Wall clock time and date at job start Tue Mar 31 2020 22:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46972 * 2 1 4 4 C 1.35804 * 116.99818 * 180.02562 * 3 2 1 5 5 C 1.38839 * 119.92553 * 0.02562 * 4 3 2 6 6 C 1.37793 * 120.14227 * 179.97438 * 5 4 3 7 7 C 1.39697 * 120.01048 * 0.02562 * 6 5 4 8 8 C 1.47606 * 120.07197 * 179.97438 * 7 6 5 9 9 O 1.21592 * 119.99564 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00348 * 0.02562 * 8 7 6 11 11 N 1.40099 * 120.00009 * 179.97438 * 10 8 7 12 12 C 1.34784 * 119.99705 * 180.02562 * 11 10 8 13 13 O 1.21586 * 119.99730 * 180.02562 * 12 11 10 14 14 N 1.34779 * 119.99781 * 359.97438 * 12 11 10 15 15 C 1.46498 * 119.99361 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.46866 * 180.02562 * 15 14 12 17 17 H 1.08007 * 120.00139 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00277 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99841 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00360 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46642 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47205 * 119.99439 * 20 18 16 23 23 H 1.48504 * 109.46947 * 239.99857 * 20 18 16 24 24 C 1.39736 * 119.85430 * 359.73063 * 7 6 5 25 25 C 1.38139 * 119.84879 * 0.49633 * 24 7 6 26 26 O 1.36001 * 119.99904 * 179.79859 * 25 24 7 27 27 C 1.42903 * 117.00304 * 359.72690 * 26 25 24 28 28 H 1.09003 * 109.46766 * 299.99850 * 1 2 3 29 29 H 1.09007 * 109.47170 * 59.99418 * 1 2 3 30 30 H 1.08997 * 109.47390 * 179.97438 * 1 2 3 31 31 H 1.09010 * 109.46832 * 240.00565 * 2 1 3 32 32 H 1.08994 * 109.47205 * 120.00313 * 2 1 3 33 33 H 1.07992 * 119.92662 * 0.02562 * 5 4 3 34 34 H 1.08004 * 119.99178 * 180.02562 * 6 5 4 35 35 H 0.96999 * 119.99519 * 359.97438 * 10 8 7 36 36 H 0.96991 * 120.00281 * 359.97438 * 11 10 8 37 37 H 0.96995 * 120.00043 * 0.02562 * 14 12 11 38 38 H 1.09006 * 109.47198 * 299.99512 * 15 14 12 39 39 H 1.08994 * 109.47494 * 60.00166 * 15 14 12 40 40 H 0.96993 * 119.99958 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.07185 * 180.29856 * 24 7 6 42 42 H 1.09002 * 109.47382 * 179.97438 * 27 26 25 43 43 H 1.09001 * 109.46938 * 59.99841 * 27 26 25 44 44 H 1.09004 * 109.46926 * 299.99962 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3526 1.5252 -0.0005 5 6 4.1970 0.4231 -0.0016 6 6 5.5637 0.5984 -0.0027 7 6 6.1027 1.8872 -0.0022 8 6 7.5666 2.0766 -0.0028 9 8 8.0343 3.1990 -0.0019 10 7 8.3847 1.0056 -0.0043 11 7 9.7741 1.1855 -0.0054 12 6 10.5923 0.1144 -0.0075 13 8 11.7981 0.2705 -0.0080 14 7 10.0737 -1.1296 -0.0080 15 6 10.9631 -2.2938 -0.0097 16 6 10.1389 -3.5555 -0.0105 17 1 9.0604 -3.4961 -0.0095 18 6 10.7615 -4.7857 -0.0116 19 7 12.0747 -4.8581 -0.0124 20 14 9.7399 -6.3496 -0.0119 21 1 8.2970 -5.9982 -0.0103 22 1 10.0545 -7.1461 -1.2251 23 1 10.0561 -7.1476 1.1999 24 6 5.2531 2.9966 -0.0063 25 6 3.8839 2.8140 -0.0004 26 8 3.0541 3.8916 -0.0002 27 6 3.6671 5.1824 -0.0002 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.7816 -0.5738 -0.0024 34 1 6.2182 -0.2607 -0.0039 35 1 8.0115 0.1103 -0.0047 36 1 10.1473 2.0808 -0.0054 37 1 9.1118 -1.2541 -0.0072 38 1 11.5911 -2.2700 -0.9003 39 1 11.5927 -2.2713 0.8797 40 1 12.5127 -5.7235 -0.0135 41 1 5.6661 3.9945 -0.0108 42 1 2.8947 5.9515 -0.0005 43 1 4.2870 5.2903 -0.8903 44 1 4.2872 5.2902 0.8897 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787355819.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:45 Heat of formation + Delta-G solvation = -99.503009 kcal Electronic energy + Delta-G solvation = -28278.882209 eV Core-core repulsion = 24004.969128 eV Total energy + Delta-G solvation = -4273.913081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.01670 -41.38503 -40.32271 -39.58670 -37.75906 -36.90791 -36.23882 -34.28186 -33.16560 -32.28951 -31.54951 -30.38013 -29.14508 -28.16366 -25.27429 -24.93371 -24.50559 -22.76318 -22.14155 -22.04542 -20.75270 -19.76336 -19.13204 -18.46214 -17.88352 -17.52717 -17.30256 -17.11582 -16.92051 -16.69577 -16.43721 -16.23235 -15.97032 -15.87746 -15.49890 -15.28172 -14.98152 -14.24873 -14.13911 -14.13221 -14.04934 -13.88426 -13.28733 -13.05413 -12.92742 -12.87051 -12.76549 -12.56477 -12.40730 -12.20430 -12.08807 -12.00960 -11.75367 -11.64161 -11.41954 -11.33349 -10.81647 -10.11813 -9.93076 -9.44162 -8.96439 -8.25264 -6.41568 -0.34015 0.20547 0.67495 1.48719 1.49577 1.53624 1.62521 2.01679 2.08245 2.12696 2.26078 2.44904 2.65354 3.11015 3.19430 3.65115 3.82957 3.94762 3.98594 4.07977 4.11987 4.20764 4.35644 4.37636 4.42964 4.58536 4.70404 4.78379 4.87543 4.98303 4.99068 5.02875 5.09582 5.27522 5.28422 5.30372 5.39871 5.42464 5.47540 5.79375 5.91086 6.02124 6.18601 6.48176 6.62867 6.72853 7.20346 7.28167 7.43936 8.87120 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.010074 B = 0.002742 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.902814 B =10208.852561 C =12956.701680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.039 3.961 3 O -0.319 6.319 4 C 0.128 3.872 5 C -0.174 4.174 6 C -0.068 4.068 7 C -0.141 4.141 8 C 0.569 3.431 9 O -0.569 6.569 10 N -0.509 5.509 11 N -0.529 5.529 12 C 0.705 3.295 13 O -0.623 6.623 14 N -0.713 5.713 15 C 0.280 3.720 16 C -0.551 4.551 17 H 0.091 0.909 18 C 0.004 3.996 19 N -0.931 5.931 20 Si 0.984 3.016 21 H -0.246 1.246 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.113 4.113 25 C 0.075 3.925 26 O -0.323 6.323 27 C 0.017 3.983 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.174 0.826 34 H 0.159 0.841 35 H 0.432 0.568 36 H 0.440 0.560 37 H 0.401 0.599 38 H -0.007 1.007 39 H -0.007 1.007 40 H 0.268 0.732 41 H 0.149 0.851 42 H 0.123 0.877 43 H 0.061 0.939 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.718 11.552 0.021 30.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.035 4.035 3 O -0.233 6.233 4 C 0.081 3.919 5 C -0.192 4.192 6 C -0.087 4.087 7 C -0.146 4.146 8 C 0.358 3.642 9 O -0.448 6.448 10 N -0.261 5.261 11 N -0.285 5.285 12 C 0.404 3.596 13 O -0.501 6.501 14 N -0.369 5.369 15 C 0.157 3.843 16 C -0.589 4.589 17 H 0.109 0.891 18 C -0.196 4.196 19 N -0.570 5.570 20 Si 0.808 3.192 21 H -0.169 1.169 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.133 4.133 25 C 0.030 3.970 26 O -0.237 6.237 27 C -0.078 4.078 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.192 0.808 34 H 0.176 0.824 35 H 0.278 0.722 36 H 0.285 0.715 37 H 0.238 0.762 38 H 0.011 0.989 39 H 0.011 0.989 40 H 0.077 0.923 41 H 0.167 0.833 42 H 0.141 0.859 43 H 0.080 0.920 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -26.741 12.264 0.021 29.419 hybrid contribution 0.281 -0.659 -0.001 0.717 sum -26.459 11.605 0.020 28.892 Atomic orbital electron populations 1.21805 0.91789 1.04133 1.03049 1.23224 0.96877 0.80348 1.03095 1.86145 1.17687 1.31711 1.87747 1.18742 0.83923 0.91356 0.97874 1.21323 0.92978 0.98814 1.06102 1.21332 0.95663 0.95719 0.95969 1.19102 0.89551 0.94951 1.10967 1.18476 0.86627 0.83131 0.75917 1.90784 1.77504 1.24362 1.52108 1.44739 0.94258 1.10977 1.76172 1.44397 0.93546 1.09165 1.81434 1.15944 0.84209 0.81035 0.78403 1.90960 1.13589 1.84486 1.61025 1.45307 1.10725 1.03771 1.77072 1.18595 0.89341 0.81674 0.94707 1.21611 0.94438 0.90093 1.52778 0.89071 1.26049 0.96141 1.03443 0.93949 1.70147 1.10295 1.26540 1.49973 0.85114 0.79408 0.77368 0.77337 1.16864 1.20912 1.20923 1.21089 0.90521 1.00302 1.01378 1.18214 0.88591 0.86393 1.03817 1.86156 1.34292 1.14029 1.89204 1.23357 1.00936 0.81403 1.02068 0.92052 0.92056 0.88133 0.90233 0.90234 0.80830 0.82367 0.72225 0.71463 0.76231 0.98943 0.98937 0.92328 0.83324 0.85932 0.92048 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 71.98 0.74 -0.44 16 2 C 0.04 0.38 5.46 71.98 0.39 0.77 16 3 O -0.32 -5.68 9.91 -77.34 -0.77 -6.45 16 4 C 0.13 2.34 6.71 22.69 0.15 2.49 16 5 C -0.17 -2.37 9.01 22.31 0.20 -2.17 16 6 C -0.07 -1.01 9.53 22.52 0.21 -0.79 16 7 C -0.14 -2.85 5.87 -20.09 -0.12 -2.97 16 8 C 0.57 14.37 7.88 86.72 0.68 15.05 16 9 O -0.57 -17.91 16.18 -4.01 -0.06 -17.97 16 10 N -0.51 -12.48 6.21 -175.76 -1.09 -13.57 16 11 N -0.53 -16.84 6.26 -184.74 -1.16 -18.00 16 12 C 0.70 28.67 8.68 179.05 1.55 30.23 16 13 O -0.62 -31.39 17.18 -3.99 -0.07 -31.46 16 14 N -0.71 -28.41 5.51 -482.29 -2.66 -31.07 16 15 C 0.28 14.53 5.43 85.63 0.46 15.00 16 16 C -0.55 -27.77 9.28 25.60 0.24 -27.53 16 17 H 0.09 3.98 7.60 -2.91 -0.02 3.96 16 18 C 0.00 0.20 5.46 84.65 0.46 0.67 16 19 N -0.93 -54.05 13.29 21.45 0.28 -53.76 16 20 Si 0.98 39.63 29.54 68.60 2.03 41.66 16 21 H -0.25 -8.78 7.11 99.48 0.71 -8.07 16 22 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 24 C -0.11 -2.31 8.58 22.61 0.19 -2.12 16 25 C 0.08 1.54 6.69 22.52 0.15 1.69 16 26 O -0.32 -6.51 10.28 -79.55 -0.82 -7.33 16 27 C 0.02 0.21 9.81 113.37 1.11 1.33 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.08 0.57 7.65 -2.38 -0.02 0.55 16 32 H 0.08 0.57 7.66 -2.39 -0.02 0.55 16 33 H 0.17 1.30 6.27 -2.91 -0.02 1.28 16 34 H 0.16 1.52 6.39 -2.91 -0.02 1.50 16 35 H 0.43 8.28 4.72 -213.32 -1.01 7.28 16 36 H 0.44 13.94 8.10 -213.33 -1.73 12.21 16 37 H 0.40 12.38 6.24 -92.71 -0.58 11.80 16 38 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 39 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 40 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 41 H 0.15 2.98 5.87 -2.91 -0.02 2.96 16 42 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.06 0.74 7.65 -2.39 -0.02 0.72 16 44 H 0.06 0.74 7.67 -2.38 -0.02 0.72 16 Total: -1.00 -77.34 377.30 -0.10 -77.44 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: -2.23 Total: 29.31 kcal Atomic # 6 Polarization: 24.76 SS G_CDS: 6.44 Total: 31.20 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -4.62 Total: -116.40 kcal Atomic # 8 Polarization: -61.49 SS G_CDS: -1.72 Total: -63.21 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Total: -77.34 -0.10 -77.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787355819.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.064 kcal (2) G-P(sol) polarization free energy of solvation -77.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds