Wall clock time and date at job start Tue Mar 31 2020 20:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.75055 * 2 1 4 4 C 1.53370 * 109.60759 * 120.42789 * 2 1 3 5 5 N 1.46966 * 108.63444 * 169.16617 * 4 2 1 6 6 C 1.34772 * 120.59567 * 124.75291 * 5 4 2 7 7 O 1.21284 * 120.00484 * 180.02562 * 6 5 4 8 8 C 1.50706 * 120.00119 * 0.02562 * 6 5 4 9 9 C 1.50692 * 109.47371 * 180.02562 * 8 6 5 10 10 C 1.38606 * 120.42751 * 99.72120 * 9 8 6 11 11 C 1.38670 * 118.43723 * 179.78327 * 10 9 8 12 12 C 1.38180 * 119.19120 * 0.49007 * 11 10 9 13 13 N 1.31882 * 120.78290 * 359.74704 * 12 11 10 14 14 C 1.31976 * 121.70271 * 0.02562 * 13 12 11 15 15 Cl 1.73603 * 119.63161 * 179.97438 * 14 13 12 16 16 C 1.46967 * 118.81135 * 304.77140 * 5 4 2 17 17 C 1.53370 * 108.63392 * 55.22835 * 16 5 4 18 18 H 1.08998 * 109.75127 * 190.74548 * 17 16 5 19 19 C 1.52992 * 109.61080 * 70.31832 * 17 16 5 20 20 N 1.46966 * 108.63444 * 310.57399 * 17 16 5 21 21 C 1.36937 * 120.59467 * 234.95204 * 20 17 16 22 22 H 1.07998 * 120.00153 * 150.98942 * 21 20 17 23 23 C 1.38811 * 120.00064 * 330.98882 * 21 20 17 24 24 N 1.31626 * 119.99788 * 343.13985 * 23 21 20 25 25 Si 1.86795 * 120.00224 * 163.13271 * 23 21 20 26 26 H 1.48507 * 109.46997 * 60.00200 * 25 23 21 27 27 H 1.48501 * 109.47498 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47301 * 300.00472 * 25 23 21 29 29 H 1.08994 * 109.47221 * 181.87188 * 1 2 3 30 30 H 1.08998 * 109.46702 * 301.87345 * 1 2 3 31 31 H 1.09003 * 109.46924 * 61.86785 * 1 2 3 32 32 H 1.08998 * 109.61118 * 49.42301 * 4 2 1 33 33 H 1.08994 * 109.61009 * 288.91048 * 4 2 1 34 34 H 1.09007 * 109.46343 * 300.00107 * 8 6 5 35 35 H 1.09001 * 109.46953 * 59.99472 * 8 6 5 36 36 H 1.08004 * 120.78002 * 359.97438 * 10 9 8 37 37 H 1.08004 * 120.39910 * 180.23576 * 11 10 9 38 38 H 1.08001 * 119.61111 * 179.76833 * 12 11 10 39 39 H 1.08998 * 109.61199 * 295.48276 * 16 5 4 40 40 H 1.08996 * 109.74929 * 175.05416 * 16 5 4 41 41 H 1.09005 * 109.47362 * 300.85254 * 19 17 16 42 42 H 1.09002 * 109.47208 * 60.85157 * 19 17 16 43 43 H 1.09004 * 109.47411 * 180.85320 * 19 17 16 44 44 H 0.96997 * 119.99671 * 175.69921 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8984 1.0259 0.0000 4 6 2.0447 -0.7317 1.2458 5 7 3.4908 -0.9490 1.0989 6 6 4.3493 -0.5127 2.0417 7 8 5.5406 -0.6974 1.9094 8 6 3.8289 0.2047 3.2607 9 6 4.9838 0.5850 4.1509 10 6 5.4895 1.8753 4.1320 11 6 6.5499 2.1814 4.9715 12 6 7.0709 1.1946 5.7864 13 7 6.5684 -0.0247 5.7756 14 6 5.5568 -0.3511 4.9933 15 17 4.9379 -1.9728 5.0220 16 6 3.9840 -1.6502 -0.0949 17 6 3.4693 -0.9185 -1.3406 18 1 3.6602 -1.5224 -2.2277 19 6 4.1801 0.4297 -1.4746 20 7 2.0232 -0.7012 -1.1937 21 6 1.1515 -1.1392 -2.1547 22 1 0.1428 -1.4141 -1.8838 23 6 1.5642 -1.2298 -3.4769 24 7 2.6503 -0.5998 -3.8719 25 14 0.5785 -2.2459 -4.6955 26 1 -0.8023 -1.7068 -4.7869 27 1 1.2249 -2.1815 -6.0309 28 1 0.5293 -3.6577 -4.2375 29 1 -0.3633 -1.0271 0.0336 30 1 -0.3633 0.5427 0.8727 31 1 -0.3633 0.4846 -0.9063 32 1 1.5383 -1.6922 1.3412 33 1 1.8540 -0.1253 2.1311 34 1 3.2963 1.1045 2.9528 35 1 3.1498 -0.4509 3.8058 36 1 5.0656 2.6256 3.4809 37 1 6.9661 3.1779 4.9852 38 1 7.8992 1.4245 6.4402 39 1 3.6156 -2.6761 -0.0949 40 1 5.0739 -1.6529 -0.0964 41 1 3.9927 1.0294 -0.5839 42 1 5.2522 0.2659 -1.5834 43 1 3.8018 0.9543 -2.3520 44 1 2.9736 -0.7130 -4.7794 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898132788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:36 Heat of formation + Delta-G solvation = 25.325967 kcal Electronic energy + Delta-G solvation = -27856.761703 eV Core-core repulsion = 24028.970777 eV Total energy + Delta-G solvation = -3827.790926 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -40.64635 -39.53844 -37.36555 -36.67922 -34.06926 -33.86534 -32.73038 -31.92633 -31.28494 -28.43422 -27.88994 -26.29392 -25.30951 -23.80905 -23.66582 -22.72048 -20.89692 -19.69407 -18.48607 -17.53840 -17.09550 -16.95185 -16.09431 -15.75444 -15.19117 -15.04049 -14.82880 -14.43990 -14.11334 -13.98068 -13.59843 -13.43128 -13.29513 -13.09943 -12.91517 -12.26614 -12.01543 -11.95981 -11.78421 -11.71639 -11.57185 -11.22215 -11.20406 -11.03283 -10.79204 -10.66778 -10.63161 -10.16800 -10.09568 -10.08377 -9.79769 -9.74675 -9.69828 -9.35932 -8.95344 -8.52944 -8.16942 -6.70046 -5.82143 -3.30721 0.74145 0.97925 1.76496 2.96270 3.29618 3.34528 3.41623 3.42383 3.60130 4.18803 4.43352 4.49556 4.59843 4.71531 4.81923 4.98626 5.09783 5.14981 5.30041 5.31962 5.45564 5.60609 5.62461 5.77200 5.83709 5.90700 6.02567 6.10482 6.20620 6.25299 6.27440 6.34172 6.46866 6.59867 6.74539 6.85913 6.88489 6.99466 7.04184 7.53306 7.55287 7.62765 7.77007 7.91526 8.37487 8.55006 9.14135 9.76014 10.32584 11.22335 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.022627 B = 0.003091 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.171802 B = 9055.879776 C = 9224.316951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.154 3.846 3 H 0.031 0.969 4 C 0.092 3.908 5 N -0.592 5.592 6 C 0.515 3.485 7 O -0.545 6.545 8 C -0.105 4.105 9 C -0.092 4.092 10 C -0.053 4.053 11 C -0.170 4.170 12 C 0.112 3.888 13 N -0.480 5.480 14 C 0.192 3.808 15 Cl -0.028 7.028 16 C 0.094 3.906 17 C 0.179 3.821 18 H 0.105 0.895 19 C -0.138 4.138 20 N -0.580 5.580 21 C -0.254 4.254 22 H 0.071 0.929 23 C 0.005 3.995 24 N -0.895 5.895 25 Si 0.899 3.101 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.285 1.285 29 H 0.055 0.945 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.164 0.836 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.020 0.980 42 H 0.028 0.972 43 H 0.075 0.925 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.513 5.092 17.135 18.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.046 3.954 3 H 0.048 0.952 4 C -0.033 4.033 5 N -0.323 5.323 6 C 0.302 3.698 7 O -0.423 6.423 8 C -0.145 4.145 9 C -0.096 4.096 10 C -0.079 4.079 11 C -0.189 4.189 12 C -0.045 4.045 13 N -0.191 5.191 14 C 0.028 3.972 15 Cl 0.000 7.000 16 C -0.029 4.029 17 C 0.072 3.928 18 H 0.123 0.877 19 C -0.196 4.196 20 N -0.303 5.303 21 C -0.383 4.383 22 H 0.089 0.911 23 C -0.194 4.194 24 N -0.539 5.539 25 Si 0.728 3.272 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.211 1.211 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.181 0.819 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.039 0.961 42 H 0.047 0.953 43 H 0.094 0.906 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.467 4.242 17.398 18.241 hybrid contribution -0.860 -0.007 -1.266 1.531 sum 2.607 4.234 16.132 16.881 Atomic orbital electron populations 1.21773 0.95211 1.01566 1.00843 1.20772 0.93256 0.93945 0.87395 0.95168 1.22479 0.80159 1.01007 0.99694 1.47953 1.06966 1.56362 1.21053 1.20104 0.86517 0.79526 0.83692 1.90681 1.15555 1.57886 1.78219 1.20719 0.96377 1.02800 0.94616 1.20032 0.98704 0.93652 0.97183 1.21505 0.94686 0.95260 0.96483 1.22182 0.97660 1.01483 0.97618 1.22642 0.98024 0.86902 0.96976 1.67008 1.09749 1.21004 1.21292 1.21430 0.93533 0.87716 0.94539 1.98406 1.84512 1.19622 1.97439 1.22474 0.99562 0.95458 0.85437 1.20732 0.82867 0.94938 0.94249 0.87695 1.21965 0.97637 0.99361 1.00681 1.44154 1.01951 1.64546 1.19661 1.19130 0.95759 1.37213 0.86185 0.91139 1.25041 0.98321 0.99349 0.96654 1.70033 1.24878 1.41324 1.17633 0.86444 0.79590 0.80547 0.80580 1.20971 1.21727 1.21118 0.92575 0.94090 0.91455 0.91433 0.91142 0.87453 0.87500 0.83796 0.83968 0.81921 0.92338 0.90144 0.96073 0.95328 0.90617 0.93622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 7.94 37.16 0.29 -1.92 16 2 C 0.15 2.82 3.23 -67.48 -0.22 2.61 16 3 H 0.03 0.59 7.40 -51.93 -0.38 0.21 16 4 C 0.09 1.41 5.82 -3.60 -0.02 1.39 16 5 N -0.59 -10.25 2.59 -172.49 -0.45 -10.69 16 6 C 0.51 8.59 7.47 -10.98 -0.08 8.51 16 7 O -0.55 -10.94 15.36 5.55 0.09 -10.86 16 8 C -0.10 -1.30 3.65 -29.04 -0.11 -1.41 16 9 C -0.09 -1.18 4.44 -104.45 -0.46 -1.65 16 10 C -0.05 -0.56 9.82 -39.29 -0.39 -0.95 16 11 C -0.17 -1.53 10.11 -39.44 -0.40 -1.93 16 12 C 0.11 1.14 11.18 -17.55 -0.20 0.94 16 13 N -0.48 -6.52 10.34 -10.36 -0.11 -6.63 16 14 C 0.19 2.71 7.16 -17.45 -0.12 2.58 16 15 Cl -0.03 -0.40 27.50 -51.86 -1.43 -1.82 16 16 C 0.09 1.85 5.96 -3.60 -0.02 1.83 16 17 C 0.18 3.99 2.35 -67.49 -0.16 3.83 16 18 H 0.11 2.66 6.04 -51.93 -0.31 2.35 16 19 C -0.14 -3.03 8.94 37.15 0.33 -2.69 16 20 N -0.58 -13.05 2.68 -157.03 -0.42 -13.48 16 21 C -0.25 -6.29 8.55 -15.06 -0.13 -6.41 16 22 H 0.07 1.70 6.26 -52.49 -0.33 1.38 16 23 C 0.01 0.14 4.91 -17.43 -0.09 0.05 16 24 N -0.89 -24.11 10.11 55.49 0.56 -23.54 16 25 Si 0.90 20.62 29.59 -169.99 -5.03 15.59 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 H 0.06 0.92 7.47 -51.93 -0.39 0.53 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 1.23 7.58 -51.93 -0.39 0.84 16 32 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 33 H 0.07 0.84 5.91 -51.93 -0.31 0.53 16 34 H 0.11 1.09 7.61 -51.93 -0.40 0.69 16 35 H 0.11 1.18 7.14 -51.93 -0.37 0.81 16 36 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 37 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 38 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.08 1.63 6.98 -51.93 -0.36 1.27 16 41 H 0.02 0.43 7.02 -51.93 -0.36 0.07 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 1.87 7.15 -51.93 -0.37 1.50 16 44 H 0.25 6.75 8.32 -40.82 -0.34 6.41 16 LS Contribution 362.63 15.07 5.46 5.46 Total: -1.00 -30.62 362.63 -9.16 -39.77 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.07 Total: 1.41 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -1.76 Total: 4.79 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.41 Total: -54.34 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.43 Total: -1.82 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.62 -9.16 -39.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898132788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.097 kcal (2) G-P(sol) polarization free energy of solvation -30.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds