097 16 6 10.1389 -3.5555 -0.0105 17 1 9.0604 -3.4961 -0.0095 18 6 10.7615 -4.7857 -0.0116 19 7 12.0747 -4.8581 -0.0124 20 14 9.7399 -6.3496 -0.0119 21 1 8.2970 -5.9982 -0.0103 22 1 10.0545 -7.1461 -1.2251 23 1 10.0561 -7.1476 1.1999 24 6 5.2531 2.9966 -0.0063 25 6 3.8839 2.8140 -0.0004 26 8 3.0541 3.8916 -0.0002 27 6 3.6671 5.1824 -0.0002 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.7816 -0.5738 -0.0024 34 1 6.2182 -0.2607 -0.0039 35 1 8.0115 0.1103 -0.0047 36 1 10.1473 2.0808 -0.0054 37 1 9.1118 -1.2541 -0.0072 38 1 11.5911 -2.2700 -0.9003 39 1 11.5927 -2.2713 0.8797 40 1 12.5127 -5.7235 -0.0135 41 1 5.6661 3.9945 -0.0108 42 1 2.8947 5.9515 -0.0005 43 1 4.2870 5.2903 -0.8903 44 1 4.2872 5.2902 0.8897 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787355819.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:48 Heat of formation + Delta-G solvation = -73.523115 kcal Electronic energy + Delta-G solvation = -28277.755637 eV Core-core repulsion = 24004.969128 eV Total energy + Delta-G solvation = -4272.786509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.15686 -40.17482 -39.03622 -38.83146 -36.97023 -35.53134 -34.35791 -32.51898 -32.33758 -31.27630 -30.82148 -29.52359 -27.58608 -27.14111 -24.56627 -23.78376 -23.03525 -22.02042 -21.14092 -20.50349 -19.46876 -18.76971 -18.19296 -17.17019 -16.69052 -16.68601 -16.49716 -15.85682 -15.75992 -15.50425 -15.20917 -15.03939 -14.70969 -14.62924 -14.56563 -14.15849 -13.65037 -13.51219 -13.29676 -13.16960 -12.87235 -12.46167 -12.35412 -12.18987 -12.08740 -11.77989 -11.46351 -11.44830 -11.22492 -11.10503 -11.03774 -10.94652 -10.50695 -10.32669 -9.76303 -9.46434 -9.21175 -8.86451 -8.43507 -8.22559 -7.87944 -6.23902 -4.31558 0.47981 0.91244 1.92462 2.51952 2.71346 2.88200 3.18286 3.24605 3.27533 3.43088 3.63394 3.68445 4.17527 4.27933 4.29574 4.48632 4.51099 4.60768 4.71388 4.78180 4.81975 4.88556 4.91799 5.12633 5.15632 5.20863 5.23901 5.30665 5.37729 5.50993 5.63491 5.75424 5.84259 6.11340 6.51366 6.63729 6.67608 7.14017 7.22940 7.32860 7.43986 7.44420 7.58277 7.86180 8.04052 8.60004 8.76294 9.02931 9.35146 10.86258 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.010074 B = 0.002742 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.902814 B =10208.852561 C =12956.701680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.301 6.301 4 C 0.133 3.867 5 C -0.180 4.180 6 C -0.076 4.076 7 C -0.126 4.126 8 C 0.563 3.437 9 O -0.539 6.539 10 N -0.517 5.517 11 N -0.541 5.541 12 C 0.701 3.299 13 O -0.576 6.576 14 N -0.725 5.725 15 C 0.263 3.737 16 C -0.545 4.545 17 H 0.063 0.937 18 C 0.065 3.935 19 N -0.883 5.883 20 Si 0.905 3.095 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.110 4.110 25 C 0.090 3.910 26 O -0.305 6.305 27 C 0.023 3.977 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.145 0.855 34 H 0.135 0.865 35 H 0.421 0.579 36 H 0.436 0.564 37 H 0.380 0.620 38 H 0.029 0.971 39 H 0.029 0.971 40 H 0.266 0.734 41 H 0.151 0.849 42 H 0.102 0.898 43 H 0.058 0.942 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.466 12.964 0.020 27.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.214 6.214 4 C 0.086 3.914 5 C -0.198 4.198 6 C -0.095 4.095 7 C -0.131 4.131 8 C 0.351 3.649 9 O -0.416 6.416 10 N -0.268 5.268 11 N -0.300 5.300 12 C 0.401 3.599 13 O -0.450 6.450 14 N -0.379 5.379 15 C 0.143 3.857 16 C -0.583 4.583 17 H 0.081 0.919 18 C -0.140 4.140 19 N -0.520 5.520 20 Si 0.732 3.268 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.129 4.129 25 C 0.045 3.955 26 O -0.218 6.218 27 C -0.072 4.072 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.163 0.837 34 H 0.153 0.847 35 H 0.264 0.736 36 H 0.281 0.719 37 H 0.213 0.787 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.169 0.831 42 H 0.120 0.880 43 H 0.076 0.924 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.398 13.637 0.020 27.082 hybrid contribution -0.619 -1.208 -0.001 1.357 sum -24.017 12.429 0.020 27.042 Atomic orbital electron populations 1.21769 0.92498 1.02972 1.03638 1.22910 0.96208 0.81657 1.01814 1.86151 1.17844 1.29461 1.87975 1.18472 0.83358 0.91086 0.98512 1.21027 0.93488 0.97978 1.07329 1.21068 0.94983 0.95985 0.97485 1.19260 0.91418 0.93763 1.08648 1.18076 0.85831 0.83828 0.77196 1.90795 1.76852 1.23164 1.50812 1.44716 0.96221 1.10076 1.75784 1.44822 0.91941 1.10265 1.82995 1.15999 0.84582 0.80549 0.78793 1.90991 1.11192 1.83593 1.59244 1.45802 1.10206 1.04941 1.76941 1.19114 0.89111 0.79425 0.98095 1.21195 0.93125 0.90354 1.53642 0.91889 1.24945 0.95055 0.99329 0.94624 1.69979 1.07927 1.25516 1.48540 0.86345 0.80018 0.82600 0.77817 1.19651 1.20763 1.20768 1.21088 0.90352 1.00274 1.01226 1.18037 0.88581 0.85734 1.03182 1.86182 1.33483 1.13058 1.89107 1.23140 1.00049 0.82253 1.01763 0.91449 0.91453 0.90199 0.91597 0.91595 0.83705 0.84740 0.73606 0.71903 0.78708 0.95269 0.95264 0.92375 0.83122 0.88002 0.92361 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.28 37.16 0.38 -0.37 16 2 C 0.05 0.31 5.46 37.16 0.20 0.51 16 3 O -0.30 -2.95 9.91 -33.79 -0.33 -3.28 16 4 C 0.13 1.33 6.71 -38.93 -0.26 1.07 16 5 C -0.18 -1.52 9.01 -39.52 -0.36 -1.87 16 6 C -0.08 -0.68 9.53 -39.20 -0.37 -1.06 16 7 C -0.13 -1.38 5.87 -104.97 -0.62 -2.00 16 8 C 0.56 7.47 7.88 -12.44 -0.10 7.37 16 9 O -0.54 -8.61 16.18 5.28 0.09 -8.52 16 10 N -0.52 -6.80 6.21 30.47 0.19 -6.61 16 11 N -0.54 -8.79 6.26 27.64 0.17 -8.62 16 12 C 0.70 14.23 8.68 -86.91 -0.75 13.47 16 13 O -0.58 -14.09 17.18 5.29 0.09 -14.00 16 14 N -0.72 -14.64 5.51 -66.41 -0.37 -15.01 16 15 C 0.26 6.71 5.43 -5.19 -0.03 6.68 16 16 C -0.54 -14.03 9.28 -34.44 -0.32 -14.35 16 17 H 0.06 1.48 7.60 -52.48 -0.40 1.09 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.88 -25.20 13.29 55.43 0.74 -24.46 16 20 Si 0.91 19.94 29.54 -169.99 -5.02 14.92 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 C -0.11 -1.16 8.58 -39.06 -0.33 -1.50 16 25 C 0.09 0.96 6.69 -39.19 -0.26 0.70 16 26 O -0.30 -3.16 10.28 -34.41 -0.35 -3.51 16 27 C 0.02 0.15 9.81 101.05 0.99 1.15 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.35 7.65 -51.92 -0.40 -0.05 16 32 H 0.07 0.35 7.66 -51.93 -0.40 -0.05 16 33 H 0.15 0.87 6.27 -52.49 -0.33 0.54 16 34 H 0.13 0.93 6.39 -52.48 -0.34 0.60 16 35 H 0.42 4.62 4.72 -182.60 -0.86 3.76 16 36 H 0.44 6.96 8.10 -182.61 -1.48 5.48 16 37 H 0.38 6.30 6.24 -40.82 -0.25 6.05 16 38 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.15 1.51 5.87 -52.49 -0.31 1.20 16 42 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 44 H 0.06 0.36 7.67 -51.93 -0.40 -0.04 16 LS Contribution 377.30 15.07 5.69 5.69 Total: -1.00 -34.77 377.30 -8.27 -43.04 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -7.23 Total: 8.93 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: -1.93 Total: 11.44 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.73 Total: -54.70 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.51 Total: -29.32 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.77 -8.27 -43.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787355819.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.488 kcal (2) G-P(sol) polarization free energy of solvation -34.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds