Wall clock time and date at job start Tue Mar 31 2020 20:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.60891 * 2 1 4 4 C 1.53374 * 109.61026 * 120.34031 * 2 1 3 5 5 N 1.46969 * 108.63441 * 70.31731 * 4 2 1 6 6 C 1.34775 * 120.59386 * 235.20323 * 5 4 2 7 7 O 1.21284 * 119.99964 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00084 * 180.02562 * 6 5 4 9 9 C 1.50698 * 109.47023 * 180.02562 * 8 6 5 10 10 C 1.38226 * 119.60344 * 125.00352 * 9 8 6 11 11 C 1.38609 * 119.17705 * 179.97438 * 10 9 8 12 12 C 1.38776 * 118.40718 * 359.97438 * 11 10 9 13 13 Cl 1.73604 * 120.43229 * 180.02562 * 12 11 10 14 14 C 1.38306 * 119.14092 * 359.97438 * 12 11 10 15 15 N 1.31853 * 119.60243 * 304.72801 * 9 8 6 16 16 C 1.46960 * 118.80983 * 55.47995 * 5 4 2 17 17 C 1.53815 * 108.40136 * 304.47888 * 16 5 4 18 18 H 1.08995 * 109.88179 * 289.77173 * 17 16 5 19 19 C 1.52998 * 109.53790 * 169.30424 * 17 16 5 20 20 N 1.46967 * 109.60772 * 239.48368 * 2 1 3 21 21 C 1.36938 * 120.59148 * 115.50409 * 20 2 1 22 22 H 1.08001 * 120.00130 * 52.07004 * 21 20 2 23 23 C 1.38810 * 119.99811 * 232.07106 * 21 20 2 24 24 N 1.31621 * 119.99791 * 203.82635 * 23 21 20 25 25 Si 1.86797 * 120.00433 * 23.82691 * 23 21 20 26 26 H 1.48500 * 109.46868 * 95.18882 * 25 23 21 27 27 H 1.48496 * 109.47587 * 215.19078 * 25 23 21 28 28 H 1.48500 * 109.46769 * 335.19287 * 25 23 21 29 29 H 1.09004 * 109.46882 * 299.66088 * 1 2 3 30 30 H 1.08998 * 109.47234 * 59.65633 * 1 2 3 31 31 H 1.08994 * 109.47220 * 179.65855 * 1 2 3 32 32 H 1.09002 * 109.60533 * 310.57316 * 4 2 1 33 33 H 1.08997 * 109.60913 * 190.06352 * 4 2 1 34 34 H 1.09002 * 109.46919 * 59.99882 * 8 6 5 35 35 H 1.09003 * 109.47060 * 300.00325 * 8 6 5 36 36 H 1.08007 * 120.41352 * 359.97153 * 10 9 8 37 37 H 1.07996 * 120.79615 * 179.97438 * 11 10 9 38 38 H 1.08002 * 119.63233 * 179.97438 * 14 12 11 39 39 H 1.08996 * 109.61580 * 64.26557 * 16 5 4 40 40 H 1.09005 * 109.60903 * 184.77574 * 16 5 4 41 41 H 1.09002 * 109.47138 * 291.90475 * 19 17 16 42 42 H 1.08997 * 109.47051 * 51.89780 * 19 17 16 43 43 H 1.08996 * 109.47235 * 171.90528 * 19 17 16 44 44 H 0.97006 * 119.99775 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0448 -0.7298 1.2469 5 7 1.7605 -2.1645 1.1022 6 6 1.0606 -2.8237 2.0465 7 8 0.6587 -2.2329 3.0265 8 6 0.7772 -4.2950 1.8848 9 6 -0.0156 -4.7869 3.0682 10 6 -1.2212 -5.4310 2.8623 11 6 -1.9429 -5.8803 3.9571 12 6 -1.4219 -5.6642 5.2251 13 17 -2.2815 -6.2056 6.6329 14 6 -0.2085 -5.0129 5.3527 15 7 0.4517 -4.6025 4.2873 16 6 2.2586 -2.8686 -0.0877 17 6 1.7390 -2.1377 -1.3374 18 1 0.6641 -2.2895 -1.4356 19 6 2.4497 -2.6791 -2.5794 20 7 2.0232 -0.7030 -1.1927 21 6 2.7352 -0.0333 -2.1517 22 1 3.5958 0.5563 -1.8722 23 6 2.3508 -0.1123 -3.4832 24 7 3.2319 0.1051 -4.4365 25 14 0.5831 -0.5269 -3.9221 26 1 -0.1779 0.7279 -4.1491 27 1 0.5598 -1.3504 -5.1576 28 1 -0.0379 -1.2878 -2.8082 29 1 -0.3633 0.5086 0.8931 30 1 -0.3633 0.5191 -0.8869 31 1 -0.3633 -1.0276 -0.0061 32 1 1.5384 -0.3439 2.1317 33 1 3.1199 -0.5776 1.3421 34 1 1.7183 -4.8417 1.8248 35 1 0.2044 -4.4565 0.9716 36 1 -1.5962 -5.5823 1.8608 37 1 -2.8879 -6.3863 3.8265 38 1 0.2041 -4.8402 6.3357 39 1 3.3485 -2.8653 -0.0854 40 1 1.8935 -3.8957 -0.0846 41 1 3.5003 -2.3900 -2.5519 42 1 2.3725 -3.7662 -2.5972 43 1 1.9827 -2.2670 -3.4739 44 1 2.9633 0.0495 -5.3670 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880452924.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:25 Heat of formation + Delta-G solvation = 13.830379 kcal Electronic energy + Delta-G solvation = -27571.387745 eV Core-core repulsion = 23743.098332 eV Total energy + Delta-G solvation = -3828.289412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.65479 -40.80462 -38.96287 -37.64504 -35.74958 -34.70388 -33.64048 -33.45003 -33.40748 -30.20239 -29.48716 -27.70133 -27.01675 -25.10998 -24.76449 -23.66098 -22.69179 -20.99067 -20.07702 -18.64905 -18.18643 -17.85449 -17.67432 -17.16767 -16.86363 -16.49630 -16.36335 -15.94340 -15.39515 -15.18331 -15.01039 -14.72424 -14.46006 -14.36860 -14.14721 -14.05556 -13.75058 -13.34398 -13.27464 -13.19595 -13.05806 -12.79839 -12.70688 -12.43713 -12.37808 -12.30022 -12.19401 -11.82930 -11.69491 -11.66530 -11.30649 -10.85965 -10.74796 -10.52745 -10.45492 -9.82420 -9.66361 -8.33039 -8.17292 -5.68640 -0.12995 0.20505 1.00131 1.35909 1.46490 1.53944 1.74176 2.05018 2.44593 2.67141 3.07887 3.21041 3.34907 3.56901 3.69589 3.78117 3.97660 4.09620 4.10484 4.19420 4.32910 4.42602 4.46939 4.52245 4.53312 4.61294 4.66511 4.70335 4.76803 4.83002 4.90124 4.92708 4.99800 5.00412 5.08180 5.15988 5.26979 5.40850 5.49128 5.58834 5.72698 6.01018 6.34984 6.56955 6.91717 7.12780 7.27856 7.64710 8.21709 8.99554 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.025550 B = 0.002691 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.642472 B =10402.522165 C =10617.626692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.147 3.853 3 H 0.068 0.932 4 C 0.114 3.886 5 N -0.601 5.601 6 C 0.516 3.484 7 O -0.574 6.574 8 C -0.090 4.090 9 C 0.131 3.869 10 C -0.148 4.148 11 C -0.066 4.066 12 C -0.098 4.098 13 Cl -0.053 7.053 14 C 0.103 3.897 15 N -0.477 5.477 16 C 0.101 3.899 17 C 0.146 3.854 18 H 0.042 0.958 19 C -0.131 4.131 20 N -0.602 5.602 21 C -0.266 4.266 22 H 0.028 0.972 23 C 0.022 3.978 24 N -0.934 5.934 25 Si 0.919 3.081 26 H -0.312 1.312 27 H -0.298 1.298 28 H -0.232 1.232 29 H 0.059 0.941 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.134 0.866 35 H 0.144 0.856 36 H 0.178 0.822 37 H 0.172 0.828 38 H 0.169 0.831 39 H 0.069 0.931 40 H 0.121 0.879 41 H 0.049 0.951 42 H 0.084 0.916 43 H 0.029 0.971 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.250 -16.972 14.975 24.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.040 3.960 3 H 0.086 0.914 4 C -0.010 4.010 5 N -0.333 5.333 6 C 0.305 3.695 7 O -0.453 6.453 8 C -0.130 4.130 9 C -0.007 4.007 10 C -0.168 4.168 11 C -0.092 4.092 12 C -0.127 4.127 13 Cl -0.024 7.024 14 C -0.056 4.056 15 N -0.186 5.186 16 C -0.022 4.022 17 C 0.040 3.960 18 H 0.059 0.941 19 C -0.189 4.189 20 N -0.327 5.327 21 C -0.395 4.395 22 H 0.046 0.954 23 C -0.177 4.177 24 N -0.575 5.575 25 Si 0.748 3.252 26 H -0.241 1.241 27 H -0.226 1.226 28 H -0.156 1.156 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.152 0.848 35 H 0.162 0.838 36 H 0.195 0.805 37 H 0.189 0.811 38 H 0.186 0.814 39 H 0.087 0.913 40 H 0.139 0.861 41 H 0.068 0.932 42 H 0.103 0.897 43 H 0.048 0.952 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.663 -16.282 15.549 24.500 hybrid contribution -1.237 0.269 -0.694 1.444 sum -10.900 -16.013 14.855 24.411 Atomic orbital electron populations 1.22037 0.97361 1.00758 1.00298 1.21136 0.92584 0.95620 0.86612 0.91373 1.21884 0.99838 0.80837 0.98468 1.48009 1.53951 1.09752 1.21633 1.20789 0.77149 0.89922 0.81648 1.90679 1.53302 1.70166 1.31161 1.20794 1.03580 0.91562 0.97051 1.21025 0.93511 0.94072 0.92113 1.22315 0.94047 0.98597 1.01809 1.21851 1.00776 0.96844 0.89743 1.22200 0.96317 1.04024 0.90199 1.98379 1.76118 1.88445 1.39495 1.22939 0.90679 0.93441 0.98511 1.67564 1.35327 1.16351 0.99317 1.22519 0.99611 0.96629 0.83472 1.21365 0.96887 0.83887 0.93856 0.94058 1.21830 1.00913 1.00005 0.96146 1.44384 1.63196 1.03953 1.21136 1.18211 1.06111 1.28618 0.86576 0.95448 1.26279 0.99302 0.96139 0.96013 1.70021 1.35051 1.52245 1.00189 0.86366 0.83847 0.77015 0.77979 1.24092 1.22558 1.15561 0.92193 0.94539 0.93597 0.90010 0.92290 0.84792 0.83833 0.80494 0.81054 0.81420 0.91297 0.86136 0.93180 0.89716 0.95184 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.11 9.14 71.98 0.66 -4.45 16 2 C 0.15 5.55 3.31 45.03 0.15 5.70 16 3 H 0.07 2.71 7.94 -2.39 -0.02 2.69 16 4 C 0.11 3.83 5.96 86.42 0.52 4.35 16 5 N -0.60 -17.79 2.60 -817.14 -2.12 -19.92 16 6 C 0.52 14.78 7.63 87.66 0.67 15.44 16 7 O -0.57 -21.00 14.75 -3.04 -0.04 -21.04 16 8 C -0.09 -1.69 4.44 29.10 0.13 -1.56 16 9 C 0.13 2.77 5.76 42.55 0.24 3.02 16 10 C -0.15 -2.23 9.71 22.36 0.22 -2.02 16 11 C -0.07 -0.96 9.98 22.49 0.22 -0.74 16 12 C -0.10 -1.76 6.34 22.41 0.14 -1.62 16 13 Cl -0.05 -0.83 28.99 -2.72 -0.08 -0.91 16 14 C 0.10 2.23 10.99 84.70 0.93 3.16 16 15 N -0.48 -12.35 9.24 -183.80 -1.70 -14.05 16 16 C 0.10 2.70 5.84 86.57 0.51 3.21 16 17 C 0.15 5.08 2.03 45.18 0.09 5.17 16 18 H 0.04 1.46 5.84 -2.39 -0.01 1.44 16 19 C -0.13 -4.78 7.68 71.98 0.55 -4.22 16 20 N -0.60 -25.49 1.94 -649.86 -1.26 -26.75 16 21 C -0.27 -13.87 8.65 84.03 0.73 -13.15 16 22 H 0.03 1.66 8.06 -2.91 -0.02 1.63 16 23 C 0.02 1.18 3.86 84.86 0.33 1.51 16 24 N -0.93 -54.35 13.97 21.65 0.30 -54.05 16 25 Si 0.92 42.83 24.98 68.60 1.71 44.55 16 26 H -0.31 -15.29 7.11 99.48 0.71 -14.59 16 27 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 28 H -0.23 -9.77 5.11 99.48 0.51 -9.26 16 29 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.04 1.57 7.00 -2.39 -0.02 1.56 16 32 H 0.08 2.79 6.97 -2.39 -0.02 2.78 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.13 1.97 7.90 -2.39 -0.02 1.95 16 35 H 0.14 1.70 7.46 -2.39 -0.02 1.69 16 36 H 0.18 1.41 7.95 -2.91 -0.02 1.39 16 37 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 38 H 0.17 3.13 8.06 -2.91 -0.02 3.10 16 39 H 0.07 1.94 8.12 -2.39 -0.02 1.92 16 40 H 0.12 2.07 5.91 -2.38 -0.01 2.05 16 41 H 0.05 2.09 7.49 -2.39 -0.02 2.07 16 42 H 0.08 2.24 8.13 -2.39 -0.02 2.22 16 43 H 0.03 1.25 3.37 -2.39 -0.01 1.24 16 44 H 0.26 14.62 8.31 -92.70 -0.77 13.84 16 Total: -1.00 -70.80 358.10 3.71 -67.08 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.82 Total: 11.28 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 6.08 Total: 13.80 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -4.78 Total: -114.77 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.04 Total: -21.04 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.71 Total: 44.55 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -70.80 3.71 -67.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880452924.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.912 kcal (2) G-P(sol) polarization free energy of solvation -70.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds