Wall clock time and date at job start Tue Mar 31 2020 21:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47385 * 2 1 4 4 C 1.45757 * 117.94329 * 89.99659 * 3 2 1 5 5 C 1.52927 * 110.48164 * 160.92718 * 4 3 2 6 6 C 1.53343 * 108.67352 * 50.75510 * 5 4 3 7 7 C 1.53077 * 108.42279 * 292.46450 * 6 5 4 8 8 H 1.09004 * 109.39663 * 288.77536 * 7 6 5 9 9 N 1.46502 * 109.39615 * 169.03534 * 7 6 5 10 10 C 1.34781 * 119.99428 * 155.00666 * 9 7 6 11 11 O 1.21580 * 120.00116 * 359.97438 * 10 9 7 12 12 N 1.34777 * 119.99607 * 180.02562 * 10 9 7 13 13 C 1.46496 * 119.99854 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.47371 * 324.99408 * 13 12 10 15 15 C 1.50702 * 109.47109 * 204.99399 * 13 12 10 16 16 H 1.08002 * 119.99739 * 359.97438 * 15 13 12 17 17 C 1.37878 * 119.99989 * 179.97438 * 15 13 12 18 18 N 1.31517 * 120.00198 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99869 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47373 * 90.00225 * 19 17 15 21 21 H 1.48500 * 109.47160 * 210.00179 * 19 17 15 22 22 H 1.48506 * 109.47190 * 329.99790 * 19 17 15 23 23 C 1.53003 * 109.47358 * 84.99579 * 13 12 10 24 24 F 1.39897 * 109.47074 * 59.99846 * 23 13 12 25 25 F 1.39897 * 109.47527 * 179.97438 * 23 13 12 26 26 F 1.39899 * 109.46996 * 299.99801 * 23 13 12 27 27 C 1.33350 * 117.94441 * 269.99920 * 3 2 1 28 28 O 1.21279 * 118.24909 * 2.19394 * 27 3 2 29 29 H 1.08997 * 109.47321 * 300.00115 * 1 2 3 30 30 H 1.09001 * 109.46851 * 60.00375 * 1 2 3 31 31 H 1.08999 * 109.47274 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46968 * 239.99475 * 2 1 3 33 33 H 1.09004 * 109.46470 * 119.99983 * 2 1 3 34 34 H 1.08995 * 109.30501 * 40.61565 * 4 3 2 35 35 H 1.09002 * 109.29865 * 281.23473 * 4 3 2 36 36 H 1.09003 * 109.59731 * 170.50772 * 5 4 3 37 37 H 1.09002 * 109.60306 * 290.99510 * 5 4 3 38 38 H 1.08996 * 109.67680 * 52.20007 * 6 5 4 39 39 H 1.09006 * 109.67271 * 172.73944 * 6 5 4 40 40 H 0.96994 * 120.00196 * 334.99594 * 9 7 6 41 41 H 0.97003 * 120.00240 * 359.97438 * 12 10 9 42 42 H 0.96995 * 119.99950 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2460 2.0252 1.2876 5 6 3.1697 3.2332 1.1259 6 6 2.6262 4.1194 -0.0013 7 6 2.7705 3.3625 -1.3240 8 1 3.8240 3.3128 -1.5996 9 7 2.0280 4.0677 -2.3716 10 6 2.3833 3.9224 -3.6636 11 8 3.3204 3.2065 -3.9595 12 7 1.7005 4.5716 -4.6274 13 6 2.0871 4.4142 -6.0316 14 1 3.1702 4.3138 -6.1013 15 6 1.6435 5.6238 -6.8134 16 1 1.1250 6.4290 -6.3142 17 6 1.8995 5.7024 -8.1659 18 7 2.5304 4.7215 -8.7739 19 14 1.3502 7.2020 -9.1348 20 1 2.4300 8.2214 -9.1236 21 1 1.0578 6.8063 -10.5359 22 1 0.1261 7.7706 -8.5153 23 6 1.4209 3.1627 -6.6068 24 9 0.0307 3.2916 -6.5175 25 9 1.7896 3.0126 -7.9480 26 9 1.8327 2.0398 -5.8811 27 6 2.2268 1.9703 -1.1780 28 8 1.9635 1.3484 -2.1854 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8900 34 1 2.7037 1.3108 1.9719 35 1 1.2919 2.3538 1.6997 36 1 3.1963 3.8002 2.0564 37 1 4.1742 2.8941 0.8726 38 1 1.5750 4.3420 0.1813 39 1 3.1962 5.0475 -0.0456 40 1 1.2805 4.6390 -2.1355 41 1 0.9531 5.1431 -4.3912 42 1 2.7102 4.7767 -9.7255 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932889178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:03 Heat of formation + Delta-G solvation = -194.695360 kcal Electronic energy + Delta-G solvation = -31431.529329 eV Core-core repulsion = 26611.631657 eV Total energy + Delta-G solvation = -4819.897672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.15597 -45.79583 -45.44628 -40.77190 -38.95363 -36.50154 -35.65137 -34.37473 -33.04271 -32.35816 -30.16663 -29.19067 -27.64985 -24.71583 -24.41796 -23.48148 -22.12445 -21.51254 -20.10620 -18.85380 -18.12991 -17.16724 -16.75419 -16.67372 -16.53348 -16.41182 -16.06113 -15.61037 -15.06394 -14.71260 -14.26981 -14.20182 -13.85858 -13.82283 -13.74454 -13.40858 -13.08060 -12.70750 -12.63029 -12.37408 -12.26043 -12.18796 -12.13559 -11.98089 -11.82481 -11.68507 -11.66171 -11.51410 -11.19982 -11.10427 -11.02472 -10.78038 -10.70833 -10.32572 -9.87087 -9.56973 -9.41252 -8.75881 -8.67091 -8.63771 -8.06167 -6.15758 -4.39382 2.61895 2.90150 3.22504 3.27872 3.30860 3.37178 3.93194 4.24339 4.41183 4.44138 4.49799 4.54605 4.75399 4.91415 4.97962 5.02396 5.04362 5.09633 5.19111 5.25800 5.33724 5.47700 5.53537 5.58619 5.68310 5.85573 5.90360 5.99795 6.04156 6.09171 6.37405 6.42162 6.69865 6.92929 7.31840 7.43198 7.46571 7.69687 7.75553 8.33510 8.57211 8.75254 9.23879 9.37096 10.75832 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.020960 B = 0.003411 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.527245 B = 8206.319810 C = 8935.341773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.105 3.895 3 N -0.611 5.611 4 C 0.115 3.885 5 C -0.132 4.132 6 C -0.129 4.129 7 C 0.161 3.839 8 H 0.117 0.883 9 N -0.738 5.738 10 C 0.705 3.295 11 O -0.569 6.569 12 N -0.726 5.726 13 C 0.264 3.736 14 H 0.084 0.916 15 C -0.551 4.551 16 H 0.076 0.924 17 C 0.064 3.936 18 N -0.839 5.839 19 Si 0.915 3.085 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.271 1.271 23 C 0.415 3.585 24 F -0.212 7.212 25 F -0.140 7.140 26 F -0.210 7.210 27 C 0.492 3.508 28 O -0.508 6.508 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.394 0.606 41 H 0.393 0.607 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.746 -1.586 21.906 22.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.018 4.018 3 N -0.348 5.348 4 C -0.009 4.009 5 C -0.170 4.170 6 C -0.167 4.167 7 C 0.051 3.949 8 H 0.135 0.865 9 N -0.395 5.395 10 C 0.405 3.595 11 O -0.444 6.444 12 N -0.378 5.378 13 C 0.157 3.843 14 H 0.102 0.898 15 C -0.588 4.588 16 H 0.094 0.906 17 C -0.144 4.144 18 N -0.472 5.472 19 Si 0.742 3.258 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.196 1.196 23 C 0.359 3.641 24 F -0.194 7.194 25 F -0.121 7.121 26 F -0.192 7.192 27 C 0.277 3.723 28 O -0.380 6.380 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.228 0.772 41 H 0.226 0.774 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.904 -2.672 20.783 20.973 hybrid contribution -1.262 0.893 -0.306 1.576 sum -2.167 -1.779 20.476 20.667 Atomic orbital electron populations 1.22076 0.95985 1.02057 1.02177 1.21443 0.94542 0.82822 1.03016 1.47500 1.66846 1.14645 1.05764 1.21374 0.99353 0.95105 0.85023 1.21845 0.99789 0.95909 0.99487 1.21956 1.02821 0.99351 0.92621 1.20492 0.98511 0.88173 0.87771 0.86504 1.44834 1.37591 1.52240 1.04832 1.15951 0.82975 0.80359 0.80230 1.90919 1.30800 1.41581 1.81145 1.45200 1.35737 1.50491 1.06418 1.19576 0.97826 0.90946 0.75921 0.89813 1.20876 1.41518 1.02829 0.93613 0.90569 1.25081 0.94863 0.96960 0.97530 1.70424 1.36656 1.28962 1.11180 0.86222 0.79004 0.81638 0.78978 1.20255 1.20847 1.19591 1.23109 0.76213 0.86560 0.78266 1.92972 1.33779 1.96257 1.96358 1.93387 1.90522 1.95673 1.32513 1.93119 1.90194 1.57358 1.78552 1.20891 0.78772 0.89703 0.82887 1.90829 1.48706 1.63195 1.35283 0.92940 0.92047 0.91815 0.89635 0.90969 0.90807 0.91963 0.89253 0.90453 0.90620 0.89636 0.77196 0.77432 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 10.23 37.16 0.38 -1.28 16 2 C 0.10 1.11 5.92 -4.04 -0.02 1.09 16 3 N -0.61 -6.82 2.81 -174.96 -0.49 -7.31 16 4 C 0.11 0.77 6.39 -4.48 -0.03 0.74 16 5 C -0.13 -0.77 6.02 -26.59 -0.16 -0.93 16 6 C -0.13 -1.01 5.51 -26.51 -0.15 -1.16 16 7 C 0.16 2.16 2.70 -69.30 -0.19 1.97 16 8 H 0.12 1.77 7.58 -51.93 -0.39 1.37 16 9 N -0.74 -11.48 4.97 -60.02 -0.30 -11.78 16 10 C 0.70 15.09 7.52 -86.91 -0.65 14.44 16 11 O -0.57 -14.68 14.11 3.49 0.05 -14.63 16 12 N -0.73 -15.80 4.99 -59.81 -0.30 -16.10 16 13 C 0.26 6.91 2.21 -69.08 -0.15 6.76 16 14 H 0.08 2.45 7.58 -51.93 -0.39 2.06 16 15 C -0.55 -14.48 8.46 -34.44 -0.29 -14.77 16 16 H 0.08 1.87 7.74 -52.49 -0.41 1.47 16 17 C 0.06 1.72 5.20 -17.82 -0.09 1.63 16 18 N -0.84 -23.72 9.50 55.43 0.53 -23.19 16 19 Si 0.91 20.49 29.54 -169.99 -5.02 15.47 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 C 0.41 11.46 2.81 37.16 0.10 11.56 16 24 F -0.21 -5.63 16.94 2.25 0.04 -5.59 16 25 F -0.14 -4.09 12.91 2.25 0.03 -4.06 16 26 F -0.21 -6.00 15.68 2.25 0.04 -5.97 16 27 C 0.49 7.60 7.19 -11.87 -0.09 7.51 16 28 O -0.51 -10.77 14.96 3.75 0.06 -10.71 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 1.14 7.20 -51.93 -0.37 0.77 16 33 H 0.07 0.54 7.86 -51.93 -0.41 0.14 16 34 H 0.07 0.37 7.92 -51.93 -0.41 -0.04 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 38 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.39 4.79 8.60 -40.82 -0.35 4.44 16 41 H 0.39 7.30 8.55 -40.82 -0.35 6.95 16 42 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 354.29 15.07 5.34 5.34 Total: -1.00 -36.53 354.29 -6.97 -43.50 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -5.60 Total: 7.47 kcal Atomic # 6 Polarization: 28.89 SS G_CDS: -1.34 Total: 27.56 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -0.56 Total: -58.38 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: 0.11 Total: -25.34 kcal Atomic # 9 Polarization: -15.72 SS G_CDS: 0.10 Total: -15.62 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.53 -6.97 -43.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932889178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.192 kcal (2) G-P(sol) polarization free energy of solvation -36.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds