Wall clock time and date at job start Tue Mar 31 2020 21:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46915 * 2 1 4 4 C 1.45752 * 117.94520 * 89.99934 * 3 2 1 5 5 C 1.52925 * 110.32049 * 199.15383 * 4 3 2 6 6 C 1.53266 * 108.71493 * 308.95081 * 5 4 3 7 7 C 1.53069 * 108.24899 * 67.81107 * 6 5 4 8 8 H 1.09003 * 109.39981 * 71.16577 * 7 6 5 9 9 N 1.46497 * 109.40194 * 190.90179 * 7 6 5 10 10 C 1.34773 * 120.00244 * 205.42679 * 9 7 6 11 11 O 1.21584 * 120.00023 * 0.02562 * 10 9 7 12 12 N 1.34773 * 120.00186 * 180.02562 * 10 9 7 13 13 C 1.46507 * 120.00371 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.46368 * 34.99914 * 13 12 10 15 15 C 1.50701 * 109.47166 * 154.99974 * 13 12 10 16 16 H 1.07996 * 119.99783 * 0.02562 * 15 13 12 17 17 C 1.37882 * 119.99517 * 180.02562 * 15 13 12 18 18 N 1.31507 * 119.99936 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99589 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47079 * 90.00170 * 19 17 15 21 21 H 1.48499 * 109.46885 * 210.00032 * 19 17 15 22 22 H 1.48499 * 109.47414 * 330.00573 * 19 17 15 23 23 C 1.52993 * 109.47022 * 275.00440 * 13 12 10 24 24 F 1.39901 * 109.47662 * 59.99502 * 23 13 12 25 25 F 1.39897 * 109.47136 * 179.97438 * 23 13 12 26 26 F 1.39906 * 109.47334 * 299.99502 * 23 13 12 27 27 C 1.33349 * 117.94783 * 269.97856 * 3 2 1 28 28 O 1.21287 * 118.24620 * 357.82047 * 27 3 2 29 29 H 1.08994 * 109.47477 * 299.99757 * 1 2 3 30 30 H 1.09002 * 109.47002 * 60.00188 * 1 2 3 31 31 H 1.09000 * 109.46954 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47276 * 239.99947 * 2 1 3 33 33 H 1.08998 * 109.47487 * 119.99872 * 2 1 3 34 34 H 1.09002 * 109.30196 * 319.36523 * 4 3 2 35 35 H 1.08998 * 109.29923 * 78.94655 * 4 3 2 36 36 H 1.09004 * 109.60143 * 68.89990 * 5 4 3 37 37 H 1.09000 * 109.60431 * 189.38543 * 5 4 3 38 38 H 1.09008 * 109.81606 * 308.10590 * 6 5 4 39 39 H 1.08997 * 109.73811 * 187.48191 * 6 5 4 40 40 H 0.97001 * 119.99650 * 25.44057 * 9 7 6 41 41 H 0.97001 * 120.00262 * 0.02562 * 12 10 9 42 42 H 0.97008 * 119.99662 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2459 2.0253 1.2876 5 6 2.2841 3.5450 1.1219 6 6 3.2674 3.8927 -0.0013 7 6 2.6796 3.3948 -1.3240 8 1 1.8293 4.0184 -1.6000 9 7 3.7006 3.4761 -2.3714 10 6 3.3334 3.5952 -3.6627 11 8 2.1548 3.6356 -3.9583 12 7 4.2727 3.6695 -4.6263 13 6 3.8736 3.7996 -6.0300 14 1 2.9719 4.4084 -6.0963 15 6 4.9830 4.4582 -6.8088 16 1 5.8943 4.7503 -6.3083 17 6 4.8344 4.6878 -8.1602 18 7 3.7244 4.3326 -8.7693 19 14 6.2098 5.5036 -9.1256 20 1 7.1270 4.4630 -9.6559 21 1 5.6316 6.2756 -10.2547 22 1 6.9643 6.4205 -8.2339 23 6 3.5960 2.4121 -6.6118 24 9 2.5661 1.8006 -5.8889 25 9 3.2143 2.5363 -7.9520 26 9 4.7532 1.6305 -6.5267 27 6 2.2270 1.9704 -1.1780 28 8 2.0410 1.3211 -2.1854 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.4407 1.7575 1.9717 35 1 3.1960 1.6836 1.6982 36 1 1.2893 3.9101 0.8665 37 1 2.6179 4.0060 2.0515 38 1 4.2248 3.4047 0.1816 39 1 3.4085 4.9726 -0.0458 40 1 4.6410 3.4440 -2.1356 41 1 5.2131 3.6369 -4.3906 42 1 3.6200 4.4938 -9.7202 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932889177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:55 Heat of formation + Delta-G solvation = -222.957658 kcal Electronic energy + Delta-G solvation = -31389.095873 eV Core-core repulsion = 26567.972656 eV Total energy + Delta-G solvation = -4821.123217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -50.40519 -48.03941 -47.72566 -41.90393 -40.53260 -37.53804 -36.97277 -36.15194 -34.57320 -33.91428 -31.11461 -30.54962 -29.14288 -26.57833 -25.58252 -24.56943 -23.36627 -22.76977 -21.85834 -20.24982 -19.59215 -18.88917 -18.73916 -18.55981 -18.14904 -17.65272 -17.51888 -17.22170 -16.69582 -16.00950 -15.68500 -15.31206 -15.20343 -15.14409 -14.93001 -14.82068 -14.68110 -14.48055 -14.44160 -14.28076 -14.24847 -14.03172 -13.86855 -13.41795 -13.14338 -12.99947 -12.83773 -12.72838 -12.65533 -12.45582 -12.20313 -12.19228 -11.95641 -11.78441 -11.55499 -11.26672 -11.10240 -10.68603 -10.20318 -9.78677 -9.66681 -8.19780 -6.51435 1.35417 1.47586 1.49023 1.60625 1.83818 2.04415 2.28044 2.38535 2.60064 2.95580 3.29146 3.57459 3.68281 3.79633 3.85456 3.89564 4.04017 4.14695 4.18804 4.24614 4.37111 4.47166 4.58565 4.65860 4.80546 4.84987 4.89837 5.01215 5.08446 5.09866 5.23081 5.29871 5.43876 5.44962 5.52889 5.58433 5.66105 6.08106 6.48684 6.54053 7.14886 7.19792 7.25537 7.68917 8.73533 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.021649 B = 0.003372 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.062409 B = 8300.709930 C = 9113.411368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.099 3.901 3 N -0.600 5.600 4 C 0.103 3.897 5 C -0.127 4.127 6 C -0.117 4.117 7 C 0.155 3.845 8 H 0.092 0.908 9 N -0.717 5.717 10 C 0.700 3.300 11 O -0.619 6.619 12 N -0.720 5.720 13 C 0.273 3.727 14 H 0.044 0.956 15 C -0.560 4.560 16 H 0.095 0.905 17 C 0.012 3.988 18 N -0.877 5.877 19 Si 0.988 3.012 20 H -0.275 1.275 21 H -0.282 1.282 22 H -0.253 1.253 23 C 0.409 3.591 24 F -0.220 7.220 25 F -0.151 7.151 26 F -0.205 7.205 27 C 0.485 3.515 28 O -0.583 6.583 29 H 0.077 0.923 30 H 0.019 0.981 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.129 0.871 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.414 0.586 41 H 0.409 0.591 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.123 -1.412 25.354 25.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.334 5.334 4 C -0.018 4.018 5 C -0.165 4.165 6 C -0.155 4.155 7 C 0.045 3.955 8 H 0.110 0.890 9 N -0.374 5.374 10 C 0.400 3.600 11 O -0.498 6.498 12 N -0.374 5.374 13 C 0.165 3.835 14 H 0.062 0.938 15 C -0.596 4.596 16 H 0.113 0.887 17 C -0.193 4.193 18 N -0.511 5.511 19 Si 0.811 3.189 20 H -0.201 1.201 21 H -0.208 1.208 22 H -0.177 1.177 23 C 0.353 3.647 24 F -0.202 7.202 25 F -0.133 7.133 26 F -0.187 7.187 27 C 0.271 3.729 28 O -0.462 6.462 29 H 0.096 0.904 30 H 0.038 0.962 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.133 0.867 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.147 0.853 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.251 0.749 41 H 0.245 0.755 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.844 -1.709 24.381 24.456 hybrid contribution 0.697 -0.424 -1.257 1.499 sum 1.541 -2.133 23.124 23.273 Atomic orbital electron populations 1.22037 0.95559 1.02834 1.01312 1.21543 0.94840 0.82756 1.03224 1.47625 1.64829 1.14639 1.06291 1.21838 1.03752 0.93350 0.82834 1.21897 0.99910 0.94480 1.00252 1.21996 1.00309 1.03751 0.89448 1.20807 0.93169 0.91738 0.89754 0.88974 1.44625 1.10101 1.79525 1.03195 1.16198 0.84893 0.77101 0.81790 1.90882 1.18164 1.58488 1.82299 1.44930 1.09107 1.78258 1.05088 1.19174 0.99529 0.86560 0.78284 0.93786 1.21230 1.02178 1.42108 0.94118 0.88681 1.26080 0.99160 0.95438 0.98636 1.70562 1.27010 1.42084 1.11436 0.85089 0.77751 0.78286 0.77731 1.20054 1.20776 1.17680 1.23476 0.72382 0.90947 0.77895 1.93102 1.61840 1.86437 1.78858 1.93362 1.91138 1.95193 1.33585 1.92968 1.51172 1.78253 1.96336 1.21250 0.77629 0.90736 0.83291 1.90801 1.52379 1.64976 1.38007 0.90386 0.96160 0.90311 0.93288 0.86747 0.88237 0.89263 0.91312 0.85272 0.88630 0.88033 0.74883 0.75459 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 10.23 71.98 0.74 -2.38 16 2 C 0.10 2.01 5.94 86.38 0.51 2.53 16 3 N -0.60 -12.54 2.81 -826.63 -2.32 -14.86 16 4 C 0.10 0.94 6.33 86.50 0.55 1.49 16 5 C -0.13 -0.96 6.00 30.66 0.18 -0.78 16 6 C -0.12 -1.45 5.52 30.71 0.17 -1.28 16 7 C 0.15 4.15 2.69 44.10 0.12 4.27 16 8 H 0.09 2.94 7.56 -2.39 -0.02 2.93 16 9 N -0.72 -22.33 4.96 -462.12 -2.29 -24.62 16 10 C 0.70 31.07 7.53 179.06 1.35 32.42 16 11 O -0.62 -33.96 14.14 -3.10 -0.04 -34.00 16 12 N -0.72 -31.95 4.99 -461.41 -2.30 -34.25 16 13 C 0.27 14.77 2.21 44.24 0.10 14.87 16 14 H 0.04 2.74 7.58 -2.39 -0.02 2.73 16 15 C -0.56 -29.43 8.46 25.60 0.22 -29.22 16 16 H 0.10 4.53 7.74 -2.91 -0.02 4.51 16 17 C 0.01 0.63 5.20 84.66 0.44 1.07 16 18 N -0.88 -50.75 9.51 21.45 0.20 -50.55 16 19 Si 0.99 41.53 29.54 68.60 2.03 43.55 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 21 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 23 C 0.41 23.46 2.81 71.98 0.20 23.66 16 24 F -0.22 -13.26 15.67 44.97 0.70 -12.55 16 25 F -0.15 -9.22 12.92 44.97 0.58 -8.64 16 26 F -0.21 -11.10 16.94 44.97 0.76 -10.34 16 27 C 0.48 15.29 7.19 87.71 0.63 15.92 16 28 O -0.58 -26.45 14.97 -2.18 -0.03 -26.49 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.38 7.13 -2.39 -0.02 1.37 16 33 H 0.11 1.36 8.01 -2.39 -0.02 1.34 16 34 H 0.10 0.50 8.10 -2.39 -0.02 0.48 16 35 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.07 0.69 8.12 -2.39 -0.02 0.67 16 37 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.10 0.87 8.10 -2.38 -0.02 0.86 16 39 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.41 9.43 8.60 -92.71 -0.80 8.63 16 41 H 0.41 15.01 8.55 -92.71 -0.79 14.21 16 42 H 0.27 14.66 8.31 -92.70 -0.77 13.89 16 Total: -1.00 -87.04 354.54 1.98 -85.07 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -0.51 Total: 25.13 kcal Atomic # 6 Polarization: 57.36 SS G_CDS: 5.20 Total: 62.56 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -6.71 Total: -124.28 kcal Atomic # 8 Polarization: -60.41 SS G_CDS: -0.08 Total: -60.49 kcal Atomic # 9 Polarization: -33.59 SS G_CDS: 2.05 Total: -31.54 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.55 kcal Total: -87.04 1.98 -85.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932889177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.892 kcal (2) G-P(sol) polarization free energy of solvation -87.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds