Wall clock time and date at job start Tue Mar 31 2020 22:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46504 * 109.46542 * 2 1 4 4 C 1.46496 * 120.00129 * 269.99472 * 3 2 1 5 5 C 1.50701 * 109.47749 * 270.00550 * 4 3 2 6 6 H 1.08002 * 119.99673 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00302 * 179.97438 * 5 4 3 8 8 N 1.31524 * 120.00124 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00128 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47067 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46837 * 120.00691 * 9 7 5 12 12 H 1.48501 * 109.46994 * 240.00346 * 9 7 5 13 13 C 1.34771 * 119.99589 * 90.00542 * 3 2 1 14 14 O 1.21285 * 119.99975 * 179.97438 * 13 3 2 15 15 C 1.50696 * 120.00564 * 359.97438 * 13 3 2 16 16 O 1.45198 * 109.47599 * 180.02562 * 15 13 3 17 17 C 1.34231 * 117.00416 * 179.97438 * 16 15 13 18 18 O 1.20831 * 119.99563 * 0.02562 * 17 16 15 19 19 C 1.50694 * 120.00102 * 180.02562 * 17 16 15 20 20 C 1.53002 * 109.47008 * 180.02562 * 19 17 16 21 21 N 1.46500 * 109.47266 * 180.02562 * 20 19 17 22 22 C 1.34743 * 120.04634 * 89.99227 * 21 20 19 23 23 N 1.30645 * 121.49165 * 179.74620 * 22 21 20 24 24 C 1.33516 * 121.50417 * 0.26069 * 23 22 21 25 25 C 1.36191 * 119.91272 * 359.97438 * 24 23 22 26 26 C 1.35028 * 120.03780 * 270.25672 * 21 20 19 27 27 O 1.21977 * 120.70946 * 359.97438 * 26 21 20 28 28 H 1.08998 * 109.47074 * 299.99995 * 1 2 3 29 29 H 1.09002 * 109.47168 * 60.00013 * 1 2 3 30 30 H 1.08997 * 109.46404 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47180 * 240.00535 * 2 1 3 32 32 H 1.08994 * 109.47460 * 119.99798 * 2 1 3 33 33 H 1.08998 * 109.47035 * 30.01093 * 4 3 2 34 34 H 1.09003 * 109.47338 * 150.00242 * 4 3 2 35 35 H 0.96994 * 119.99775 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.46960 * 60.00169 * 15 13 3 37 37 H 1.09001 * 109.47158 * 300.00503 * 15 13 3 38 38 H 1.08997 * 109.47303 * 60.00491 * 19 17 16 39 39 H 1.08999 * 109.47487 * 300.00209 * 19 17 16 40 40 H 1.08995 * 109.47679 * 60.00034 * 20 19 17 41 41 H 1.09009 * 109.46773 * 299.99708 * 20 19 17 42 42 H 1.08002 * 119.25583 * 0.03270 * 22 21 20 43 43 H 1.08007 * 120.04439 * 179.97438 * 24 23 22 44 44 H 1.08009 * 120.70566 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8352 -1.7038 6 1 4.3427 1.2304 -1.0962 7 6 4.1490 2.3899 -2.8779 8 7 3.3490 3.1260 -3.6181 9 14 5.9135 2.0970 -3.4169 10 1 6.6012 1.2419 -2.4164 11 1 5.9214 1.4176 -4.7372 12 1 6.6203 3.3985 -3.5256 13 6 2.2429 2.0165 1.1672 14 8 2.6475 3.1599 1.1673 15 6 1.9914 1.3063 2.4723 16 8 2.3054 2.1960 3.5760 17 6 2.1336 1.7126 4.8164 18 8 1.7343 0.5832 4.9746 19 6 2.4385 2.5784 6.0114 20 6 2.1605 1.7928 7.2946 21 7 2.4563 2.6348 8.4564 22 6 1.4926 3.4104 8.9905 23 7 1.7239 4.1682 10.0292 24 6 2.9271 4.2128 10.6062 25 6 3.9459 3.4562 10.1118 26 6 3.6966 2.6385 8.9902 27 8 4.5810 1.9453 8.5157 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.5817 1.6879 -2.0283 34 1 2.0954 3.1412 -1.1384 35 1 3.6750 3.5164 -4.4439 36 1 2.6214 0.4187 2.5301 37 1 0.9433 1.0124 2.5299 38 1 1.8088 3.4678 5.9859 39 1 3.4871 2.8749 5.9873 40 1 2.7903 0.9037 7.3200 41 1 1.1118 1.4962 7.3189 42 1 0.5053 3.4020 8.5527 43 1 3.0923 4.8481 11.4639 44 1 4.9242 3.4821 10.5688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796337218.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:39 Heat of formation + Delta-G solvation = -105.613914 kcal Electronic energy + Delta-G solvation = -28235.932394 eV Core-core repulsion = 23961.754324 eV Total energy + Delta-G solvation = -4274.178070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.29003 -40.73878 -39.05482 -38.04116 -36.85091 -36.06791 -35.36457 -32.88379 -32.11896 -31.44726 -30.23125 -29.26079 -26.91375 -26.06333 -24.91104 -23.53714 -23.12208 -22.59340 -21.00566 -18.85975 -18.76780 -18.47179 -17.72783 -17.15263 -17.00206 -16.83060 -16.46297 -16.28283 -15.82612 -15.30337 -15.11058 -14.92157 -14.82538 -14.30413 -14.11215 -13.60223 -13.50833 -13.48332 -13.32295 -13.23306 -12.90624 -12.53942 -12.19616 -12.10623 -11.90270 -11.68616 -11.28270 -11.12338 -10.99636 -10.92308 -10.79173 -10.68388 -10.62820 -10.58313 -10.49694 -10.18090 -9.68090 -9.07069 -8.99367 -8.48181 -7.80779 -6.09242 -4.14121 0.12068 1.39402 1.75222 1.92117 2.41152 3.14435 3.18266 3.27700 3.35756 3.40072 3.57300 3.76623 3.98855 4.08317 4.11265 4.33895 4.40819 4.58229 4.71020 4.79040 4.81974 5.02243 5.06184 5.12197 5.17036 5.22305 5.25637 5.30728 5.32580 5.52965 5.67497 5.82533 5.93775 6.08832 6.14241 6.19947 6.39369 6.94152 7.25272 7.34684 7.36722 7.40864 7.49130 7.86861 8.16409 8.23866 8.79456 8.94659 9.51202 10.98951 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.017074 B = 0.002071 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.517755 B =13519.545734 C =14364.670148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.247 3.753 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.506 3.494 14 O -0.519 6.519 15 C 0.050 3.950 16 O -0.326 6.326 17 C 0.471 3.529 18 O -0.511 6.511 19 C -0.131 4.131 20 C 0.100 3.900 21 N -0.521 5.521 22 C 0.376 3.624 23 N -0.543 5.543 24 C 0.150 3.850 25 C -0.286 4.286 26 C 0.514 3.486 27 O -0.530 6.530 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.263 0.737 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.111 0.889 42 H 0.206 0.794 43 H 0.167 0.833 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.299 -2.630 25.311 26.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.290 3.710 14 O -0.395 6.395 15 C -0.027 4.027 16 O -0.240 6.240 17 C 0.313 3.687 18 O -0.400 6.400 19 C -0.169 4.169 20 C -0.022 4.022 21 N -0.239 5.239 22 C 0.092 3.908 23 N -0.265 5.265 24 C 0.012 3.988 25 C -0.311 4.311 26 C 0.313 3.687 27 O -0.407 6.407 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.129 0.871 42 H 0.223 0.777 43 H 0.185 0.815 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.087 -2.194 25.242 26.596 hybrid contribution 1.548 -0.746 -0.765 1.882 sum -6.539 -2.941 24.477 25.505 Atomic orbital electron populations 1.22232 0.96491 1.01718 1.02402 1.21521 0.93771 0.83923 1.03088 1.48216 1.63733 1.13408 1.07127 1.19344 0.96535 0.93704 0.77524 1.21457 0.96836 1.32056 1.06340 0.92335 1.24939 0.97962 0.94855 0.96356 1.69940 1.35637 1.33364 1.14341 0.86426 0.84488 0.78110 0.78311 1.19783 1.20933 1.20819 1.19695 0.79811 0.87171 0.84294 1.90725 1.44484 1.17526 1.86722 1.23022 1.02811 0.92628 0.84276 1.86554 1.78215 1.44985 1.14245 1.23173 0.74226 0.86556 0.84722 1.90691 1.42716 1.19774 1.86795 1.21610 1.06925 0.99217 0.89173 1.21832 1.04950 0.93976 0.81434 1.46891 1.12317 1.36934 1.27748 1.25165 0.94271 0.83091 0.88247 1.68432 1.23577 1.23437 1.11066 1.22703 0.86966 0.92926 0.96250 1.22994 1.03505 1.03986 1.00591 1.17420 0.81327 0.84514 0.85417 1.91005 1.42663 1.43373 1.63643 0.93161 0.91761 0.91864 0.89365 0.91743 0.94580 0.93695 0.92701 0.88485 0.88547 0.86638 0.86436 0.86632 0.87088 0.77733 0.81538 0.82620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.10 1.54 5.93 -4.04 -0.02 1.51 16 3 N -0.59 -12.08 2.46 -175.06 -0.43 -12.51 16 4 C 0.25 6.30 5.16 -5.20 -0.03 6.27 16 5 C -0.53 -14.75 9.39 -34.44 -0.32 -15.08 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 9 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.51 10.39 7.75 -10.99 -0.09 10.31 16 14 O -0.52 -13.10 16.08 -14.11 -0.23 -13.33 16 15 C 0.05 0.76 4.50 36.00 0.16 0.92 16 16 O -0.33 -4.98 9.75 -45.91 -0.45 -5.42 16 17 C 0.47 5.59 7.96 36.00 0.29 5.88 16 18 O -0.51 -6.68 15.73 -18.75 -0.30 -6.97 16 19 C -0.13 -1.05 6.13 -27.89 -0.17 -1.22 16 20 C 0.10 0.68 4.66 -4.04 -0.02 0.66 16 21 N -0.52 -3.63 2.57 -121.10 -0.31 -3.94 16 22 C 0.38 1.78 11.48 -90.53 -1.04 0.74 16 23 N -0.54 -3.45 10.39 -14.48 -0.15 -3.60 16 24 C 0.15 0.89 11.20 -17.56 -0.20 0.69 16 25 C -0.29 -2.21 10.07 -39.26 -0.40 -2.60 16 26 C 0.51 5.21 7.45 -15.09 -0.11 5.10 16 27 O -0.53 -7.53 16.79 4.94 0.08 -7.44 16 28 H 0.05 0.59 7.22 -51.93 -0.37 0.22 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 32 H 0.06 0.82 6.44 -51.93 -0.33 0.48 16 33 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.05 1.29 7.42 -51.93 -0.39 0.91 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.10 1.35 7.39 -51.93 -0.38 0.97 16 37 H 0.10 1.23 7.18 -51.93 -0.37 0.86 16 38 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.12 1.04 7.42 -51.93 -0.39 0.66 16 41 H 0.11 0.45 7.97 -51.92 -0.41 0.03 16 42 H 0.21 0.09 8.03 -52.49 -0.42 -0.33 16 43 H 0.17 0.51 8.06 -52.48 -0.42 0.09 16 44 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 385.31 15.07 5.81 5.81 Total: -1.00 -38.38 385.31 -7.91 -46.29 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -5.99 Total: -3.18 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: -1.66 Total: 13.06 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: -0.16 Total: -45.55 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.89 Total: -33.17 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.38 -7.91 -46.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796337218.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.324 kcal (2) G-P(sol) polarization free energy of solvation -38.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds