Wall clock time and date at job start Tue Mar 31 2020 21:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47385 * 2 1 4 4 C 1.45757 * 117.94329 * 89.99659 * 3 2 1 5 5 C 1.52927 * 110.48164 * 160.92718 * 4 3 2 6 6 C 1.53343 * 108.67352 * 50.75510 * 5 4 3 7 7 C 1.53077 * 108.42279 * 292.46450 * 6 5 4 8 8 H 1.09004 * 109.39663 * 288.77536 * 7 6 5 9 9 N 1.46502 * 109.39615 * 169.03534 * 7 6 5 10 10 C 1.34781 * 119.99428 * 155.00666 * 9 7 6 11 11 O 1.21580 * 120.00116 * 359.97438 * 10 9 7 12 12 N 1.34777 * 119.99607 * 180.02562 * 10 9 7 13 13 C 1.46496 * 119.99854 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.47371 * 324.99408 * 13 12 10 15 15 C 1.50702 * 109.47109 * 204.99399 * 13 12 10 16 16 H 1.08002 * 119.99739 * 359.97438 * 15 13 12 17 17 C 1.37878 * 119.99989 * 179.97438 * 15 13 12 18 18 N 1.31517 * 120.00198 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99869 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47373 * 90.00225 * 19 17 15 21 21 H 1.48500 * 109.47160 * 210.00179 * 19 17 15 22 22 H 1.48506 * 109.47190 * 329.99790 * 19 17 15 23 23 C 1.53003 * 109.47358 * 84.99579 * 13 12 10 24 24 F 1.39897 * 109.47074 * 59.99846 * 23 13 12 25 25 F 1.39897 * 109.47527 * 179.97438 * 23 13 12 26 26 F 1.39899 * 109.46996 * 299.99801 * 23 13 12 27 27 C 1.33350 * 117.94441 * 269.99920 * 3 2 1 28 28 O 1.21279 * 118.24909 * 2.19394 * 27 3 2 29 29 H 1.08997 * 109.47321 * 300.00115 * 1 2 3 30 30 H 1.09001 * 109.46851 * 60.00375 * 1 2 3 31 31 H 1.08999 * 109.47274 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46968 * 239.99475 * 2 1 3 33 33 H 1.09004 * 109.46470 * 119.99983 * 2 1 3 34 34 H 1.08995 * 109.30501 * 40.61565 * 4 3 2 35 35 H 1.09002 * 109.29865 * 281.23473 * 4 3 2 36 36 H 1.09003 * 109.59731 * 170.50772 * 5 4 3 37 37 H 1.09002 * 109.60306 * 290.99510 * 5 4 3 38 38 H 1.08996 * 109.67680 * 52.20007 * 6 5 4 39 39 H 1.09006 * 109.67271 * 172.73944 * 6 5 4 40 40 H 0.96994 * 120.00196 * 334.99594 * 9 7 6 41 41 H 0.97003 * 120.00240 * 359.97438 * 12 10 9 42 42 H 0.96995 * 119.99950 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2460 2.0252 1.2876 5 6 3.1697 3.2332 1.1259 6 6 2.6262 4.1194 -0.0013 7 6 2.7705 3.3625 -1.3240 8 1 3.8240 3.3128 -1.5996 9 7 2.0280 4.0677 -2.3716 10 6 2.3833 3.9224 -3.6636 11 8 3.3204 3.2065 -3.9595 12 7 1.7005 4.5716 -4.6274 13 6 2.0871 4.4142 -6.0316 14 1 3.1702 4.3138 -6.1013 15 6 1.6435 5.6238 -6.8134 16 1 1.1250 6.4290 -6.3142 17 6 1.8995 5.7024 -8.1659 18 7 2.5304 4.7215 -8.7739 19 14 1.3502 7.2020 -9.1348 20 1 2.4300 8.2214 -9.1236 21 1 1.0578 6.8063 -10.5359 22 1 0.1261 7.7706 -8.5153 23 6 1.4209 3.1627 -6.6068 24 9 0.0307 3.2916 -6.5175 25 9 1.7896 3.0126 -7.9480 26 9 1.8327 2.0398 -5.8811 27 6 2.2268 1.9703 -1.1780 28 8 1.9635 1.3484 -2.1854 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8900 34 1 2.7037 1.3108 1.9719 35 1 1.2919 2.3538 1.6997 36 1 3.1963 3.8002 2.0564 37 1 4.1742 2.8941 0.8726 38 1 1.5750 4.3420 0.1813 39 1 3.1962 5.0475 -0.0456 40 1 1.2805 4.6390 -2.1355 41 1 0.9531 5.1431 -4.3912 42 1 2.7102 4.7767 -9.7255 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932889178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:00 Heat of formation + Delta-G solvation = -222.733195 kcal Electronic energy + Delta-G solvation = -31432.745141 eV Core-core repulsion = 26611.631657 eV Total energy + Delta-G solvation = -4821.113484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -50.40583 -48.04036 -47.72551 -41.90018 -40.52945 -37.53068 -36.96921 -36.14849 -34.57361 -33.92141 -31.10912 -30.54121 -29.14477 -26.57811 -25.54511 -24.53337 -23.36928 -22.92674 -21.85684 -20.19794 -19.49628 -18.88880 -18.73380 -18.55953 -18.19285 -17.72498 -17.43497 -17.14801 -16.72206 -16.17346 -15.66776 -15.38670 -15.17864 -15.04606 -14.93833 -14.77623 -14.65967 -14.45874 -14.41747 -14.27810 -14.26080 -14.03112 -13.86772 -13.49444 -13.14183 -12.99266 -12.87008 -12.74203 -12.60019 -12.38220 -12.22704 -12.20344 -11.97721 -11.74977 -11.57690 -11.26198 -11.10019 -10.67250 -10.20167 -9.78238 -9.68128 -8.19752 -6.51439 1.35021 1.47500 1.49087 1.60698 1.86251 2.02869 2.27970 2.38526 2.60099 2.95613 3.28870 3.57581 3.68328 3.79595 3.85464 3.89602 4.03332 4.15193 4.18948 4.26205 4.38717 4.46145 4.57526 4.68483 4.80420 4.83472 4.89895 5.01122 5.08686 5.10873 5.23738 5.29518 5.44038 5.44988 5.52813 5.58679 5.66121 6.07895 6.48780 6.54025 7.14761 7.19815 7.25630 7.68920 8.73538 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.020960 B = 0.003411 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.527245 B = 8206.319810 C = 8935.341773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.099 3.901 3 N -0.600 5.600 4 C 0.103 3.897 5 C -0.127 4.127 6 C -0.117 4.117 7 C 0.155 3.845 8 H 0.094 0.906 9 N -0.717 5.717 10 C 0.700 3.300 11 O -0.619 6.619 12 N -0.720 5.720 13 C 0.273 3.727 14 H 0.044 0.956 15 C -0.560 4.560 16 H 0.095 0.905 17 C 0.012 3.988 18 N -0.877 5.877 19 Si 0.988 3.012 20 H -0.268 1.268 21 H -0.286 1.286 22 H -0.257 1.257 23 C 0.410 3.590 24 F -0.206 7.206 25 F -0.151 7.151 26 F -0.220 7.220 27 C 0.484 3.516 28 O -0.582 6.582 29 H 0.077 0.923 30 H 0.021 0.979 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.129 0.871 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.413 0.587 41 H 0.409 0.591 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.932 0.473 25.334 25.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.023 4.023 3 N -0.334 5.334 4 C -0.018 4.018 5 C -0.165 4.165 6 C -0.155 4.155 7 C 0.045 3.955 8 H 0.111 0.889 9 N -0.375 5.375 10 C 0.400 3.600 11 O -0.498 6.498 12 N -0.374 5.374 13 C 0.165 3.835 14 H 0.062 0.938 15 C -0.596 4.596 16 H 0.113 0.887 17 C -0.193 4.193 18 N -0.511 5.511 19 Si 0.811 3.189 20 H -0.193 1.193 21 H -0.211 1.211 22 H -0.181 1.181 23 C 0.353 3.647 24 F -0.187 7.187 25 F -0.133 7.133 26 F -0.202 7.202 27 C 0.271 3.729 28 O -0.460 6.460 29 H 0.096 0.904 30 H 0.040 0.960 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.132 0.868 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.147 0.853 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.120 0.880 40 H 0.251 0.749 41 H 0.245 0.755 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.131 -0.577 24.358 24.457 hybrid contribution -0.878 0.149 -1.244 1.530 sum -3.009 -0.428 23.113 23.312 Atomic orbital electron populations 1.22007 0.95363 1.02757 1.01346 1.21569 0.95063 0.82640 1.03063 1.47617 1.64702 1.14747 1.06297 1.21834 1.01169 0.96010 0.82781 1.21915 0.98923 0.95484 1.00159 1.22000 1.04529 0.99507 0.89499 1.20799 0.96679 0.88251 0.89722 0.88859 1.44631 1.37885 1.51813 1.03136 1.16196 0.82352 0.79640 0.81781 1.90880 1.33013 1.43561 1.82305 1.44933 1.36394 1.51040 1.05047 1.19171 0.95500 0.90582 0.78296 0.93783 1.21226 1.41473 1.02947 0.93988 0.88710 1.26080 0.94606 0.99967 0.98651 1.70563 1.37837 1.31229 1.11462 0.85090 0.79130 0.77699 0.76951 1.19280 1.21126 1.18086 1.23475 0.76572 0.86836 0.77808 1.92965 1.33248 1.96221 1.96307 1.93363 1.90687 1.95770 1.33447 1.93102 1.90360 1.58044 1.78721 1.21251 0.78261 0.90159 0.83267 1.90802 1.52290 1.64936 1.38021 0.90371 0.95979 0.90512 0.93549 0.86845 0.88066 0.89593 0.85263 0.91159 0.88814 0.87997 0.74934 0.75481 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 10.23 71.98 0.74 -2.25 16 2 C 0.10 2.03 5.92 86.38 0.51 2.54 16 3 N -0.60 -12.55 2.81 -826.63 -2.32 -14.88 16 4 C 0.10 0.94 6.39 86.49 0.55 1.49 16 5 C -0.13 -0.94 6.02 30.68 0.18 -0.76 16 6 C -0.12 -1.46 5.51 30.73 0.17 -1.29 16 7 C 0.15 4.14 2.70 44.10 0.12 4.26 16 8 H 0.09 2.95 7.58 -2.38 -0.02 2.93 16 9 N -0.72 -22.38 4.97 -462.08 -2.30 -24.67 16 10 C 0.70 31.08 7.52 179.05 1.35 32.43 16 11 O -0.62 -33.88 14.11 -2.24 -0.03 -33.91 16 12 N -0.72 -32.02 4.99 -461.42 -2.30 -34.32 16 13 C 0.27 14.78 2.21 44.25 0.10 14.88 16 14 H 0.04 2.75 7.58 -2.39 -0.02 2.73 16 15 C -0.56 -29.45 8.46 25.60 0.22 -29.24 16 16 H 0.09 4.53 7.74 -2.91 -0.02 4.50 16 17 C 0.01 0.64 5.20 84.65 0.44 1.08 16 18 N -0.88 -50.75 9.50 21.45 0.20 -50.55 16 19 Si 0.99 41.53 29.54 68.60 2.03 43.56 16 20 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 21 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 23 C 0.41 23.47 2.81 71.98 0.20 23.67 16 24 F -0.21 -11.12 16.94 44.97 0.76 -10.36 16 25 F -0.15 -9.22 12.91 44.97 0.58 -8.64 16 26 F -0.22 -13.25 15.68 44.97 0.70 -12.55 16 27 C 0.48 15.28 7.19 87.71 0.63 15.91 16 28 O -0.58 -26.40 14.96 -1.30 -0.02 -26.42 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.05 1.32 7.20 -2.39 -0.02 1.31 16 33 H 0.11 1.37 7.86 -2.39 -0.02 1.35 16 34 H 0.10 0.47 7.92 -2.39 -0.02 0.45 16 35 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.13 0.08 8.14 -2.39 -0.02 0.07 16 37 H 0.07 0.67 8.12 -2.39 -0.02 0.66 16 38 H 0.09 0.89 8.10 -2.39 -0.02 0.87 16 39 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.41 9.50 8.60 -92.71 -0.80 8.70 16 41 H 0.41 15.06 8.55 -92.71 -0.79 14.26 16 42 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -86.86 354.29 2.00 -84.86 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: -0.51 Total: 25.16 kcal Atomic # 6 Polarization: 57.51 SS G_CDS: 5.21 Total: 62.71 kcal Atomic # 7 Polarization: -117.70 SS G_CDS: -6.72 Total: -124.42 kcal Atomic # 8 Polarization: -60.28 SS G_CDS: -0.05 Total: -60.33 kcal Atomic # 9 Polarization: -33.59 SS G_CDS: 2.05 Total: -31.54 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -86.86 2.00 -84.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932889178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.873 kcal (2) G-P(sol) polarization free energy of solvation -86.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds