Wall clock time and date at job start Tue Mar 31 2020 20:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.75055 * 2 1 4 4 C 1.53370 * 109.60759 * 120.42789 * 2 1 3 5 5 N 1.46966 * 108.63444 * 169.16617 * 4 2 1 6 6 C 1.34772 * 120.59567 * 124.75291 * 5 4 2 7 7 O 1.21284 * 120.00484 * 180.02562 * 6 5 4 8 8 C 1.50706 * 120.00119 * 0.02562 * 6 5 4 9 9 C 1.50692 * 109.47371 * 180.02562 * 8 6 5 10 10 C 1.38606 * 120.42751 * 99.72120 * 9 8 6 11 11 C 1.38670 * 118.43723 * 179.78327 * 10 9 8 12 12 C 1.38180 * 119.19120 * 0.49007 * 11 10 9 13 13 N 1.31882 * 120.78290 * 359.74704 * 12 11 10 14 14 C 1.31976 * 121.70271 * 0.02562 * 13 12 11 15 15 Cl 1.73603 * 119.63161 * 179.97438 * 14 13 12 16 16 C 1.46967 * 118.81135 * 304.77140 * 5 4 2 17 17 C 1.53370 * 108.63392 * 55.22835 * 16 5 4 18 18 H 1.08998 * 109.75127 * 190.74548 * 17 16 5 19 19 C 1.52992 * 109.61080 * 70.31832 * 17 16 5 20 20 N 1.46966 * 108.63444 * 310.57399 * 17 16 5 21 21 C 1.36937 * 120.59467 * 234.95204 * 20 17 16 22 22 H 1.07998 * 120.00153 * 150.98942 * 21 20 17 23 23 C 1.38811 * 120.00064 * 330.98882 * 21 20 17 24 24 N 1.31626 * 119.99788 * 343.13985 * 23 21 20 25 25 Si 1.86795 * 120.00224 * 163.13271 * 23 21 20 26 26 H 1.48507 * 109.46997 * 60.00200 * 25 23 21 27 27 H 1.48501 * 109.47498 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47301 * 300.00472 * 25 23 21 29 29 H 1.08994 * 109.47221 * 181.87188 * 1 2 3 30 30 H 1.08998 * 109.46702 * 301.87345 * 1 2 3 31 31 H 1.09003 * 109.46924 * 61.86785 * 1 2 3 32 32 H 1.08998 * 109.61118 * 49.42301 * 4 2 1 33 33 H 1.08994 * 109.61009 * 288.91048 * 4 2 1 34 34 H 1.09007 * 109.46343 * 300.00107 * 8 6 5 35 35 H 1.09001 * 109.46953 * 59.99472 * 8 6 5 36 36 H 1.08004 * 120.78002 * 359.97438 * 10 9 8 37 37 H 1.08004 * 120.39910 * 180.23576 * 11 10 9 38 38 H 1.08001 * 119.61111 * 179.76833 * 12 11 10 39 39 H 1.08998 * 109.61199 * 295.48276 * 16 5 4 40 40 H 1.08996 * 109.74929 * 175.05416 * 16 5 4 41 41 H 1.09005 * 109.47362 * 300.85254 * 19 17 16 42 42 H 1.09002 * 109.47208 * 60.85157 * 19 17 16 43 43 H 1.09004 * 109.47411 * 180.85320 * 19 17 16 44 44 H 0.96997 * 119.99671 * 175.69921 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8984 1.0259 0.0000 4 6 2.0447 -0.7317 1.2458 5 7 3.4908 -0.9490 1.0989 6 6 4.3493 -0.5127 2.0417 7 8 5.5406 -0.6974 1.9094 8 6 3.8289 0.2047 3.2607 9 6 4.9838 0.5850 4.1509 10 6 5.4895 1.8753 4.1320 11 6 6.5499 2.1814 4.9715 12 6 7.0709 1.1946 5.7864 13 7 6.5684 -0.0247 5.7756 14 6 5.5568 -0.3511 4.9933 15 17 4.9379 -1.9728 5.0220 16 6 3.9840 -1.6502 -0.0949 17 6 3.4693 -0.9185 -1.3406 18 1 3.6602 -1.5224 -2.2277 19 6 4.1801 0.4297 -1.4746 20 7 2.0232 -0.7012 -1.1937 21 6 1.1515 -1.1392 -2.1547 22 1 0.1428 -1.4141 -1.8838 23 6 1.5642 -1.2298 -3.4769 24 7 2.6503 -0.5998 -3.8719 25 14 0.5785 -2.2459 -4.6955 26 1 -0.8023 -1.7068 -4.7869 27 1 1.2249 -2.1815 -6.0309 28 1 0.5293 -3.6577 -4.2375 29 1 -0.3633 -1.0271 0.0336 30 1 -0.3633 0.5427 0.8727 31 1 -0.3633 0.4846 -0.9063 32 1 1.5383 -1.6922 1.3412 33 1 1.8540 -0.1253 2.1311 34 1 3.2963 1.1045 2.9528 35 1 3.1498 -0.4509 3.8058 36 1 5.0656 2.6256 3.4809 37 1 6.9661 3.1779 4.9852 38 1 7.8992 1.4245 6.4402 39 1 3.6156 -2.6761 -0.0949 40 1 5.0739 -1.6529 -0.0964 41 1 3.9927 1.0294 -0.5839 42 1 5.2522 0.2659 -1.5834 43 1 3.8018 0.9543 -2.3520 44 1 2.9736 -0.7130 -4.7794 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898132788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:35 Heat of formation + Delta-G solvation = 7.626369 kcal Electronic energy + Delta-G solvation = -27857.529215 eV Core-core repulsion = 24028.970777 eV Total energy + Delta-G solvation = -3828.558438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.63394 -40.77502 -38.87067 -37.63682 -35.64748 -34.88605 -34.20399 -33.17588 -32.63406 -29.79309 -29.35078 -27.65416 -26.81973 -25.38468 -24.63165 -23.70158 -22.41552 -21.16823 -20.01255 -18.41116 -18.35747 -17.87842 -17.67985 -16.99793 -16.84595 -16.28314 -15.95292 -15.75303 -15.44634 -15.33929 -14.96039 -14.83180 -14.46649 -14.31682 -14.08575 -13.63102 -13.50435 -13.26337 -13.03202 -12.86790 -12.80086 -12.74828 -12.69725 -12.42112 -12.31721 -12.25023 -12.18292 -11.96046 -11.74200 -11.49357 -11.36214 -11.02540 -10.63748 -10.62492 -10.43278 -9.84677 -9.67260 -8.51889 -7.74932 -5.24497 -0.08567 0.18038 0.84621 1.50062 1.53401 1.57834 1.69741 2.08663 2.56945 2.68303 3.34766 3.36710 3.56302 3.66209 3.72266 3.80474 4.01567 4.18655 4.19852 4.27192 4.39919 4.42251 4.49922 4.52858 4.62013 4.66636 4.74624 4.75401 4.83679 4.95733 4.98370 5.02431 5.12024 5.14065 5.20322 5.36909 5.47006 5.56364 5.61250 5.75088 5.77271 5.87153 6.47680 6.58195 6.71854 7.22502 7.24896 7.93412 8.45393 9.26257 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.022627 B = 0.003091 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.171802 B = 9055.879776 C = 9224.316951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.146 3.854 3 H 0.024 0.976 4 C 0.098 3.902 5 N -0.596 5.596 6 C 0.514 3.486 7 O -0.582 6.582 8 C -0.096 4.096 9 C -0.109 4.109 10 C -0.059 4.059 11 C -0.158 4.158 12 C 0.104 3.896 13 N -0.511 5.511 14 C 0.167 3.833 15 Cl -0.045 7.045 16 C 0.107 3.893 17 C 0.182 3.818 18 H 0.068 0.932 19 C -0.119 4.119 20 N -0.595 5.595 21 C -0.247 4.247 22 H 0.077 0.923 23 C -0.047 4.047 24 N -0.923 5.923 25 Si 0.953 3.047 26 H -0.278 1.278 27 H -0.303 1.303 28 H -0.284 1.284 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.117 0.883 34 H 0.139 0.861 35 H 0.123 0.877 36 H 0.169 0.831 37 H 0.181 0.819 38 H 0.195 0.805 39 H 0.054 0.946 40 H 0.069 0.931 41 H 0.030 0.970 42 H 0.028 0.972 43 H 0.044 0.956 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.644 6.746 19.615 20.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.040 3.960 3 H 0.042 0.958 4 C -0.026 4.026 5 N -0.327 5.327 6 C 0.303 3.697 7 O -0.463 6.463 8 C -0.136 4.136 9 C -0.113 4.113 10 C -0.085 4.085 11 C -0.177 4.177 12 C -0.052 4.052 13 N -0.222 5.222 14 C 0.004 3.996 15 Cl -0.017 7.017 16 C -0.017 4.017 17 C 0.074 3.926 18 H 0.086 0.914 19 C -0.178 4.178 20 N -0.319 5.319 21 C -0.378 4.378 22 H 0.095 0.905 23 C -0.243 4.243 24 N -0.569 5.569 25 Si 0.782 3.218 26 H -0.204 1.204 27 H -0.230 1.230 28 H -0.210 1.210 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.135 0.865 34 H 0.157 0.843 35 H 0.141 0.859 36 H 0.186 0.814 37 H 0.199 0.801 38 H 0.211 0.789 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.049 0.951 42 H 0.047 0.953 43 H 0.063 0.937 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.559 5.899 19.920 20.932 hybrid contribution -0.514 -0.429 -1.942 2.054 sum 2.045 5.470 17.978 18.903 Atomic orbital electron populations 1.21699 0.93480 1.01805 1.01611 1.21040 0.94762 0.93476 0.86738 0.95814 1.22520 0.78651 1.01653 0.99736 1.48006 1.08035 1.56315 1.20385 1.20852 0.85857 0.78679 0.84309 1.90666 1.17366 1.59136 1.79103 1.20740 0.96753 1.03735 0.92394 1.20161 0.99291 0.94464 0.97368 1.21933 0.94880 0.94867 0.96828 1.22629 0.96442 1.02818 0.95823 1.23304 0.98427 0.86119 0.97365 1.66974 1.10287 1.22872 1.22116 1.21590 0.94607 0.87510 0.95938 1.98386 1.84772 1.20937 1.97577 1.22047 0.98759 0.95188 0.85737 1.20517 0.83449 0.94514 0.94089 0.91423 1.21738 0.97411 0.99123 0.99502 1.44363 1.01653 1.65283 1.20555 1.19436 0.96117 1.35657 0.86545 0.90504 1.25655 0.99429 1.00926 0.98263 1.70185 1.26475 1.42992 1.17223 0.85577 0.78523 0.79325 0.78337 1.20363 1.22964 1.21040 0.92814 0.89759 0.93998 0.91101 0.86506 0.84346 0.85932 0.81376 0.80139 0.78873 0.92718 0.91234 0.95075 0.95270 0.93701 0.94671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 7.94 71.98 0.57 -3.25 16 2 C 0.15 5.05 3.23 45.03 0.15 5.19 16 3 H 0.02 0.87 7.40 -2.39 -0.02 0.86 16 4 C 0.10 2.70 5.82 86.41 0.50 3.20 16 5 N -0.60 -19.61 2.59 -818.02 -2.12 -21.73 16 6 C 0.51 16.16 7.47 87.66 0.66 16.81 16 7 O -0.58 -22.96 15.36 -3.04 -0.05 -23.00 16 8 C -0.10 -2.07 3.65 29.10 0.11 -1.97 16 9 C -0.11 -2.53 4.44 -19.75 -0.09 -2.61 16 10 C -0.06 -1.04 9.82 22.46 0.22 -0.82 16 11 C -0.16 -2.23 10.11 22.36 0.23 -2.01 16 12 C 0.10 1.84 11.18 84.67 0.95 2.79 16 13 N -0.51 -13.18 10.34 -186.69 -1.93 -15.11 16 14 C 0.17 4.49 7.16 84.70 0.61 5.09 16 15 Cl -0.05 -1.24 27.50 -2.72 -0.07 -1.31 16 16 C 0.11 4.25 5.96 86.41 0.52 4.76 16 17 C 0.18 8.26 2.35 45.02 0.11 8.37 16 18 H 0.07 3.60 6.04 -2.39 -0.01 3.58 16 19 C -0.12 -5.32 8.94 71.98 0.64 -4.68 16 20 N -0.60 -26.68 2.68 -650.71 -1.75 -28.42 16 21 C -0.25 -12.30 8.55 84.03 0.72 -11.58 16 22 H 0.08 3.66 6.26 -2.91 -0.02 3.65 16 23 C -0.05 -2.47 4.91 84.86 0.42 -2.05 16 24 N -0.92 -51.56 10.11 21.65 0.22 -51.34 16 25 Si 0.95 43.23 29.59 68.60 2.03 45.26 16 26 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 27 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 28 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 29 H 0.05 1.62 7.47 -2.39 -0.02 1.60 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.04 1.46 7.58 -2.39 -0.02 1.44 16 32 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16 33 H 0.12 2.16 5.91 -2.39 -0.01 2.15 16 34 H 0.14 2.10 7.61 -2.38 -0.02 2.08 16 35 H 0.12 2.26 7.14 -2.39 -0.02 2.24 16 36 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 37 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 38 H 0.19 1.96 8.06 -2.91 -0.02 1.93 16 39 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.07 2.89 6.98 -2.39 -0.02 2.88 16 41 H 0.03 1.28 7.02 -2.38 -0.02 1.26 16 42 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.04 2.27 7.15 -2.38 -0.02 2.25 16 44 H 0.24 13.59 8.32 -92.71 -0.77 12.81 16 Total: -1.00 -70.10 362.63 3.64 -66.46 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 1.02 Total: 11.95 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: 6.29 Total: 17.26 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -5.58 Total: -116.61 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.05 Total: -23.00 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.07 Total: -1.31 kcal Total: -70.10 3.64 -66.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898132788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.086 kcal (2) G-P(sol) polarization free energy of solvation -70.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds