Wall clock time and date at job start Tue Mar 31 2020 20:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.45215 * 2 1 4 4 C 1.53108 * 109.50685 * 240.01886 * 2 1 3 5 5 C 1.53192 * 109.32900 * 178.63005 * 4 2 1 6 6 N 1.46924 * 108.78003 * 54.63762 * 5 4 2 7 7 C 1.34769 * 120.63509 * 126.36484 * 6 5 4 8 8 O 1.21590 * 120.00085 * 174.98916 * 7 6 5 9 9 N 1.34783 * 120.00260 * 354.98637 * 7 6 5 10 10 C 1.46497 * 120.00267 * 185.07368 * 9 7 6 11 11 C 1.50692 * 109.47047 * 180.02562 * 10 9 7 12 12 H 1.08004 * 120.00386 * 359.97438 * 11 10 9 13 13 C 1.37884 * 120.00239 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99732 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00072 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47423 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47150 * 120.00414 * 15 13 11 18 18 H 1.48503 * 109.46956 * 239.99856 * 15 13 11 19 19 C 1.46927 * 118.73481 * 306.39081 * 6 5 4 20 20 C 1.53048 * 109.46041 * 119.96439 * 2 1 3 21 21 H 1.08992 * 109.49485 * 301.37180 * 20 2 1 22 22 N 1.46497 * 109.49493 * 61.43815 * 20 2 1 23 23 C 1.34776 * 119.99846 * 204.93511 * 22 20 2 24 24 O 1.21284 * 119.99714 * 0.02562 * 23 22 20 25 25 C 1.50697 * 120.00498 * 179.97438 * 23 22 20 26 26 F 1.39890 * 109.47576 * 180.02562 * 25 23 22 27 27 F 1.39900 * 109.47065 * 300.00584 * 25 23 22 28 28 F 1.39902 * 109.46672 * 60.00090 * 25 23 22 29 29 H 1.08995 * 109.47404 * 300.03509 * 1 2 3 30 30 H 1.08997 * 109.47223 * 60.03595 * 1 2 3 31 31 H 1.09003 * 109.47028 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.48816 * 58.67342 * 4 2 1 33 33 H 1.08994 * 109.51701 * 298.60109 * 4 2 1 34 34 H 1.08997 * 109.59245 * 294.84272 * 5 4 2 35 35 H 1.09007 * 109.70488 * 174.49239 * 5 4 2 36 36 H 0.97000 * 119.99551 * 5.07359 * 9 7 6 37 37 H 1.09003 * 109.47109 * 300.00035 * 10 9 7 38 38 H 1.09003 * 109.47339 * 59.99553 * 10 9 7 39 39 H 0.96995 * 120.00307 * 179.97438 * 14 13 11 40 40 H 1.09004 * 109.59034 * 293.81892 * 19 6 5 41 41 H 1.08998 * 109.58983 * 173.39528 * 19 6 5 42 42 H 0.96999 * 120.00146 * 24.93508 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0412 -0.7212 -1.2501 5 6 3.5727 -0.6889 -1.2634 6 7 4.0686 -1.2490 0.0012 7 6 4.9621 -2.2579 0.0019 8 8 5.4336 -2.6517 1.0512 9 7 5.3330 -2.8305 -1.1605 10 6 6.2176 -3.9982 -1.1524 11 6 6.4776 -4.4413 -2.5691 12 1 6.0284 -3.9068 -3.3931 13 6 7.2888 -5.5291 -2.8134 14 7 7.8362 -6.1797 -1.8101 15 14 7.6116 -6.0778 -4.5696 16 1 6.8852 -5.1857 -5.5084 17 1 9.0685 -6.0107 -4.8493 18 1 7.1373 -7.4738 -4.7470 19 6 3.5714 -0.6885 1.2651 20 6 2.0398 -0.7207 1.2502 21 1 1.6567 -0.2211 2.1398 22 7 1.5802 -2.1116 1.2343 23 6 1.4529 -2.7925 2.3904 24 8 1.7184 -2.2535 3.4440 25 6 0.9795 -4.2231 2.3743 26 9 0.9278 -4.7121 3.6839 27 9 -0.2959 -4.2858 1.8028 28 9 1.8667 -4.9993 1.6209 29 1 -0.3634 0.5143 0.8896 30 1 -0.3633 0.5133 -0.8903 31 1 -0.3633 -1.0277 0.0005 32 1 1.6591 -0.2213 -2.1401 33 1 1.6993 -1.7560 -1.2389 34 1 3.9158 0.3405 -1.3665 35 1 3.9457 -1.2835 -2.0974 36 1 5.0142 -2.4693 -2.0024 37 1 7.1618 -3.7355 -0.6752 38 1 5.7440 -4.8090 -0.5988 39 1 8.4066 -6.9451 -1.9818 40 1 3.9142 0.3411 1.3683 41 1 3.9412 -1.2842 2.0996 42 1 1.3675 -2.5426 0.3917 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854026863.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:52 Heat of formation + Delta-G solvation = -236.802200 kcal Electronic energy + Delta-G solvation = -31231.877526 eV Core-core repulsion = 26410.153965 eV Total energy + Delta-G solvation = -4821.723561 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -51.51986 -49.04095 -49.01390 -41.96008 -40.78801 -39.01834 -36.21779 -35.80922 -34.38756 -34.18485 -31.73544 -29.77985 -29.11637 -28.12456 -25.11376 -24.40029 -23.97174 -22.87705 -21.61472 -20.58194 -20.53934 -19.95307 -19.78557 -19.31485 -18.03330 -17.54070 -17.26200 -16.84826 -16.72814 -16.45164 -16.13493 -15.78310 -15.71564 -15.40970 -15.26987 -15.13638 -15.11317 -15.10719 -14.94814 -14.74151 -14.66518 -14.46011 -14.11582 -13.91840 -13.73164 -13.38061 -12.88135 -12.83552 -12.74906 -12.60300 -12.20043 -11.95488 -11.80605 -11.53931 -11.48605 -11.42875 -11.08439 -10.81074 -10.72625 -10.00633 -9.34496 -8.27521 -6.44316 0.51923 0.71507 1.44051 1.45819 1.58693 1.74778 1.89026 2.22698 2.39193 2.46019 2.88081 2.92598 3.07872 3.19077 3.54381 3.70505 3.80545 3.98945 4.30333 4.36809 4.45776 4.54346 4.70473 4.74683 4.86379 4.89460 4.96847 5.07441 5.11120 5.16034 5.26799 5.34257 5.47829 5.48855 5.59374 5.68510 5.78992 5.85789 6.11115 6.37075 6.67857 7.20173 7.26500 7.71906 8.85165 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.011605 B = 0.003817 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.074850 B = 7333.242019 C = 8488.781068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.121 0.879 4 C -0.128 4.128 5 C 0.101 3.899 6 N -0.624 5.624 7 C 0.691 3.309 8 O -0.650 6.650 9 N -0.721 5.721 10 C 0.287 3.713 11 C -0.550 4.550 12 H 0.085 0.915 13 C 0.003 3.997 14 N -0.932 5.932 15 Si 0.986 3.014 16 H -0.249 1.249 17 H -0.281 1.281 18 H -0.280 1.280 19 C 0.114 3.886 20 C 0.135 3.865 21 H 0.115 0.885 22 N -0.674 5.674 23 C 0.486 3.514 24 O -0.508 6.508 25 C 0.451 3.549 26 F -0.162 7.162 27 F -0.157 7.157 28 F -0.173 7.173 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.117 0.883 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.403 0.597 37 H -0.020 1.020 38 H -0.019 1.019 39 H 0.268 0.732 40 H 0.106 0.894 41 H 0.054 0.946 42 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.384 15.683 -1.134 25.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 H 0.139 0.861 4 C -0.166 4.166 5 C -0.021 4.021 6 N -0.362 5.362 7 C 0.392 3.608 8 O -0.533 6.533 9 N -0.377 5.377 10 C 0.163 3.837 11 C -0.588 4.588 12 H 0.103 0.897 13 C -0.196 4.196 14 N -0.571 5.571 15 Si 0.809 3.191 16 H -0.173 1.173 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.010 4.010 20 C 0.031 3.969 21 H 0.133 0.867 22 N -0.327 5.327 23 C 0.264 3.736 24 O -0.383 6.383 25 C 0.393 3.607 26 F -0.143 7.143 27 F -0.138 7.138 28 F -0.154 7.154 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.135 0.865 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.242 0.758 37 H -0.002 1.002 38 H -0.001 1.001 39 H 0.077 0.923 40 H 0.124 0.876 41 H 0.073 0.927 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -19.752 15.624 0.375 25.188 hybrid contribution 0.510 -1.456 -0.778 1.728 sum -19.242 14.168 -0.402 23.899 Atomic orbital electron populations 1.21823 0.93034 1.02120 1.03289 1.21454 0.97179 1.00719 0.91094 0.86146 1.22060 0.93480 1.01332 0.99755 1.22009 0.95470 1.00450 0.84168 1.47234 1.44663 1.35807 1.08480 1.16282 0.80250 0.80233 0.83993 1.90852 1.61158 1.68277 1.33021 1.45426 1.52484 1.33015 1.06784 1.18368 0.86910 0.81611 0.96787 1.21596 1.30902 1.14543 0.91794 0.89651 1.26079 0.94780 0.95992 1.02755 1.70161 1.32391 1.20736 1.33807 0.85095 0.78001 0.78211 0.77790 1.17259 1.20629 1.20598 1.21933 0.93433 1.00106 0.85538 1.21895 0.92747 0.79519 1.02696 0.86718 1.45964 1.64149 1.14864 1.07680 1.20247 0.80586 0.86337 0.86447 1.90840 1.48939 1.67438 1.31099 1.20286 0.76487 0.89231 0.74724 1.93238 1.96052 1.88876 1.36163 1.93267 1.39295 1.96845 1.84408 1.93327 1.68487 1.77400 1.76194 0.92061 0.90188 0.93333 0.86491 0.92467 0.88423 0.90267 0.75845 1.00158 1.00091 0.92325 0.87583 0.92732 0.74591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.05 71.98 0.65 -0.33 16 2 C -0.09 -0.73 2.48 -10.74 -0.03 -0.75 16 3 H 0.12 0.54 8.14 -2.39 -0.02 0.53 16 4 C -0.13 -1.24 5.20 30.69 0.16 -1.08 16 5 C 0.10 1.62 6.43 86.36 0.56 2.18 16 6 N -0.62 -16.89 2.89 -836.90 -2.42 -19.31 16 7 C 0.69 28.74 8.30 179.05 1.49 30.23 16 8 O -0.65 -34.60 15.79 -4.00 -0.06 -34.67 16 9 N -0.72 -30.79 5.46 -482.30 -2.63 -33.42 16 10 C 0.29 16.02 5.43 85.63 0.47 16.48 16 11 C -0.55 -29.74 9.28 25.60 0.24 -29.51 16 12 H 0.09 4.11 7.60 -2.91 -0.02 4.09 16 13 C 0.00 0.19 5.46 84.66 0.46 0.65 16 14 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 15 Si 0.99 41.92 29.54 68.60 2.03 43.95 16 16 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 17 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 18 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 19 C 0.11 2.72 6.02 86.36 0.52 3.24 16 20 C 0.14 2.25 2.24 45.07 0.10 2.35 16 21 H 0.12 1.82 7.58 -2.39 -0.02 1.80 16 22 N -0.67 -13.97 4.25 -442.17 -1.88 -15.85 16 23 C 0.49 13.13 7.32 87.66 0.64 13.77 16 24 O -0.51 -16.45 16.28 -3.04 -0.05 -16.50 16 25 C 0.45 12.09 3.43 71.23 0.24 12.34 16 26 F -0.16 -4.75 16.92 44.97 0.76 -3.99 16 27 F -0.16 -3.41 17.30 44.97 0.78 -2.63 16 28 F -0.17 -5.44 17.30 44.97 0.78 -4.66 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.05 0.42 7.54 -2.39 -0.02 0.40 16 32 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.70 6.40 -2.39 -0.02 0.68 16 34 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.40 5.56 -2.38 -0.01 1.39 16 36 H 0.40 13.94 5.78 -92.71 -0.54 13.40 16 37 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 38 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 39 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 40 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.05 1.86 7.03 -2.39 -0.02 1.84 16 42 H 0.42 7.49 6.64 -92.71 -0.62 6.88 16 Total: -1.00 -80.94 358.55 3.02 -77.92 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -0.06 Total: 16.08 kcal Atomic # 6 Polarization: 44.07 SS G_CDS: 5.50 Total: 49.56 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -6.65 Total: -125.06 kcal Atomic # 8 Polarization: -51.06 SS G_CDS: -0.11 Total: -51.17 kcal Atomic # 9 Polarization: -13.59 SS G_CDS: 2.32 Total: -11.28 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -80.94 3.02 -77.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854026863.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.885 kcal (2) G-P(sol) polarization free energy of solvation -80.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds