Wall clock time and date at job start Tue Mar 31 2020 20:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.74513 * 2 1 4 4 C 1.53365 * 109.61112 * 239.57258 * 2 1 3 5 5 N 1.46962 * 108.63842 * 190.83215 * 4 2 1 6 6 C 1.34773 * 120.60063 * 235.20582 * 5 4 2 7 7 O 1.21285 * 119.99327 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00199 * 179.97438 * 6 5 4 9 9 C 1.50701 * 109.46900 * 180.02562 * 8 6 5 10 10 C 1.38606 * 120.42667 * 99.99765 * 9 8 6 11 11 C 1.38664 * 118.43920 * 179.72159 * 10 9 8 12 12 C 1.38197 * 119.19235 * 0.25700 * 11 10 9 13 13 N 1.31874 * 120.77681 * 359.97438 * 12 11 10 14 14 C 1.31978 * 121.71257 * 0.02562 * 13 12 11 15 15 Cl 1.73592 * 119.63754 * 179.97438 * 14 13 12 16 16 C 1.46975 * 118.80757 * 55.47661 * 5 4 2 17 17 C 1.53810 * 108.39759 * 304.48689 * 16 5 4 18 18 H 1.09004 * 109.73962 * 289.84688 * 17 16 5 19 19 C 1.53002 * 109.67414 * 169.38847 * 17 16 5 20 20 N 1.46960 * 108.58071 * 49.63938 * 17 16 5 21 21 C 1.36935 * 120.59464 * 124.62517 * 20 17 16 22 22 H 1.07993 * 120.00190 * 307.12675 * 21 20 17 23 23 C 1.38813 * 120.00031 * 127.12963 * 21 20 17 24 24 N 1.31620 * 119.99904 * 337.45925 * 23 21 20 25 25 Si 1.86804 * 119.99981 * 157.45988 * 23 21 20 26 26 H 1.48505 * 109.46962 * 60.00333 * 25 23 21 27 27 H 1.48496 * 109.46921 * 179.97438 * 25 23 21 28 28 H 1.48490 * 109.47251 * 299.99804 * 25 23 21 29 29 H 1.08999 * 109.47540 * 188.79808 * 1 2 3 30 30 H 1.08999 * 109.47326 * 308.80521 * 1 2 3 31 31 H 1.09000 * 109.46719 * 68.79993 * 1 2 3 32 32 H 1.09000 * 109.61076 * 71.08702 * 4 2 1 33 33 H 1.09006 * 109.74974 * 310.66265 * 4 2 1 34 34 H 1.08993 * 109.47163 * 60.00150 * 8 6 5 35 35 H 1.08996 * 109.47025 * 299.99350 * 8 6 5 36 36 H 1.08003 * 120.78210 * 0.02562 * 10 9 8 37 37 H 1.08003 * 120.41070 * 180.23008 * 11 10 9 38 38 H 1.07994 * 119.61128 * 179.97438 * 12 11 10 39 39 H 1.09003 * 109.60422 * 64.26976 * 16 5 4 40 40 H 1.08996 * 109.60683 * 184.77883 * 16 5 4 41 41 H 1.09009 * 109.46819 * 304.36792 * 19 17 16 42 42 H 1.09000 * 109.47395 * 64.36183 * 19 17 16 43 43 H 1.08996 * 109.47273 * 184.36557 * 19 17 16 44 44 H 0.96998 * 119.99952 * 175.07684 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0258 0.0000 4 6 2.0448 -0.7317 -1.2457 5 7 3.4908 -0.9489 -1.0988 6 6 4.3493 -0.5134 -2.0421 7 8 3.9304 0.0633 -3.0234 8 6 5.8295 -0.7429 -1.8775 9 6 6.5622 -0.1637 -3.0602 10 6 7.1808 1.0731 -2.9657 11 6 7.8484 1.5642 -4.0774 12 6 7.8706 0.8125 -5.2369 13 7 7.2672 -0.3588 -5.2934 14 6 6.6224 -0.8578 -4.2556 15 17 5.8464 -2.4048 -4.3899 16 6 3.9835 -1.6550 0.0923 17 6 3.4692 -0.9184 1.3407 18 1 3.9756 0.0421 1.4362 19 6 3.7372 -1.7661 2.5859 20 7 2.0232 -0.7012 1.1938 21 6 1.1509 -1.1445 2.1518 22 1 1.1781 -2.1758 2.4711 23 6 0.2317 -0.2684 2.7124 24 7 0.4566 1.0282 2.6842 25 14 -1.3244 -0.9294 3.5068 26 1 -0.9622 -1.8346 4.6270 27 1 -2.1336 0.2018 4.0270 28 1 -2.1140 -1.6810 2.4986 29 1 -0.3634 -1.0155 0.1572 30 1 -0.3634 0.6440 0.8008 31 1 -0.3633 0.3716 -0.9581 32 1 1.8541 -0.1252 -2.1311 33 1 1.5387 -1.6921 -1.3442 34 1 6.0266 -1.8131 -1.8161 35 1 6.1732 -0.2571 -0.9643 36 1 7.1479 1.6388 -2.0462 37 1 8.3446 2.5226 -4.0379 38 1 8.3882 1.1886 -6.1069 39 1 3.6119 -2.6798 0.0898 40 1 5.0735 -1.6584 0.0907 41 1 3.2869 -2.7506 2.4590 42 1 4.8125 -1.8740 2.7275 43 1 3.3031 -1.2777 3.4583 44 1 -0.2173 1.6445 3.0112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898132789.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:40 Heat of formation + Delta-G solvation = 7.545597 kcal Electronic energy + Delta-G solvation = -27694.215625 eV Core-core repulsion = 23865.653684 eV Total energy + Delta-G solvation = -3828.561941 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.63078 -40.74327 -38.89581 -37.64494 -35.89297 -34.88494 -34.32962 -33.24825 -32.66382 -29.74584 -29.25563 -27.53585 -27.08479 -25.37896 -24.63882 -23.53353 -22.01947 -21.47988 -20.12187 -18.43194 -18.36639 -17.89149 -17.77467 -17.11532 -16.76414 -16.30818 -16.09053 -15.96888 -15.55021 -15.34381 -14.95095 -14.84372 -14.57616 -14.17780 -14.09572 -13.63408 -13.38017 -13.29990 -13.21445 -12.93900 -12.83498 -12.70988 -12.59701 -12.47984 -12.32257 -12.22366 -12.20817 -12.10093 -11.71610 -11.62741 -11.48095 -11.06536 -10.67225 -10.63843 -10.16518 -9.85323 -9.62474 -8.39367 -7.68377 -5.57510 -0.09550 0.16971 0.83702 1.46026 1.50982 1.54787 1.65234 2.05752 2.51343 2.67107 3.23357 3.33478 3.53774 3.64026 3.71029 3.79397 4.00627 4.14335 4.18327 4.30216 4.38406 4.40994 4.47951 4.52642 4.54148 4.62920 4.69816 4.80278 4.85761 4.89391 4.98181 5.01422 5.02851 5.13083 5.21259 5.41511 5.52049 5.55786 5.58396 5.71095 5.75646 5.84591 6.53549 6.58581 6.70919 7.19278 7.23664 7.80428 8.52645 9.13301 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.023011 B = 0.002989 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.508263 B = 9364.788678 C = 9404.197757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.187 3.813 3 H -0.004 1.004 4 C 0.109 3.891 5 N -0.602 5.602 6 C 0.513 3.487 7 O -0.583 6.583 8 C -0.096 4.096 9 C -0.110 4.110 10 C -0.060 4.060 11 C -0.158 4.158 12 C 0.105 3.895 13 N -0.511 5.511 14 C 0.167 3.833 15 Cl -0.044 7.044 16 C 0.100 3.900 17 C 0.147 3.853 18 H 0.013 0.987 19 C -0.119 4.119 20 N -0.591 5.591 21 C -0.261 4.261 22 H 0.052 0.948 23 C 0.002 3.998 24 N -0.904 5.904 25 Si 0.929 3.071 26 H -0.273 1.273 27 H -0.297 1.297 28 H -0.275 1.275 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.124 0.876 35 H 0.137 0.863 36 H 0.168 0.832 37 H 0.181 0.819 38 H 0.195 0.805 39 H 0.073 0.927 40 H 0.115 0.885 41 H 0.052 0.948 42 H 0.078 0.922 43 H 0.036 0.964 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.757 -2.349 -9.029 19.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.080 3.920 3 H 0.013 0.987 4 C -0.016 4.016 5 N -0.333 5.333 6 C 0.303 3.697 7 O -0.464 6.464 8 C -0.136 4.136 9 C -0.114 4.114 10 C -0.086 4.086 11 C -0.177 4.177 12 C -0.051 4.051 13 N -0.222 5.222 14 C 0.004 3.996 15 Cl -0.016 7.016 16 C -0.024 4.024 17 C 0.041 3.959 18 H 0.031 0.969 19 C -0.177 4.177 20 N -0.316 5.316 21 C -0.391 4.391 22 H 0.070 0.930 23 C -0.198 4.198 24 N -0.545 5.545 25 Si 0.756 3.244 26 H -0.199 1.199 27 H -0.224 1.224 28 H -0.201 1.201 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.142 0.858 35 H 0.155 0.845 36 H 0.185 0.815 37 H 0.199 0.801 38 H 0.212 0.788 39 H 0.091 0.909 40 H 0.133 0.867 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.056 0.944 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 16.439 -2.547 -10.179 19.502 hybrid contribution -1.607 0.346 1.173 2.019 sum 14.832 -2.201 -9.007 17.492 Atomic orbital electron populations 1.21880 0.95273 1.01982 1.00366 1.20437 0.93737 0.92048 0.85741 0.98663 1.22095 0.80362 1.00370 0.98764 1.48084 1.06796 1.56622 1.21754 1.20888 0.89195 0.77838 0.81820 1.90661 1.79996 1.44183 1.31511 1.20730 0.89449 1.05068 0.98327 1.20164 1.00263 0.96568 0.94384 1.21933 0.93052 0.92479 1.01122 1.22633 0.99630 1.02686 0.92750 1.23316 0.94507 0.87832 0.99488 1.66974 1.09644 1.15642 1.29920 1.21584 0.96798 0.90139 0.91077 1.98385 1.78599 1.26466 1.98129 1.22605 1.00335 0.95743 0.83672 1.21153 0.85415 0.95469 0.93899 0.96919 1.21573 1.00733 0.99015 0.96339 1.44218 1.00925 1.67385 1.19067 1.18750 1.13220 0.92087 1.15089 0.93037 1.25969 1.02454 0.95165 0.96166 1.70296 1.33185 1.02465 1.48572 0.85992 0.81706 0.77596 0.79056 1.19875 1.22387 1.20083 0.93205 0.91721 0.93768 0.91202 0.91782 0.85835 0.84474 0.81464 0.80123 0.78788 0.90855 0.86684 0.92857 0.90282 0.94436 0.94107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.16 7.81 71.98 0.56 -5.59 16 2 C 0.19 8.43 3.26 45.03 0.15 8.58 16 3 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 4 C 0.11 4.22 5.89 86.41 0.51 4.73 16 5 N -0.60 -20.19 2.94 -817.15 -2.40 -22.59 16 6 C 0.51 16.46 7.46 87.66 0.65 17.11 16 7 O -0.58 -23.17 15.35 -3.05 -0.05 -23.22 16 8 C -0.10 -2.13 3.65 29.10 0.11 -2.02 16 9 C -0.11 -2.60 4.44 -19.75 -0.09 -2.68 16 10 C -0.06 -1.08 9.82 22.46 0.22 -0.86 16 11 C -0.16 -2.27 10.11 22.36 0.23 -2.05 16 12 C 0.11 1.86 11.18 84.68 0.95 2.81 16 13 N -0.51 -13.18 10.34 -186.69 -1.93 -15.11 16 14 C 0.17 4.53 7.15 84.70 0.61 5.13 16 15 Cl -0.04 -1.21 27.49 -2.72 -0.07 -1.29 16 16 C 0.10 2.86 5.85 86.56 0.51 3.37 16 17 C 0.15 5.41 3.66 45.18 0.17 5.57 16 18 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 19 C -0.12 -3.88 8.19 71.98 0.59 -3.29 16 20 N -0.59 -26.94 2.75 -649.90 -1.79 -28.73 16 21 C -0.26 -12.95 6.55 84.03 0.55 -12.40 16 22 H 0.05 2.56 7.27 -2.91 -0.02 2.54 16 23 C 0.00 0.11 3.19 84.86 0.27 0.38 16 24 N -0.90 -50.13 11.76 21.65 0.25 -49.88 16 25 Si 0.93 41.60 29.61 68.60 2.03 43.63 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 27 H -0.30 -13.61 7.11 99.48 0.71 -12.91 16 28 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 29 H 0.05 2.24 7.48 -2.39 -0.02 2.22 16 30 H 0.06 3.26 4.99 -2.39 -0.01 3.25 16 31 H 0.04 1.74 8.13 -2.39 -0.02 1.73 16 32 H 0.07 2.82 6.99 -2.39 -0.02 2.81 16 33 H 0.06 2.44 8.12 -2.38 -0.02 2.42 16 34 H 0.12 2.34 7.14 -2.39 -0.02 2.32 16 35 H 0.14 2.23 7.62 -2.39 -0.02 2.21 16 36 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 37 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 38 H 0.20 1.96 8.06 -2.91 -0.02 1.93 16 39 H 0.07 2.07 8.12 -2.39 -0.02 2.05 16 40 H 0.12 2.28 5.91 -2.39 -0.01 2.27 16 41 H 0.05 1.71 7.66 -2.38 -0.02 1.69 16 42 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.04 1.46 7.55 -2.39 -0.02 1.45 16 44 H 0.25 13.60 8.32 -92.71 -0.77 12.82 16 Total: -1.00 -69.81 363.71 3.02 -66.79 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 1.01 Total: 11.61 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: 5.97 Total: 18.78 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -5.87 Total: -116.32 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.05 Total: -23.22 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.07 Total: -1.29 kcal Total: -69.81 3.02 -66.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898132789.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.339 kcal (2) G-P(sol) polarization free energy of solvation -69.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds