Wall clock time and date at job start Tue Mar 31 2020 20:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.60891 * 2 1 4 4 C 1.53374 * 109.61026 * 120.34031 * 2 1 3 5 5 N 1.46969 * 108.63441 * 70.31731 * 4 2 1 6 6 C 1.34775 * 120.59386 * 235.20323 * 5 4 2 7 7 O 1.21284 * 119.99964 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00084 * 180.02562 * 6 5 4 9 9 C 1.50698 * 109.47023 * 180.02562 * 8 6 5 10 10 C 1.38226 * 119.60344 * 125.00352 * 9 8 6 11 11 C 1.38609 * 119.17705 * 179.97438 * 10 9 8 12 12 C 1.38776 * 118.40718 * 359.97438 * 11 10 9 13 13 Cl 1.73604 * 120.43229 * 180.02562 * 12 11 10 14 14 C 1.38306 * 119.14092 * 359.97438 * 12 11 10 15 15 N 1.31853 * 119.60243 * 304.72801 * 9 8 6 16 16 C 1.46960 * 118.80983 * 55.47995 * 5 4 2 17 17 C 1.53815 * 108.40136 * 304.47888 * 16 5 4 18 18 H 1.08995 * 109.88179 * 289.77173 * 17 16 5 19 19 C 1.52998 * 109.53790 * 169.30424 * 17 16 5 20 20 N 1.46967 * 109.60772 * 239.48368 * 2 1 3 21 21 C 1.36938 * 120.59148 * 115.50409 * 20 2 1 22 22 H 1.08001 * 120.00130 * 52.07004 * 21 20 2 23 23 C 1.38810 * 119.99811 * 232.07106 * 21 20 2 24 24 N 1.31621 * 119.99791 * 203.82635 * 23 21 20 25 25 Si 1.86797 * 120.00433 * 23.82691 * 23 21 20 26 26 H 1.48500 * 109.46868 * 95.18882 * 25 23 21 27 27 H 1.48496 * 109.47587 * 215.19078 * 25 23 21 28 28 H 1.48500 * 109.46769 * 335.19287 * 25 23 21 29 29 H 1.09004 * 109.46882 * 299.66088 * 1 2 3 30 30 H 1.08998 * 109.47234 * 59.65633 * 1 2 3 31 31 H 1.08994 * 109.47220 * 179.65855 * 1 2 3 32 32 H 1.09002 * 109.60533 * 310.57316 * 4 2 1 33 33 H 1.08997 * 109.60913 * 190.06352 * 4 2 1 34 34 H 1.09002 * 109.46919 * 59.99882 * 8 6 5 35 35 H 1.09003 * 109.47060 * 300.00325 * 8 6 5 36 36 H 1.08007 * 120.41352 * 359.97153 * 10 9 8 37 37 H 1.07996 * 120.79615 * 179.97438 * 11 10 9 38 38 H 1.08002 * 119.63233 * 179.97438 * 14 12 11 39 39 H 1.08996 * 109.61580 * 64.26557 * 16 5 4 40 40 H 1.09005 * 109.60903 * 184.77574 * 16 5 4 41 41 H 1.09002 * 109.47138 * 291.90475 * 19 17 16 42 42 H 1.08997 * 109.47051 * 51.89780 * 19 17 16 43 43 H 1.08996 * 109.47235 * 171.90528 * 19 17 16 44 44 H 0.97006 * 119.99775 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0448 -0.7298 1.2469 5 7 1.7605 -2.1645 1.1022 6 6 1.0606 -2.8237 2.0465 7 8 0.6587 -2.2329 3.0265 8 6 0.7772 -4.2950 1.8848 9 6 -0.0156 -4.7869 3.0682 10 6 -1.2212 -5.4310 2.8623 11 6 -1.9429 -5.8803 3.9571 12 6 -1.4219 -5.6642 5.2251 13 17 -2.2815 -6.2056 6.6329 14 6 -0.2085 -5.0129 5.3527 15 7 0.4517 -4.6025 4.2873 16 6 2.2586 -2.8686 -0.0877 17 6 1.7390 -2.1377 -1.3374 18 1 0.6641 -2.2895 -1.4356 19 6 2.4497 -2.6791 -2.5794 20 7 2.0232 -0.7030 -1.1927 21 6 2.7352 -0.0333 -2.1517 22 1 3.5958 0.5563 -1.8722 23 6 2.3508 -0.1123 -3.4832 24 7 3.2319 0.1051 -4.4365 25 14 0.5831 -0.5269 -3.9221 26 1 -0.1779 0.7279 -4.1491 27 1 0.5598 -1.3504 -5.1576 28 1 -0.0379 -1.2878 -2.8082 29 1 -0.3633 0.5086 0.8931 30 1 -0.3633 0.5191 -0.8869 31 1 -0.3633 -1.0276 -0.0061 32 1 1.5384 -0.3439 2.1317 33 1 3.1199 -0.5776 1.3421 34 1 1.7183 -4.8417 1.8248 35 1 0.2044 -4.4565 0.9716 36 1 -1.5962 -5.5823 1.8608 37 1 -2.8879 -6.3863 3.8265 38 1 0.2041 -4.8402 6.3357 39 1 3.3485 -2.8653 -0.0854 40 1 1.8935 -3.8957 -0.0846 41 1 3.5003 -2.3900 -2.5519 42 1 2.3725 -3.7662 -2.5972 43 1 1.9827 -2.2670 -3.4739 44 1 2.9633 0.0495 -5.3670 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880452924.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:26 Heat of formation + Delta-G solvation = 32.591227 kcal Electronic energy + Delta-G solvation = -27570.574213 eV Core-core repulsion = 23743.098332 eV Total energy + Delta-G solvation = -3827.475881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.74484 -39.63875 -37.54427 -36.91489 -34.19316 -33.41836 -32.73741 -32.53539 -31.59968 -28.79688 -28.26642 -26.31770 -25.62305 -24.04298 -23.39797 -22.71520 -21.26017 -19.65091 -18.49600 -17.43320 -17.29221 -16.74169 -16.43718 -16.08079 -15.49086 -15.19050 -15.02732 -14.51949 -14.42440 -13.94638 -13.66301 -13.44020 -13.33857 -13.21729 -12.82576 -12.44420 -12.41398 -12.27842 -12.19400 -11.94659 -11.72239 -11.55740 -11.49756 -11.35303 -10.91447 -10.74990 -10.59407 -10.21903 -10.12666 -10.02060 -9.99305 -9.74895 -9.60390 -9.43433 -9.03407 -8.60990 -8.17925 -6.56830 -6.12996 -3.66756 0.62706 0.91553 1.71375 2.90313 3.18648 3.28592 3.41056 3.45851 3.52664 3.98772 4.32566 4.42482 4.42759 4.60075 4.76793 4.80684 4.93029 5.16641 5.17576 5.31214 5.32810 5.48340 5.53476 5.61500 5.66179 5.70857 5.85073 5.93690 6.03479 6.16675 6.17709 6.22304 6.28380 6.35854 6.43818 6.52700 6.64897 6.78823 6.90596 7.01617 7.27137 7.68160 7.78132 8.00427 8.43047 8.47943 8.93633 9.59274 10.13781 11.00193 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.025550 B = 0.002691 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.642472 B =10402.522165 C =10617.626692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.150 3.850 3 H 0.082 0.918 4 C 0.104 3.896 5 N -0.598 5.598 6 C 0.518 3.482 7 O -0.537 6.537 8 C -0.095 4.095 9 C 0.155 3.845 10 C -0.155 4.155 11 C -0.066 4.066 12 C -0.096 4.096 13 Cl -0.061 7.061 14 C 0.121 3.879 15 N -0.439 5.439 16 C 0.092 3.908 17 C 0.151 3.849 18 H 0.038 0.962 19 C -0.135 4.135 20 N -0.591 5.591 21 C -0.281 4.281 22 H 0.071 0.929 23 C 0.061 3.939 24 N -0.888 5.888 25 Si 0.864 3.136 26 H -0.295 1.295 27 H -0.297 1.297 28 H -0.256 1.256 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.163 0.837 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.056 0.944 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.997 -13.977 14.276 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.043 3.957 3 H 0.100 0.900 4 C -0.019 4.019 5 N -0.330 5.330 6 C 0.305 3.695 7 O -0.414 6.414 8 C -0.136 4.136 9 C 0.017 3.983 10 C -0.175 4.175 11 C -0.092 4.092 12 C -0.125 4.125 13 Cl -0.033 7.033 14 C -0.038 4.038 15 N -0.147 5.147 16 C -0.032 4.032 17 C 0.045 3.955 18 H 0.056 0.944 19 C -0.193 4.193 20 N -0.315 5.315 21 C -0.410 4.410 22 H 0.088 0.912 23 C -0.142 4.142 24 N -0.526 5.526 25 Si 0.692 3.308 26 H -0.223 1.223 27 H -0.224 1.224 28 H -0.180 1.180 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.163 0.837 37 H 0.162 0.838 38 H 0.181 0.819 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.056 0.944 43 H 0.075 0.925 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.396 -13.250 14.815 21.207 hybrid contribution -1.976 -0.679 -0.599 2.173 sum -9.372 -13.928 14.216 21.998 Atomic orbital electron populations 1.22172 0.98491 1.00690 1.00245 1.21110 0.91832 0.96037 0.86686 0.89974 1.22172 1.00352 0.79552 0.99858 1.47943 1.53668 1.10408 1.21014 1.20030 0.78523 0.88246 0.82745 1.90690 1.52067 1.68887 1.29749 1.20695 1.01947 0.95169 0.95771 1.20774 0.92227 0.92880 0.92441 1.21984 0.95302 1.00070 1.00151 1.21468 0.99949 0.97431 0.90396 1.22121 0.96646 1.04467 0.89285 1.98376 1.76482 1.88629 1.39774 1.22791 0.89815 0.92670 0.98501 1.67639 1.33842 1.15076 0.98187 1.22577 0.99751 0.94957 0.85936 1.21222 0.96730 0.85494 0.92104 0.94412 1.21898 1.03157 0.97051 0.97175 1.44286 1.63279 1.02431 1.21497 1.18483 1.07393 1.29437 0.85660 0.91169 1.25865 0.96606 0.95534 0.96206 1.69920 1.33355 1.49426 0.99946 0.87254 0.87977 0.77896 0.77652 1.22251 1.22436 1.18031 0.93766 0.93086 0.93849 0.89829 0.91725 0.86785 0.87172 0.83721 0.83760 0.81948 0.90916 0.91044 0.90296 0.94419 0.92523 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.14 37.16 0.34 -2.55 16 2 C 0.15 2.87 3.31 -67.48 -0.22 2.65 16 3 H 0.08 1.60 7.94 -51.93 -0.41 1.18 16 4 C 0.10 1.79 5.96 -3.59 -0.02 1.77 16 5 N -0.60 -9.63 2.60 -172.21 -0.45 -10.08 16 6 C 0.52 8.17 7.63 -10.99 -0.08 8.09 16 7 O -0.54 -10.24 14.75 5.55 0.08 -10.16 16 8 C -0.10 -1.10 4.44 -29.04 -0.13 -1.23 16 9 C 0.15 1.89 5.76 -82.59 -0.48 1.41 16 10 C -0.16 -1.49 9.71 -39.45 -0.38 -1.87 16 11 C -0.07 -0.60 9.98 -39.25 -0.39 -0.99 16 12 C -0.10 -0.96 6.34 -39.36 -0.25 -1.21 16 13 Cl -0.06 -0.54 28.99 -51.86 -1.50 -2.04 16 14 C 0.12 1.38 10.99 -17.51 -0.19 1.19 16 15 N -0.44 -6.03 9.24 -9.45 -0.09 -6.12 16 16 C 0.09 1.40 5.84 -3.37 -0.02 1.38 16 17 C 0.15 2.84 2.03 -67.25 -0.14 2.71 16 18 H 0.04 0.75 5.84 -51.93 -0.30 0.45 16 19 C -0.14 -2.61 7.68 37.16 0.29 -2.32 16 20 N -0.59 -12.68 1.94 -156.76 -0.30 -12.98 16 21 C -0.28 -7.17 8.65 -15.06 -0.13 -7.30 16 22 H 0.07 1.98 8.06 -52.49 -0.42 1.56 16 23 C 0.06 1.61 3.86 -17.43 -0.07 1.54 16 24 N -0.89 -25.04 13.97 55.49 0.78 -24.27 16 25 Si 0.86 20.68 24.98 -169.99 -4.25 16.43 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.26 -5.80 5.11 56.52 0.29 -5.52 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.04 0.81 7.00 -51.93 -0.36 0.44 16 32 H 0.08 1.45 6.97 -51.93 -0.36 1.09 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.11 1.12 7.90 -51.93 -0.41 0.71 16 35 H 0.11 1.01 7.46 -51.93 -0.39 0.62 16 36 H 0.15 1.00 7.95 -52.48 -0.42 0.58 16 37 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.16 1.53 8.06 -52.49 -0.42 1.10 16 39 H 0.07 1.13 8.12 -51.93 -0.42 0.71 16 40 H 0.07 0.83 5.91 -51.93 -0.31 0.52 16 41 H 0.08 1.67 7.49 -51.93 -0.39 1.29 16 42 H 0.04 0.57 8.13 -51.93 -0.42 0.15 16 43 H 0.06 1.24 3.37 -51.93 -0.17 1.06 16 44 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 358.10 15.07 5.40 5.40 Total: -1.00 -31.08 358.10 -8.37 -39.45 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.15 Total: 1.10 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -1.88 Total: 3.26 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -0.06 Total: -53.44 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.16 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.25 Total: 16.43 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.08 -8.37 -39.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880452924.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.039 kcal (2) G-P(sol) polarization free energy of solvation -31.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds