Wall clock time and date at job start Tue Mar 31 2020 22:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46504 * 109.46542 * 2 1 4 4 C 1.46496 * 120.00129 * 269.99472 * 3 2 1 5 5 C 1.50701 * 109.47749 * 270.00550 * 4 3 2 6 6 H 1.08002 * 119.99673 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00302 * 179.97438 * 5 4 3 8 8 N 1.31524 * 120.00124 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00128 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47067 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46837 * 120.00691 * 9 7 5 12 12 H 1.48501 * 109.46994 * 240.00346 * 9 7 5 13 13 C 1.34771 * 119.99589 * 90.00542 * 3 2 1 14 14 O 1.21285 * 119.99975 * 179.97438 * 13 3 2 15 15 C 1.50696 * 120.00564 * 359.97438 * 13 3 2 16 16 O 1.45198 * 109.47599 * 180.02562 * 15 13 3 17 17 C 1.34231 * 117.00416 * 179.97438 * 16 15 13 18 18 O 1.20831 * 119.99563 * 0.02562 * 17 16 15 19 19 C 1.50694 * 120.00102 * 180.02562 * 17 16 15 20 20 C 1.53002 * 109.47008 * 180.02562 * 19 17 16 21 21 N 1.46500 * 109.47266 * 180.02562 * 20 19 17 22 22 C 1.34743 * 120.04634 * 89.99227 * 21 20 19 23 23 N 1.30645 * 121.49165 * 179.74620 * 22 21 20 24 24 C 1.33516 * 121.50417 * 0.26069 * 23 22 21 25 25 C 1.36191 * 119.91272 * 359.97438 * 24 23 22 26 26 C 1.35028 * 120.03780 * 270.25672 * 21 20 19 27 27 O 1.21977 * 120.70946 * 359.97438 * 26 21 20 28 28 H 1.08998 * 109.47074 * 299.99995 * 1 2 3 29 29 H 1.09002 * 109.47168 * 60.00013 * 1 2 3 30 30 H 1.08997 * 109.46404 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47180 * 240.00535 * 2 1 3 32 32 H 1.08994 * 109.47460 * 119.99798 * 2 1 3 33 33 H 1.08998 * 109.47035 * 30.01093 * 4 3 2 34 34 H 1.09003 * 109.47338 * 150.00242 * 4 3 2 35 35 H 0.96994 * 119.99775 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.46960 * 60.00169 * 15 13 3 37 37 H 1.09001 * 109.47158 * 300.00503 * 15 13 3 38 38 H 1.08997 * 109.47303 * 60.00491 * 19 17 16 39 39 H 1.08999 * 109.47487 * 300.00209 * 19 17 16 40 40 H 1.08995 * 109.47679 * 60.00034 * 20 19 17 41 41 H 1.09009 * 109.46773 * 299.99708 * 20 19 17 42 42 H 1.08002 * 119.25583 * 0.03270 * 22 21 20 43 43 H 1.08007 * 120.04439 * 179.97438 * 24 23 22 44 44 H 1.08009 * 120.70566 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8352 -1.7038 6 1 4.3427 1.2304 -1.0962 7 6 4.1490 2.3899 -2.8779 8 7 3.3490 3.1260 -3.6181 9 14 5.9135 2.0970 -3.4169 10 1 6.6012 1.2419 -2.4164 11 1 5.9214 1.4176 -4.7372 12 1 6.6203 3.3985 -3.5256 13 6 2.2429 2.0165 1.1672 14 8 2.6475 3.1599 1.1673 15 6 1.9914 1.3063 2.4723 16 8 2.3054 2.1960 3.5760 17 6 2.1336 1.7126 4.8164 18 8 1.7343 0.5832 4.9746 19 6 2.4385 2.5784 6.0114 20 6 2.1605 1.7928 7.2946 21 7 2.4563 2.6348 8.4564 22 6 1.4926 3.4104 8.9905 23 7 1.7239 4.1682 10.0292 24 6 2.9271 4.2128 10.6062 25 6 3.9459 3.4562 10.1118 26 6 3.6966 2.6385 8.9902 27 8 4.5810 1.9453 8.5157 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.5817 1.6879 -2.0283 34 1 2.0954 3.1412 -1.1384 35 1 3.6750 3.5164 -4.4439 36 1 2.6214 0.4187 2.5301 37 1 0.9433 1.0124 2.5299 38 1 1.8088 3.4678 5.9859 39 1 3.4871 2.8749 5.9873 40 1 2.7903 0.9037 7.3200 41 1 1.1118 1.4962 7.3189 42 1 0.5053 3.4020 8.5527 43 1 3.0923 4.8481 11.4639 44 1 4.9242 3.4821 10.5688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796337218.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:38 Heat of formation + Delta-G solvation = -130.333962 kcal Electronic energy + Delta-G solvation = -28237.004336 eV Core-core repulsion = 23961.754324 eV Total energy + Delta-G solvation = -4275.250012 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -42.87594 -41.80266 -40.58859 -38.73455 -37.88086 -37.01535 -36.73141 -34.95376 -32.81529 -32.00934 -31.73535 -30.62631 -28.51820 -26.91562 -25.48063 -24.91338 -24.27385 -23.88032 -21.92955 -20.29149 -19.43020 -19.28679 -18.68325 -18.39451 -18.15553 -17.95155 -17.81893 -17.21784 -17.11945 -16.62602 -16.38745 -15.94770 -15.48345 -15.38946 -15.24628 -14.82405 -14.61345 -14.44024 -14.24131 -14.06444 -13.91987 -13.82923 -13.59887 -13.52149 -13.29162 -13.07494 -12.70780 -12.52179 -12.50280 -12.24235 -12.06913 -11.87173 -11.79538 -11.70797 -11.55198 -11.32124 -11.05275 -10.74470 -10.66694 -9.61868 -9.55466 -8.25283 -6.39401 -0.34436 0.78780 0.97859 1.03479 1.35021 1.37496 1.48174 1.53525 1.61401 2.30928 2.43366 2.60208 3.04845 3.22704 3.37670 3.43054 3.49577 3.59130 3.77582 3.82713 3.95475 3.98162 4.15512 4.20739 4.27407 4.38399 4.48055 4.59505 4.60885 4.68488 4.84126 4.88396 4.95283 5.03056 5.17370 5.23910 5.37153 5.37729 5.52571 5.53060 5.78420 6.02572 6.46193 6.62300 6.69294 6.70431 6.79353 7.20240 7.35285 8.82218 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.017074 B = 0.002071 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.517755 B =13519.545734 C =14364.670148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.093 3.907 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.544 4.544 6 H 0.053 0.947 7 C 0.008 3.992 8 N -0.926 5.926 9 Si 0.966 3.034 10 H -0.269 1.269 11 H -0.268 1.268 12 H -0.282 1.282 13 C 0.497 3.503 14 O -0.579 6.579 15 C 0.063 3.937 16 O -0.350 6.350 17 C 0.474 3.526 18 O -0.520 6.520 19 C -0.123 4.123 20 C 0.106 3.894 21 N -0.517 5.517 22 C 0.386 3.614 23 N -0.558 5.558 24 C 0.170 3.830 25 C -0.314 4.314 26 C 0.500 3.500 27 O -0.588 6.588 28 H 0.060 0.940 29 H 0.043 0.957 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.030 0.970 34 H 0.000 1.000 35 H 0.268 0.732 36 H 0.115 0.885 37 H 0.129 0.871 38 H 0.148 0.852 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.149 0.851 42 H 0.255 0.745 43 H 0.196 0.804 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.815 -3.584 27.030 28.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.029 4.029 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.582 4.582 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.566 5.566 9 Si 0.791 3.209 10 H -0.193 1.193 11 H -0.193 1.193 12 H -0.208 1.208 13 C 0.284 3.716 14 O -0.459 6.459 15 C -0.014 4.014 16 O -0.266 6.266 17 C 0.318 3.682 18 O -0.409 6.409 19 C -0.161 4.161 20 C -0.016 4.016 21 N -0.232 5.232 22 C 0.104 3.896 23 N -0.279 5.279 24 C 0.031 3.969 25 C -0.339 4.339 26 C 0.301 3.699 27 O -0.470 6.470 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.048 0.952 34 H 0.018 0.982 35 H 0.077 0.923 36 H 0.133 0.867 37 H 0.147 0.853 38 H 0.166 0.834 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.167 0.833 42 H 0.271 0.729 43 H 0.213 0.787 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.670 -3.194 26.982 28.840 hybrid contribution 1.906 -0.415 -1.242 2.312 sum -7.764 -3.609 25.740 27.126 Atomic orbital electron populations 1.22172 0.94092 1.03809 1.01967 1.21878 0.95728 0.80918 1.04356 1.48212 1.63562 1.15266 1.05698 1.18787 0.95484 0.91716 0.79851 1.21728 0.97897 1.32067 1.06543 0.92896 1.25832 1.02299 0.94497 0.96460 1.70047 1.37611 1.34106 1.14823 0.85385 0.79115 0.77994 0.78416 1.19321 1.19306 1.20793 1.20614 0.78329 0.86672 0.85957 1.90686 1.47153 1.20289 1.87790 1.22845 1.05030 0.91809 0.81693 1.86561 1.78935 1.45734 1.15356 1.23743 0.73488 0.86812 0.84196 1.90682 1.43319 1.20272 1.86664 1.21673 1.06600 0.99876 0.87945 1.21846 1.06465 0.92698 0.80641 1.46858 1.11848 1.36990 1.27504 1.26177 0.95101 0.81048 0.87241 1.68537 1.23528 1.24076 1.11801 1.23127 0.86145 0.91523 0.96081 1.22991 1.04541 1.05378 1.00966 1.17843 0.81777 0.84316 0.85928 1.90963 1.44603 1.45942 1.65509 0.92071 0.93766 0.88417 0.90211 0.88368 0.95162 0.98163 0.92338 0.86685 0.85297 0.83423 0.88021 0.89252 0.83324 0.72929 0.78671 0.82555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 10.24 71.98 0.74 -2.96 16 2 C 0.09 2.68 5.93 86.38 0.51 3.20 16 3 N -0.60 -24.58 2.46 -826.15 -2.03 -26.61 16 4 C 0.26 13.93 5.16 85.63 0.44 14.37 16 5 C -0.54 -31.19 9.39 25.60 0.24 -30.95 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.48 5.46 84.65 0.46 0.94 16 8 N -0.93 -55.65 13.29 21.45 0.28 -55.36 16 9 Si 0.97 45.07 29.54 68.60 2.03 47.09 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 13 C 0.50 20.62 7.75 87.66 0.68 21.30 16 14 O -0.58 -30.47 16.08 15.75 0.25 -30.21 16 15 C 0.06 1.81 4.50 71.23 0.32 2.13 16 16 O -0.35 -10.32 9.75 -45.07 -0.44 -10.76 16 17 C 0.47 10.39 7.96 71.23 0.57 10.96 16 18 O -0.52 -12.31 15.73 21.95 0.35 -11.97 16 19 C -0.12 -1.76 6.13 29.85 0.18 -1.58 16 20 C 0.11 1.22 4.66 86.38 0.40 1.62 16 21 N -0.52 -6.28 2.57 -655.02 -1.68 -7.97 16 22 C 0.39 2.31 11.48 180.32 2.07 4.38 16 23 N -0.56 -5.38 10.39 -199.73 -2.08 -7.46 16 24 C 0.17 1.68 11.20 83.96 0.94 2.62 16 25 C -0.31 -4.78 10.07 22.48 0.23 -4.55 16 26 C 0.50 10.24 7.45 84.88 0.63 10.87 16 27 O -0.59 -17.75 16.79 -5.24 -0.09 -17.84 16 28 H 0.06 1.26 7.22 -2.39 -0.02 1.25 16 29 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 2.44 8.07 -2.39 -0.02 2.42 16 32 H 0.10 2.18 6.44 -2.39 -0.02 2.17 16 33 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 34 H 0.00 0.01 7.42 -2.39 -0.02 0.00 16 35 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 36 H 0.12 2.92 7.39 -2.39 -0.02 2.90 16 37 H 0.13 2.87 7.18 -2.39 -0.02 2.86 16 38 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.09 1.58 7.42 -2.39 -0.02 1.57 16 41 H 0.15 0.59 7.97 -2.38 -0.02 0.57 16 42 H 0.26 -1.18 8.03 -2.91 -0.02 -1.21 16 43 H 0.20 0.65 8.06 -2.91 -0.02 0.62 16 44 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -89.86 385.31 6.03 -83.83 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: 1.02 Total: 4.90 kcal Atomic # 6 Polarization: 23.93 SS G_CDS: 8.41 Total: 32.34 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -5.50 Total: -97.39 kcal Atomic # 8 Polarization: -70.85 SS G_CDS: 0.07 Total: -70.78 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -89.86 6.03 -83.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796337218.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.503 kcal (2) G-P(sol) polarization free energy of solvation -89.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds