Wall clock time and date at job start Tue Mar 31 2020 20:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.69693 * 2 1 4 4 C 1.52761 * 109.50906 * 239.89043 * 2 1 3 5 5 H 1.08991 * 109.56699 * 65.66552 * 4 2 1 6 6 N 1.46497 * 109.38445 * 305.62592 * 4 2 1 7 7 C 1.34773 * 120.00005 * 155.14595 * 6 4 2 8 8 O 1.21283 * 120.00309 * 0.02562 * 7 6 4 9 9 C 1.50704 * 120.00053 * 179.97438 * 7 6 4 10 10 F 1.39903 * 109.47174 * 180.02562 * 9 7 6 11 11 F 1.39896 * 109.47118 * 300.00088 * 9 7 6 12 12 F 1.39903 * 109.47103 * 60.00134 * 9 7 6 13 13 C 1.53043 * 109.38176 * 185.70412 * 4 2 1 14 14 C 1.53042 * 109.54040 * 61.23363 * 13 4 2 15 15 C 1.53190 * 109.31560 * 298.63574 * 14 13 4 16 16 N 1.46925 * 109.58970 * 120.35717 * 2 1 3 17 17 C 1.34777 * 120.63091 * 353.41739 * 16 2 1 18 18 O 1.21587 * 119.99846 * 5.03473 * 17 16 2 19 19 N 1.34769 * 120.00098 * 185.02206 * 17 16 2 20 20 C 1.46508 * 119.99995 * 175.02295 * 19 17 16 21 21 C 1.50702 * 109.47062 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99918 * 0.02562 * 21 20 19 23 23 C 1.37873 * 119.99470 * 180.02562 * 21 20 19 24 24 N 1.31519 * 119.99371 * 180.02562 * 23 21 20 25 25 Si 1.86793 * 120.00528 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47075 * 89.99982 * 25 23 21 27 27 H 1.48506 * 109.47373 * 209.99931 * 25 23 21 28 28 H 1.48505 * 109.47184 * 329.99828 * 25 23 21 29 29 H 1.08999 * 109.47346 * 304.49688 * 1 2 3 30 30 H 1.08997 * 109.47552 * 64.49991 * 1 2 3 31 31 H 1.09002 * 109.47042 * 184.49708 * 1 2 3 32 32 H 0.97003 * 120.00178 * 335.14706 * 6 4 2 33 33 H 1.08999 * 109.45896 * 301.21651 * 13 4 2 34 34 H 1.09001 * 109.46265 * 181.25704 * 13 4 2 35 35 H 1.08998 * 109.49865 * 178.68352 * 14 13 4 36 36 H 1.09002 * 109.52399 * 58.60476 * 14 13 4 37 37 H 1.08993 * 109.58679 * 294.84897 * 15 14 13 38 38 H 1.08999 * 109.70821 * 174.48472 * 15 14 13 39 39 H 0.96996 * 120.00479 * 355.03232 * 19 17 16 40 40 H 1.08999 * 109.46785 * 60.00649 * 20 19 17 41 41 H 1.08996 * 109.46931 * 300.00344 * 20 19 17 42 42 H 0.97002 * 119.99687 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0401 -0.7223 -1.2456 5 1 1.7632 -0.1564 -2.1349 6 7 1.4438 -2.0588 -1.3111 7 6 1.3202 -2.6841 -2.4986 8 8 1.7032 -2.1406 -3.5130 9 6 0.7073 -4.0592 -2.5660 10 9 0.6882 -4.4968 -3.8947 11 9 1.4656 -4.9461 -1.7943 12 9 -0.6006 -4.0115 -2.0714 13 6 3.5638 -0.8460 -1.1728 14 6 3.9524 -1.6684 0.0580 15 6 3.4646 -0.9518 1.3210 16 7 2.0226 -0.6996 1.1944 17 6 1.1675 -1.1070 2.1532 18 8 -0.0310 -0.9792 1.9931 19 7 1.6408 -1.6564 3.2891 20 6 0.7201 -1.9990 4.3761 21 6 1.4962 -2.5929 5.5233 22 1 2.5680 -2.7036 5.4503 23 6 0.8378 -2.9948 6.6661 24 7 1.5152 -3.5126 7.6675 25 14 -1.0161 -2.8040 6.7921 26 1 -1.6760 -4.0313 6.2788 27 1 -1.3968 -2.5942 8.2121 28 1 -1.4493 -1.6348 5.9856 29 1 -0.3634 0.5820 0.8469 30 1 -0.3634 0.4424 -0.9275 31 1 -0.3633 -1.0245 0.0806 32 1 1.1378 -2.4937 -0.4999 33 1 4.0057 0.1478 -1.0996 34 1 3.9314 -1.3414 -2.0714 35 1 5.0364 -1.7758 0.0964 36 1 3.4911 -2.6542 -0.0022 37 1 3.9929 -0.0049 1.4309 38 1 3.6507 -1.5776 2.1938 39 1 2.5909 -1.8249 3.3872 40 1 -0.0111 -2.7237 4.0179 41 1 0.2052 -1.0995 4.7132 42 1 1.0520 -3.7957 8.4713 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847363910.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:35 Heat of formation + Delta-G solvation = -191.566229 kcal Electronic energy + Delta-G solvation = -31252.639403 eV Core-core repulsion = 26432.877421 eV Total energy + Delta-G solvation = -4819.761982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.57407 -48.09133 -48.07191 -41.16309 -39.76369 -37.66291 -35.01215 -34.51376 -32.78653 -32.57335 -31.50493 -28.53515 -27.64175 -27.04870 -24.71851 -22.92649 -22.30079 -21.69124 -20.61145 -19.63682 -19.49352 -19.01620 -18.79660 -17.84294 -16.61861 -16.45737 -16.21500 -15.82829 -15.66644 -14.96521 -14.90445 -14.80956 -14.62269 -14.46108 -14.34355 -14.17686 -14.17428 -14.08587 -13.94609 -13.65858 -13.61216 -13.15760 -13.04502 -12.53198 -12.28558 -12.20399 -12.14383 -11.60480 -11.30166 -11.14002 -11.00090 -10.97165 -10.78675 -10.71899 -9.99482 -9.73901 -9.52638 -8.91907 -8.81637 -8.62181 -8.08910 -6.25103 -4.27552 1.45026 1.58855 2.77475 2.86411 3.24389 3.31754 3.36687 3.38912 3.57395 3.78601 3.83691 4.22302 4.30138 4.41552 4.52909 4.60266 4.72169 5.04379 5.08836 5.10671 5.17806 5.33270 5.36448 5.46820 5.63945 5.70399 5.77070 5.80790 5.96784 6.15209 6.37193 6.61902 6.65527 6.75240 7.04972 7.16254 7.21396 7.27268 7.41886 8.18678 8.56347 8.73391 9.06626 9.35486 10.86820 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.013532 B = 0.003549 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.738325 B = 7887.299334 C = 8668.504917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.156 3.844 3 H 0.087 0.913 4 C 0.131 3.869 5 H 0.106 0.894 6 N -0.682 5.682 7 C 0.486 3.514 8 O -0.484 6.484 9 C 0.448 3.552 10 F -0.155 7.155 11 F -0.166 7.166 12 F -0.165 7.165 13 C -0.131 4.131 14 C -0.136 4.136 15 C 0.110 3.890 16 N -0.638 5.638 17 C 0.695 3.305 18 O -0.590 6.590 19 N -0.721 5.721 20 C 0.238 3.762 21 C -0.544 4.544 22 H 0.078 0.922 23 C 0.079 3.921 24 N -0.892 5.892 25 Si 0.877 3.123 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.261 1.261 29 H 0.080 0.920 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.415 0.585 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.391 0.609 40 H 0.020 0.980 41 H 0.022 0.978 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.974 4.478 -20.099 20.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.051 3.949 3 H 0.105 0.895 4 C 0.027 3.973 5 H 0.124 0.876 6 N -0.335 5.335 7 C 0.263 3.737 8 O -0.357 6.357 9 C 0.390 3.610 10 F -0.137 7.137 11 F -0.148 7.148 12 F -0.146 7.146 13 C -0.169 4.169 14 C -0.174 4.174 15 C -0.014 4.014 16 N -0.378 5.378 17 C 0.397 3.603 18 O -0.470 6.470 19 N -0.375 5.375 20 C 0.115 3.885 21 C -0.582 4.582 22 H 0.096 0.904 23 C -0.125 4.125 24 N -0.529 5.529 25 Si 0.704 3.296 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.185 1.185 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.252 0.748 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.227 0.773 40 H 0.038 0.962 41 H 0.040 0.960 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.325 4.878 -20.668 21.495 hybrid contribution -0.564 -0.670 0.687 1.113 sum 2.761 4.209 -19.981 20.605 Atomic orbital electron populations 1.22213 0.91557 1.04805 1.00734 1.21239 0.96802 0.94793 0.82041 0.89513 1.21686 0.93448 0.82008 1.00179 0.87613 1.45957 1.60034 1.18977 1.08496 1.20218 0.81582 0.86114 0.85773 1.90853 1.47128 1.64025 1.33718 1.20305 0.77549 0.88059 0.75065 1.93260 1.96160 1.90313 1.33929 1.93283 1.75508 1.70896 1.75077 1.93297 1.37321 1.96595 1.87393 1.21925 0.94244 1.01755 0.99009 1.21915 1.01670 0.99580 0.94283 1.21661 0.80853 1.00524 0.98361 1.47391 1.06542 1.62687 1.21188 1.16117 0.84955 0.78888 0.80363 1.90939 1.13646 1.62819 1.79551 1.45714 1.11845 1.64569 1.15399 1.19372 0.89506 0.95568 0.84021 1.21065 0.95982 1.42465 0.98663 0.90403 1.24776 0.98662 0.93960 0.95142 1.69880 1.36271 1.40975 1.05802 0.86810 0.85414 0.79736 0.77661 1.19846 1.20955 1.18495 0.90091 0.94303 0.90511 0.74789 0.89965 0.90882 0.90194 0.91406 0.91185 0.89560 0.77331 0.96239 0.95965 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 7.28 37.16 0.27 -1.43 16 2 C 0.16 1.61 3.17 -67.82 -0.22 1.39 16 3 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.13 1.19 2.32 -68.03 -0.16 1.03 16 5 H 0.11 0.93 7.58 -51.93 -0.39 0.54 16 6 N -0.68 -7.01 3.51 -53.91 -0.19 -7.20 16 7 C 0.49 5.47 7.32 -10.99 -0.08 5.39 16 8 O -0.48 -6.39 16.28 5.56 0.09 -6.30 16 9 C 0.45 4.99 3.43 36.01 0.12 5.11 16 10 F -0.16 -1.82 16.92 2.25 0.04 -1.78 16 11 F -0.17 -1.85 17.30 2.25 0.04 -1.81 16 12 F -0.16 -1.90 17.30 2.25 0.04 -1.86 16 13 C -0.13 -1.00 5.58 -26.69 -0.15 -1.15 16 14 C -0.14 -1.09 5.93 -26.61 -0.16 -1.25 16 15 C 0.11 1.04 6.39 -3.71 -0.02 1.01 16 16 N -0.64 -7.79 2.64 -171.16 -0.45 -8.24 16 17 C 0.70 11.90 8.21 -86.92 -0.71 11.19 16 18 O -0.59 -11.75 11.75 5.29 0.06 -11.68 16 19 N -0.72 -13.57 5.46 -66.41 -0.36 -13.93 16 20 C 0.24 5.57 4.50 -5.19 -0.02 5.54 16 21 C -0.54 -14.38 9.83 -34.44 -0.34 -14.72 16 22 H 0.08 2.15 7.84 -52.49 -0.41 1.73 16 23 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 24 N -0.89 -25.91 13.96 55.43 0.77 -25.14 16 25 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 26 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 29 H 0.08 1.21 6.80 -51.93 -0.35 0.86 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 1.12 5.78 -51.93 -0.30 0.82 16 32 H 0.41 4.62 7.76 -40.82 -0.32 4.30 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.63 7.53 -51.93 -0.39 0.24 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.88 5.64 -51.93 -0.29 0.59 16 39 H 0.39 6.55 5.81 -40.82 -0.24 6.31 16 40 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 41 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 42 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 349.45 15.07 5.27 5.27 Total: -1.00 -30.79 349.45 -6.09 -36.88 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.17 Total: 5.35 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: -1.56 Total: 14.18 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.23 Total: -54.51 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.15 Total: -17.99 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.12 Total: -5.45 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.79 -6.09 -36.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847363910.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.682 kcal (2) G-P(sol) polarization free energy of solvation -30.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds