Wall clock time and date at job start Tue Mar 31 2020 20:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.69693 * 2 1 4 4 C 1.52761 * 109.50906 * 239.89043 * 2 1 3 5 5 H 1.08991 * 109.56699 * 65.66552 * 4 2 1 6 6 N 1.46497 * 109.38445 * 305.62592 * 4 2 1 7 7 C 1.34773 * 120.00005 * 155.14595 * 6 4 2 8 8 O 1.21283 * 120.00309 * 0.02562 * 7 6 4 9 9 C 1.50704 * 120.00053 * 179.97438 * 7 6 4 10 10 F 1.39903 * 109.47174 * 180.02562 * 9 7 6 11 11 F 1.39896 * 109.47118 * 300.00088 * 9 7 6 12 12 F 1.39903 * 109.47103 * 60.00134 * 9 7 6 13 13 C 1.53043 * 109.38176 * 185.70412 * 4 2 1 14 14 C 1.53042 * 109.54040 * 61.23363 * 13 4 2 15 15 C 1.53190 * 109.31560 * 298.63574 * 14 13 4 16 16 N 1.46925 * 109.58970 * 120.35717 * 2 1 3 17 17 C 1.34777 * 120.63091 * 353.41739 * 16 2 1 18 18 O 1.21587 * 119.99846 * 5.03473 * 17 16 2 19 19 N 1.34769 * 120.00098 * 185.02206 * 17 16 2 20 20 C 1.46508 * 119.99995 * 175.02295 * 19 17 16 21 21 C 1.50702 * 109.47062 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99918 * 0.02562 * 21 20 19 23 23 C 1.37873 * 119.99470 * 180.02562 * 21 20 19 24 24 N 1.31519 * 119.99371 * 180.02562 * 23 21 20 25 25 Si 1.86793 * 120.00528 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47075 * 89.99982 * 25 23 21 27 27 H 1.48506 * 109.47373 * 209.99931 * 25 23 21 28 28 H 1.48505 * 109.47184 * 329.99828 * 25 23 21 29 29 H 1.08999 * 109.47346 * 304.49688 * 1 2 3 30 30 H 1.08997 * 109.47552 * 64.49991 * 1 2 3 31 31 H 1.09002 * 109.47042 * 184.49708 * 1 2 3 32 32 H 0.97003 * 120.00178 * 335.14706 * 6 4 2 33 33 H 1.08999 * 109.45896 * 301.21651 * 13 4 2 34 34 H 1.09001 * 109.46265 * 181.25704 * 13 4 2 35 35 H 1.08998 * 109.49865 * 178.68352 * 14 13 4 36 36 H 1.09002 * 109.52399 * 58.60476 * 14 13 4 37 37 H 1.08993 * 109.58679 * 294.84897 * 15 14 13 38 38 H 1.08999 * 109.70821 * 174.48472 * 15 14 13 39 39 H 0.96996 * 120.00479 * 355.03232 * 19 17 16 40 40 H 1.08999 * 109.46785 * 60.00649 * 20 19 17 41 41 H 1.08996 * 109.46931 * 300.00344 * 20 19 17 42 42 H 0.97002 * 119.99687 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0401 -0.7223 -1.2456 5 1 1.7632 -0.1564 -2.1349 6 7 1.4438 -2.0588 -1.3111 7 6 1.3202 -2.6841 -2.4986 8 8 1.7032 -2.1406 -3.5130 9 6 0.7073 -4.0592 -2.5660 10 9 0.6882 -4.4968 -3.8947 11 9 1.4656 -4.9461 -1.7943 12 9 -0.6006 -4.0115 -2.0714 13 6 3.5638 -0.8460 -1.1728 14 6 3.9524 -1.6684 0.0580 15 6 3.4646 -0.9518 1.3210 16 7 2.0226 -0.6996 1.1944 17 6 1.1675 -1.1070 2.1532 18 8 -0.0310 -0.9792 1.9931 19 7 1.6408 -1.6564 3.2891 20 6 0.7201 -1.9990 4.3761 21 6 1.4962 -2.5929 5.5233 22 1 2.5680 -2.7036 5.4503 23 6 0.8378 -2.9948 6.6661 24 7 1.5152 -3.5126 7.6675 25 14 -1.0161 -2.8040 6.7921 26 1 -1.6760 -4.0313 6.2788 27 1 -1.3968 -2.5942 8.2121 28 1 -1.4493 -1.6348 5.9856 29 1 -0.3634 0.5820 0.8469 30 1 -0.3634 0.4424 -0.9275 31 1 -0.3633 -1.0245 0.0806 32 1 1.1378 -2.4937 -0.4999 33 1 4.0057 0.1478 -1.0996 34 1 3.9314 -1.3414 -2.0714 35 1 5.0364 -1.7758 0.0964 36 1 3.4911 -2.6542 -0.0022 37 1 3.9929 -0.0049 1.4309 38 1 3.6507 -1.5776 2.1938 39 1 2.5909 -1.8249 3.3872 40 1 -0.0111 -2.7237 4.0179 41 1 0.2052 -1.0995 4.7132 42 1 1.0520 -3.7957 8.4713 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847363910.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:34 Heat of formation + Delta-G solvation = -212.497996 kcal Electronic energy + Delta-G solvation = -31253.547073 eV Core-core repulsion = 26432.877421 eV Total energy + Delta-G solvation = -4820.669652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -51.48825 -49.00485 -48.99183 -42.14457 -40.85329 -38.74824 -36.39299 -35.70103 -34.47190 -33.61429 -32.65133 -29.88361 -28.96663 -27.98734 -25.66898 -24.37640 -23.17497 -22.93050 -21.74887 -20.68482 -20.50690 -19.92879 -19.76654 -19.15261 -18.20444 -17.57207 -17.26613 -16.96830 -16.57955 -16.37163 -15.98590 -15.78587 -15.74500 -15.52823 -15.37887 -15.14224 -15.09649 -15.09382 -14.93344 -14.87143 -14.71576 -14.53793 -14.24209 -13.89300 -13.78341 -13.34277 -13.02150 -12.92224 -12.71155 -12.51595 -12.08564 -11.94328 -11.89285 -11.75459 -11.63629 -11.56044 -10.89003 -10.58959 -10.22572 -9.94040 -9.40776 -8.37532 -6.43811 0.55026 0.70945 1.34993 1.37481 1.49515 1.71062 1.91952 2.23158 2.30330 2.47757 2.89250 2.93434 2.98865 3.11810 3.54083 3.70651 3.85608 4.02267 4.21277 4.30326 4.41184 4.57284 4.63751 4.73201 4.80079 4.84365 4.94609 5.04127 5.09954 5.12190 5.15101 5.28525 5.32680 5.42796 5.60142 5.73899 5.77251 5.96061 6.21863 6.32694 6.58433 7.14008 7.23000 7.71862 8.77201 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.013532 B = 0.003549 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.738325 B = 7887.299334 C = 8668.504917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.157 3.843 3 H 0.117 0.883 4 C 0.132 3.868 5 H 0.116 0.884 6 N -0.678 5.678 7 C 0.492 3.508 8 O -0.503 6.503 9 C 0.451 3.549 10 F -0.159 7.159 11 F -0.166 7.166 12 F -0.168 7.168 13 C -0.124 4.124 14 C -0.130 4.130 15 C 0.105 3.895 16 N -0.627 5.627 17 C 0.694 3.306 18 O -0.620 6.620 19 N -0.725 5.725 20 C 0.253 3.747 21 C -0.543 4.543 22 H 0.057 0.943 23 C 0.028 3.972 24 N -0.932 5.932 25 Si 0.937 3.063 26 H -0.267 1.267 27 H -0.276 1.276 28 H -0.258 1.258 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.411 0.589 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.051 0.949 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.400 0.600 40 H 0.009 0.991 41 H 0.010 0.990 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.600 5.670 -21.564 22.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.053 3.947 3 H 0.135 0.865 4 C 0.028 3.972 5 H 0.134 0.866 6 N -0.329 5.329 7 C 0.270 3.730 8 O -0.378 6.378 9 C 0.393 3.607 10 F -0.140 7.140 11 F -0.148 7.148 12 F -0.149 7.149 13 C -0.162 4.162 14 C -0.168 4.168 15 C -0.017 4.017 16 N -0.365 5.365 17 C 0.396 3.604 18 O -0.502 6.502 19 N -0.381 5.381 20 C 0.129 3.871 21 C -0.581 4.581 22 H 0.076 0.924 23 C -0.173 4.173 24 N -0.571 5.571 25 Si 0.761 3.239 26 H -0.192 1.192 27 H -0.201 1.201 28 H -0.183 1.183 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.247 0.753 33 H 0.126 0.874 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.070 0.930 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.238 0.762 40 H 0.027 0.973 41 H 0.028 0.972 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.001 6.092 -22.172 23.339 hybrid contribution -0.691 -1.023 1.090 1.647 sum 3.310 5.068 -21.082 21.934 Atomic orbital electron populations 1.22041 0.93251 1.02898 1.00550 1.21440 0.95439 0.96221 0.81559 0.86542 1.21828 0.94547 0.81157 0.99640 0.86588 1.46039 1.59513 1.19384 1.07944 1.20110 0.81304 0.85913 0.85694 1.90845 1.48208 1.64455 1.34248 1.20300 0.77394 0.88163 0.74870 1.93252 1.96165 1.90381 1.34182 1.93283 1.75475 1.70935 1.75062 1.93292 1.37602 1.96615 1.87429 1.21916 0.92756 1.03084 0.98471 1.21881 1.02800 0.98576 0.93580 1.21907 0.79017 1.01913 0.98878 1.47379 1.07250 1.61538 1.20359 1.16218 0.85041 0.78584 0.80585 1.90941 1.15284 1.63791 1.80212 1.45437 1.11717 1.65577 1.15324 1.18899 0.89525 0.94338 0.84370 1.21284 0.95384 1.41835 0.99619 0.92437 1.25557 1.02935 0.93814 0.94956 1.69985 1.38107 1.42456 1.06581 0.85869 0.80312 0.79818 0.77923 1.19229 1.20132 1.18250 0.92835 0.92191 0.92909 0.75263 0.87360 0.91140 0.88062 0.92990 0.88606 0.90535 0.76232 0.97309 0.97231 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 7.28 71.98 0.52 -2.57 16 2 C 0.16 2.83 3.17 44.83 0.14 2.97 16 3 H 0.12 1.54 8.14 -2.38 -0.02 1.52 16 4 C 0.13 2.01 2.32 44.93 0.10 2.12 16 5 H 0.12 1.65 7.58 -2.39 -0.02 1.63 16 6 N -0.68 -12.91 3.51 -442.86 -1.56 -14.47 16 7 C 0.49 10.46 7.32 87.66 0.64 11.10 16 8 O -0.50 -12.48 16.28 -3.04 -0.05 -12.53 16 9 C 0.45 9.71 3.43 71.24 0.24 9.96 16 10 F -0.16 -3.60 16.92 44.97 0.76 -2.84 16 11 F -0.17 -3.58 17.30 44.97 0.78 -2.80 16 12 F -0.17 -3.81 17.30 44.97 0.78 -3.03 16 13 C -0.12 -1.44 5.58 30.62 0.17 -1.27 16 14 C -0.13 -1.69 5.93 30.67 0.18 -1.51 16 15 C 0.11 1.71 6.39 86.36 0.55 2.26 16 16 N -0.63 -14.11 2.64 -813.70 -2.15 -16.26 16 17 C 0.69 23.35 8.21 179.06 1.47 24.82 16 18 O -0.62 -24.78 11.75 -3.99 -0.05 -24.83 16 19 N -0.72 -27.16 5.46 -482.29 -2.63 -29.79 16 20 C 0.25 11.91 4.50 85.63 0.39 12.29 16 21 C -0.54 -29.10 9.83 25.60 0.25 -28.85 16 22 H 0.06 3.24 7.84 -2.91 -0.02 3.22 16 23 C 0.03 1.53 5.47 84.65 0.46 1.99 16 24 N -0.93 -54.79 13.96 21.45 0.30 -54.49 16 25 Si 0.94 43.28 27.47 68.60 1.88 45.17 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 27 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 28 H -0.26 -11.75 6.54 99.48 0.65 -11.10 16 29 H 0.05 1.58 6.80 -2.39 -0.02 1.56 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.52 5.78 -2.39 -0.01 1.50 16 32 H 0.41 8.80 7.76 -92.71 -0.72 8.09 16 33 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.05 0.86 7.53 -2.39 -0.02 0.85 16 37 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 1.43 5.64 -2.39 -0.01 1.41 16 39 H 0.40 13.31 5.81 -92.71 -0.54 12.77 16 40 H 0.01 0.44 7.57 -2.39 -0.02 0.42 16 41 H 0.01 0.49 7.20 -2.39 -0.02 0.47 16 42 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -67.13 349.45 2.98 -64.15 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -0.22 Total: 18.41 kcal Atomic # 6 Polarization: 28.18 SS G_CDS: 5.13 Total: 33.31 kcal Atomic # 7 Polarization: -108.97 SS G_CDS: -6.04 Total: -115.00 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -0.10 Total: -37.36 kcal Atomic # 9 Polarization: -10.99 SS G_CDS: 2.32 Total: -8.67 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.88 Total: 45.17 kcal Total: -67.13 2.98 -64.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847363910.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.349 kcal (2) G-P(sol) polarization free energy of solvation -67.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds