Wall clock time and date at job start Tue Mar 31 2020 20:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.74513 * 2 1 4 4 C 1.53365 * 109.61112 * 239.57258 * 2 1 3 5 5 N 1.46962 * 108.63842 * 190.83215 * 4 2 1 6 6 C 1.34773 * 120.60063 * 235.20582 * 5 4 2 7 7 O 1.21285 * 119.99327 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00199 * 179.97438 * 6 5 4 9 9 C 1.50701 * 109.46900 * 180.02562 * 8 6 5 10 10 C 1.38606 * 120.42667 * 99.99765 * 9 8 6 11 11 C 1.38664 * 118.43920 * 179.72159 * 10 9 8 12 12 C 1.38197 * 119.19235 * 0.25700 * 11 10 9 13 13 N 1.31874 * 120.77681 * 359.97438 * 12 11 10 14 14 C 1.31978 * 121.71257 * 0.02562 * 13 12 11 15 15 Cl 1.73592 * 119.63754 * 179.97438 * 14 13 12 16 16 C 1.46975 * 118.80757 * 55.47661 * 5 4 2 17 17 C 1.53810 * 108.39759 * 304.48689 * 16 5 4 18 18 H 1.09004 * 109.73962 * 289.84688 * 17 16 5 19 19 C 1.53002 * 109.67414 * 169.38847 * 17 16 5 20 20 N 1.46960 * 108.58071 * 49.63938 * 17 16 5 21 21 C 1.36935 * 120.59464 * 124.62517 * 20 17 16 22 22 H 1.07993 * 120.00190 * 307.12675 * 21 20 17 23 23 C 1.38813 * 120.00031 * 127.12963 * 21 20 17 24 24 N 1.31620 * 119.99904 * 337.45925 * 23 21 20 25 25 Si 1.86804 * 119.99981 * 157.45988 * 23 21 20 26 26 H 1.48505 * 109.46962 * 60.00333 * 25 23 21 27 27 H 1.48496 * 109.46921 * 179.97438 * 25 23 21 28 28 H 1.48490 * 109.47251 * 299.99804 * 25 23 21 29 29 H 1.08999 * 109.47540 * 188.79808 * 1 2 3 30 30 H 1.08999 * 109.47326 * 308.80521 * 1 2 3 31 31 H 1.09000 * 109.46719 * 68.79993 * 1 2 3 32 32 H 1.09000 * 109.61076 * 71.08702 * 4 2 1 33 33 H 1.09006 * 109.74974 * 310.66265 * 4 2 1 34 34 H 1.08993 * 109.47163 * 60.00150 * 8 6 5 35 35 H 1.08996 * 109.47025 * 299.99350 * 8 6 5 36 36 H 1.08003 * 120.78210 * 0.02562 * 10 9 8 37 37 H 1.08003 * 120.41070 * 180.23008 * 11 10 9 38 38 H 1.07994 * 119.61128 * 179.97438 * 12 11 10 39 39 H 1.09003 * 109.60422 * 64.26976 * 16 5 4 40 40 H 1.08996 * 109.60683 * 184.77883 * 16 5 4 41 41 H 1.09009 * 109.46819 * 304.36792 * 19 17 16 42 42 H 1.09000 * 109.47395 * 64.36183 * 19 17 16 43 43 H 1.08996 * 109.47273 * 184.36557 * 19 17 16 44 44 H 0.96998 * 119.99952 * 175.07684 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0258 0.0000 4 6 2.0448 -0.7317 -1.2457 5 7 3.4908 -0.9489 -1.0988 6 6 4.3493 -0.5134 -2.0421 7 8 3.9304 0.0633 -3.0234 8 6 5.8295 -0.7429 -1.8775 9 6 6.5622 -0.1637 -3.0602 10 6 7.1808 1.0731 -2.9657 11 6 7.8484 1.5642 -4.0774 12 6 7.8706 0.8125 -5.2369 13 7 7.2672 -0.3588 -5.2934 14 6 6.6224 -0.8578 -4.2556 15 17 5.8464 -2.4048 -4.3899 16 6 3.9835 -1.6550 0.0923 17 6 3.4692 -0.9184 1.3407 18 1 3.9756 0.0421 1.4362 19 6 3.7372 -1.7661 2.5859 20 7 2.0232 -0.7012 1.1938 21 6 1.1509 -1.1445 2.1518 22 1 1.1781 -2.1758 2.4711 23 6 0.2317 -0.2684 2.7124 24 7 0.4566 1.0282 2.6842 25 14 -1.3244 -0.9294 3.5068 26 1 -0.9622 -1.8346 4.6270 27 1 -2.1336 0.2018 4.0270 28 1 -2.1140 -1.6810 2.4986 29 1 -0.3634 -1.0155 0.1572 30 1 -0.3634 0.6440 0.8008 31 1 -0.3633 0.3716 -0.9581 32 1 1.8541 -0.1252 -2.1311 33 1 1.5387 -1.6921 -1.3442 34 1 6.0266 -1.8131 -1.8161 35 1 6.1732 -0.2571 -0.9643 36 1 7.1479 1.6388 -2.0462 37 1 8.3446 2.5226 -4.0379 38 1 8.3882 1.1886 -6.1069 39 1 3.6119 -2.6798 0.0898 40 1 5.0735 -1.6584 0.0907 41 1 3.2869 -2.7506 2.4590 42 1 4.8125 -1.8740 2.7275 43 1 3.3031 -1.2777 3.4583 44 1 -0.2173 1.6445 3.0112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898132789.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:41 Heat of formation + Delta-G solvation = 25.725068 kcal Electronic energy + Delta-G solvation = -27693.427303 eV Core-core repulsion = 23865.653684 eV Total energy + Delta-G solvation = -3827.773620 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.64518 -39.49690 -37.35150 -36.68451 -34.28944 -33.86756 -32.82690 -31.94470 -31.34990 -28.49110 -27.71274 -26.13779 -25.48709 -23.84009 -23.75652 -22.53535 -20.43406 -19.84751 -18.73291 -17.53823 -17.08000 -16.93892 -16.12222 -15.86736 -15.07773 -15.02940 -14.81371 -14.52085 -14.42463 -13.99209 -13.72811 -13.40173 -13.34902 -12.97966 -12.88610 -12.24492 -12.11614 -11.94063 -11.76207 -11.63455 -11.52120 -11.39734 -11.22340 -10.90169 -10.87632 -10.59943 -10.51137 -10.35929 -10.09446 -10.08140 -9.95672 -9.79475 -9.76124 -9.43597 -8.96822 -8.38947 -7.99663 -6.49574 -5.80700 -3.62574 0.73811 0.97728 1.76085 2.93260 3.27963 3.28989 3.36320 3.39093 3.58692 4.18417 4.37789 4.49420 4.59480 4.71413 4.80931 4.98509 5.08139 5.13330 5.19940 5.30976 5.45698 5.62195 5.65440 5.77165 5.87820 5.90591 6.02346 6.13522 6.24407 6.26613 6.27580 6.34874 6.44750 6.54749 6.73741 6.84378 6.95003 7.01422 7.16793 7.39262 7.53040 7.62683 7.77852 7.87296 8.51128 8.52291 9.09768 9.63984 10.40357 11.07814 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.023011 B = 0.002989 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.508263 B = 9364.788678 C = 9404.197757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.184 3.816 3 H 0.031 0.969 4 C 0.095 3.905 5 N -0.595 5.595 6 C 0.515 3.485 7 O -0.547 6.547 8 C -0.104 4.104 9 C -0.093 4.093 10 C -0.053 4.053 11 C -0.170 4.170 12 C 0.112 3.888 13 N -0.480 5.480 14 C 0.192 3.808 15 Cl -0.028 7.028 16 C 0.090 3.910 17 C 0.156 3.844 18 H 0.029 0.971 19 C -0.129 4.129 20 N -0.576 5.576 21 C -0.268 4.268 22 H 0.054 0.946 23 C 0.040 3.960 24 N -0.870 5.870 25 Si 0.880 3.120 26 H -0.278 1.278 27 H -0.290 1.290 28 H -0.278 1.278 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.024 0.976 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.164 0.836 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.051 0.949 42 H 0.036 0.964 43 H 0.070 0.930 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.445 -1.944 -8.794 17.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.077 3.923 3 H 0.049 0.951 4 C -0.028 4.028 5 N -0.326 5.326 6 C 0.302 3.698 7 O -0.425 6.425 8 C -0.145 4.145 9 C -0.096 4.096 10 C -0.079 4.079 11 C -0.189 4.189 12 C -0.045 4.045 13 N -0.191 5.191 14 C 0.028 3.972 15 Cl 0.000 7.000 16 C -0.034 4.034 17 C 0.049 3.951 18 H 0.047 0.953 19 C -0.187 4.187 20 N -0.300 5.300 21 C -0.397 4.397 22 H 0.071 0.929 23 C -0.163 4.163 24 N -0.509 5.509 25 Si 0.708 3.292 26 H -0.204 1.204 27 H -0.215 1.215 28 H -0.204 1.204 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.043 0.957 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.163 0.837 37 H 0.160 0.840 38 H 0.181 0.819 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.089 0.911 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.102 -2.106 -9.954 17.389 hybrid contribution -0.987 0.129 1.166 1.533 sum 13.115 -1.977 -8.788 15.910 Atomic orbital electron populations 1.22003 0.95006 1.02959 1.00227 1.20588 0.93835 0.93475 0.84372 0.95131 1.22486 0.78482 1.00976 1.00886 1.47993 1.07629 1.56208 1.20795 1.20144 0.87560 0.79237 0.82897 1.90681 1.79020 1.42727 1.30069 1.20711 0.93128 1.03602 0.97010 1.20040 0.99297 0.95539 0.94745 1.21512 0.93620 0.93220 0.99574 1.22188 1.01036 1.01735 0.93982 1.22646 0.95309 0.88810 0.97770 1.67003 1.08590 1.13955 1.29522 1.21430 0.95595 0.90021 0.90171 1.98405 1.78152 1.25378 1.98047 1.22626 0.97869 0.96552 0.86389 1.20935 0.87729 0.95312 0.91169 0.95319 1.21675 0.98176 1.00007 0.98813 1.43973 0.99274 1.67524 1.19219 1.18606 1.13114 0.92303 1.15685 0.92875 1.25480 1.00335 0.95151 0.95328 1.70199 1.32649 1.01480 1.46540 0.86778 0.84294 0.78460 0.79690 1.20416 1.21536 1.20379 0.92694 0.89282 0.95700 0.90316 0.92075 0.87447 0.87322 0.83745 0.83952 0.81913 0.91469 0.91114 0.92992 0.94464 0.91073 0.93451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 7.81 37.16 0.29 -2.89 16 2 C 0.18 4.07 3.26 -67.49 -0.22 3.85 16 3 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.10 1.86 5.89 -3.60 -0.02 1.84 16 5 N -0.60 -10.41 2.94 -172.21 -0.51 -10.92 16 6 C 0.51 8.65 7.46 -10.99 -0.08 8.57 16 7 O -0.55 -10.99 15.35 5.55 0.09 -10.90 16 8 C -0.10 -1.30 3.65 -29.04 -0.11 -1.41 16 9 C -0.09 -1.19 4.44 -104.44 -0.46 -1.66 16 10 C -0.05 -0.56 9.82 -39.29 -0.39 -0.95 16 11 C -0.17 -1.53 10.11 -39.44 -0.40 -1.93 16 12 C 0.11 1.14 11.18 -17.55 -0.20 0.94 16 13 N -0.48 -6.51 10.34 -10.36 -0.11 -6.62 16 14 C 0.19 2.71 7.15 -17.44 -0.12 2.58 16 15 Cl -0.03 -0.40 27.49 -51.86 -1.43 -1.82 16 16 C 0.09 1.42 5.85 -3.36 -0.02 1.40 16 17 C 0.16 2.97 3.66 -67.26 -0.25 2.72 16 18 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 19 C -0.13 -2.23 8.19 37.16 0.30 -1.92 16 20 N -0.58 -13.09 2.75 -156.77 -0.43 -13.53 16 21 C -0.27 -6.60 6.55 -15.06 -0.10 -6.70 16 22 H 0.05 1.33 7.27 -52.49 -0.38 0.95 16 23 C 0.04 1.01 3.19 -17.43 -0.06 0.96 16 24 N -0.87 -23.45 11.76 55.49 0.65 -22.79 16 25 Si 0.88 20.02 29.61 -169.99 -5.03 14.98 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H 0.05 1.22 7.48 -51.93 -0.39 0.84 16 30 H 0.09 2.18 4.99 -51.93 -0.26 1.92 16 31 H 0.02 0.48 8.13 -51.93 -0.42 0.06 16 32 H 0.08 1.57 6.99 -51.93 -0.36 1.21 16 33 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 34 H 0.11 1.19 7.14 -51.93 -0.37 0.82 16 35 H 0.11 1.11 7.62 -51.93 -0.40 0.72 16 36 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 37 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 38 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 40 H 0.07 0.86 5.91 -51.93 -0.31 0.56 16 41 H 0.05 0.89 7.66 -51.92 -0.40 0.49 16 42 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 1.42 7.55 -51.93 -0.39 1.03 16 44 H 0.26 6.72 8.32 -40.82 -0.34 6.38 16 LS Contribution 363.71 15.07 5.48 5.48 Total: -1.00 -30.70 363.71 -9.30 -40.00 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.19 Total: 0.71 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -1.82 Total: 5.40 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.39 Total: -53.86 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.98 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.43 Total: -1.82 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.70 -9.30 -40.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898132789.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.728 kcal (2) G-P(sol) polarization free energy of solvation -30.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds