Wall clock time and date at job start Tue Mar 31 2020 21:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47208 * 2 1 4 4 C 1.45752 * 117.94183 * 90.00644 * 3 2 1 5 5 C 1.52918 * 110.48818 * 199.07498 * 4 3 2 6 6 C 1.53353 * 108.67310 * 309.24443 * 5 4 3 7 7 C 1.53077 * 108.42315 * 67.52857 * 6 5 4 8 8 H 1.08997 * 109.39860 * 71.14438 * 7 6 5 9 9 N 1.46499 * 109.39776 * 190.97237 * 7 6 5 10 10 C 1.34777 * 119.99655 * 205.00115 * 9 7 6 11 11 O 1.21588 * 120.00217 * 359.97438 * 10 9 7 12 12 N 1.34780 * 119.99789 * 180.02562 * 10 9 7 13 13 C 1.46500 * 119.99699 * 179.97438 * 12 10 9 14 14 H 1.08992 * 109.47277 * 324.99563 * 13 12 10 15 15 C 1.50701 * 109.46897 * 204.99790 * 13 12 10 16 16 H 1.07999 * 119.99926 * 354.17578 * 15 13 12 17 17 C 1.37876 * 120.00153 * 174.17212 * 15 13 12 18 18 N 1.31509 * 119.99885 * 332.36564 * 17 15 13 19 19 Si 1.86804 * 120.00040 * 152.36017 * 17 15 13 20 20 H 1.48494 * 109.47008 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.47171 * 300.00185 * 19 17 15 22 22 H 1.48496 * 109.47080 * 60.00391 * 19 17 15 23 23 C 1.53001 * 109.47293 * 84.99900 * 13 12 10 24 24 F 1.39891 * 109.47245 * 176.78545 * 23 13 12 25 25 F 1.39900 * 109.46944 * 296.78957 * 23 13 12 26 26 F 1.39905 * 109.47048 * 56.78528 * 23 13 12 27 27 C 1.33346 * 117.95070 * 269.99977 * 3 2 1 28 28 O 1.21280 * 118.24675 * 357.77959 * 27 3 2 29 29 H 1.09005 * 109.46793 * 59.99548 * 1 2 3 30 30 H 1.08998 * 109.47096 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46855 * 299.99626 * 1 2 3 32 32 H 1.09001 * 109.46855 * 240.00374 * 2 1 3 33 33 H 1.08994 * 109.47095 * 120.00845 * 2 1 3 34 34 H 1.09001 * 109.30475 * 78.75824 * 4 3 2 35 35 H 1.09001 * 109.13385 * 319.27397 * 4 3 2 36 36 H 1.08997 * 109.60800 * 189.49002 * 5 4 3 37 37 H 1.09002 * 109.73898 * 69.07379 * 5 4 3 38 38 H 1.09003 * 109.67517 * 307.79905 * 6 5 4 39 39 H 1.08998 * 109.70727 * 187.28350 * 6 5 4 40 40 H 0.96995 * 120.00179 * 25.00440 * 9 7 6 41 41 H 0.96995 * 120.00045 * 0.02562 * 12 10 9 42 42 H 0.96998 * 120.00377 * 354.45644 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2462 2.0250 1.2876 5 6 2.2871 3.5451 1.1261 6 6 3.2669 3.8929 -0.0011 7 6 2.6789 3.3950 -1.3239 8 1 1.8274 4.0175 -1.5987 9 7 3.6997 3.4768 -2.3715 10 6 3.3321 3.5873 -3.6634 11 8 2.1532 3.6188 -3.9595 12 7 4.2712 3.6620 -4.6273 13 6 3.8716 3.7816 -6.0316 14 1 2.9591 3.2097 -6.1997 15 6 4.9697 3.2459 -6.9137 16 1 5.9113 2.9429 -6.4801 17 6 4.7725 3.1427 -8.2744 18 7 3.5588 2.9741 -8.7519 19 14 6.2291 3.2423 -9.4396 20 1 5.7534 3.1051 -10.8396 21 1 6.9069 4.5531 -9.2738 22 1 7.1850 2.1483 -9.1317 23 6 3.6202 5.2531 -6.3668 24 9 3.3100 5.3755 -7.7254 25 9 2.5521 5.7303 -5.5996 26 9 4.7690 5.9991 -6.0817 27 6 2.2268 1.9705 -1.1779 28 8 2.0411 1.3212 -2.1853 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.1947 1.6808 1.6998 35 1 1.4388 1.7568 1.9690 36 1 2.6229 4.0029 2.0566 37 1 1.2934 3.9154 0.8741 38 1 4.2245 3.4052 0.1814 39 1 3.4077 4.9729 -0.0455 40 1 4.6402 3.4512 -2.1353 41 1 5.2116 3.6358 -4.3912 42 1 2.8131 2.8420 -8.1458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932889180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:25 Heat of formation + Delta-G solvation = -244.347692 kcal Electronic energy + Delta-G solvation = -31187.971991 eV Core-core repulsion = 26365.921232 eV Total energy + Delta-G solvation = -4822.050758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.78725 -48.31582 -48.26483 -41.96978 -40.63628 -37.58537 -37.15207 -36.31263 -34.71683 -33.95796 -31.12687 -30.52324 -29.11951 -26.50207 -25.63244 -24.63006 -23.56228 -22.81790 -21.99775 -20.35571 -19.85955 -19.30834 -19.03900 -18.93911 -18.36954 -17.88708 -17.62726 -17.21796 -16.27641 -15.94525 -15.67509 -15.40918 -15.35981 -15.23394 -15.18415 -14.96181 -14.77893 -14.71542 -14.69493 -14.52340 -14.48373 -14.40009 -14.30645 -13.45165 -13.29386 -13.11596 -13.02407 -12.85235 -12.52746 -12.52014 -12.25021 -11.98531 -11.92229 -11.82284 -11.48209 -11.38031 -11.18086 -10.47989 -10.31058 -9.89763 -9.70894 -8.89388 -6.59777 1.27689 1.55124 1.61641 1.77882 1.84072 1.87396 2.13692 2.32905 2.50340 2.86434 3.13379 3.42823 3.51965 3.59266 3.62377 3.78069 3.82796 3.99764 4.12142 4.20581 4.31809 4.44561 4.54392 4.59552 4.63191 4.78977 4.82289 4.98504 5.04530 5.05850 5.20205 5.25134 5.31114 5.33651 5.37898 5.54429 5.92265 6.06048 6.26267 6.43906 7.03057 7.15599 7.19417 7.57238 8.43469 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.018901 B = 0.003291 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.067630 B = 8506.515261 C = 9048.425598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.599 5.599 4 C 0.103 3.897 5 C -0.127 4.127 6 C -0.118 4.118 7 C 0.154 3.846 8 H 0.091 0.909 9 N -0.715 5.715 10 C 0.699 3.301 11 O -0.619 6.619 12 N -0.714 5.714 13 C 0.260 3.740 14 H 0.035 0.965 15 C -0.653 4.653 16 H 0.085 0.915 17 C 0.006 3.994 18 N -0.873 5.873 19 Si 1.108 2.892 20 H -0.284 1.284 21 H -0.268 1.268 22 H -0.258 1.258 23 C 0.417 3.583 24 F -0.188 7.188 25 F -0.205 7.205 26 F -0.186 7.186 27 C 0.487 3.513 28 O -0.586 6.586 29 H 0.019 0.981 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.130 0.870 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.415 0.585 41 H 0.411 0.589 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.641 -0.182 26.161 26.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.333 5.333 4 C -0.018 4.018 5 C -0.165 4.165 6 C -0.156 4.156 7 C 0.045 3.955 8 H 0.109 0.891 9 N -0.373 5.373 10 C 0.399 3.601 11 O -0.498 6.498 12 N -0.368 5.368 13 C 0.152 3.848 14 H 0.053 0.947 15 C -0.689 4.689 16 H 0.103 0.897 17 C -0.201 4.201 18 N -0.502 5.502 19 Si 0.927 3.073 20 H -0.209 1.209 21 H -0.193 1.193 22 H -0.183 1.183 23 C 0.361 3.639 24 F -0.170 7.170 25 F -0.187 7.187 26 F -0.168 7.168 27 C 0.273 3.727 28 O -0.465 6.465 29 H 0.038 0.962 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.133 0.867 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.148 0.852 37 H 0.087 0.913 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.252 0.748 41 H 0.247 0.753 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.849 -0.424 23.808 23.884 hybrid contribution -0.411 0.117 1.055 1.138 sum 1.439 -0.307 24.863 24.907 Atomic orbital electron populations 1.22044 0.95537 1.02895 1.01308 1.21561 0.94847 0.82624 1.03345 1.47620 1.64682 1.14697 1.06257 1.21843 1.03866 0.93294 0.82799 1.21908 0.99913 0.94524 1.00170 1.22010 1.00440 1.03698 0.89459 1.20809 0.93091 0.91895 0.89721 0.89110 1.44611 1.10191 1.79456 1.03018 1.16220 0.84869 0.77118 0.81870 1.90886 1.18097 1.58538 1.82291 1.44776 1.09229 1.78228 1.04607 1.19103 0.99514 0.85611 0.80618 0.94734 1.21840 1.00856 1.52044 0.94122 0.89695 1.27414 1.03197 0.90371 0.99161 1.70861 1.01455 1.38280 1.39610 0.83118 0.71906 0.78538 0.73735 1.20921 1.19254 1.18260 1.22926 0.72691 0.94505 0.73775 1.93119 1.92995 1.96760 1.34098 1.93094 1.58599 1.90911 1.76097 1.93019 1.50755 1.79709 1.93311 1.21171 0.77575 0.90586 0.83325 1.90772 1.52614 1.65008 1.38071 0.96154 0.90224 0.90419 0.93152 0.86667 0.89127 0.88184 0.85194 0.91348 0.88523 0.88181 0.74793 0.75252 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 10.23 71.98 0.74 -2.28 16 2 C 0.10 1.93 5.93 86.38 0.51 2.45 16 3 N -0.60 -12.16 2.81 -826.66 -2.32 -14.48 16 4 C 0.10 0.89 6.32 86.49 0.55 1.44 16 5 C -0.13 -0.94 6.02 30.69 0.18 -0.75 16 6 C -0.12 -1.46 5.51 30.74 0.17 -1.29 16 7 C 0.15 4.10 2.70 44.11 0.12 4.22 16 8 H 0.09 2.91 7.58 -2.39 -0.02 2.89 16 9 N -0.72 -22.13 4.97 -462.09 -2.30 -24.42 16 10 C 0.70 30.80 7.60 179.05 1.36 32.16 16 11 O -0.62 -33.59 14.11 -2.23 -0.03 -33.62 16 12 N -0.71 -31.55 4.94 -461.41 -2.28 -33.83 16 13 C 0.26 13.91 2.00 44.25 0.09 14.00 16 14 H 0.03 2.17 6.46 -2.39 -0.02 2.16 16 15 C -0.65 -35.12 8.32 25.60 0.21 -34.91 16 16 H 0.08 4.28 7.86 -2.91 -0.02 4.25 16 17 C 0.01 0.34 4.24 84.66 0.36 0.70 16 18 N -0.87 -52.48 12.33 21.45 0.26 -52.22 16 19 Si 1.11 47.79 29.99 68.60 2.06 49.85 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 22 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 23 C 0.42 21.96 2.82 71.98 0.20 22.17 16 24 F -0.19 -10.61 14.70 44.97 0.66 -9.95 16 25 F -0.21 -10.83 15.77 44.97 0.71 -10.12 16 26 F -0.19 -8.95 16.97 44.97 0.76 -8.19 16 27 C 0.49 15.05 7.19 87.71 0.63 15.68 16 28 O -0.59 -25.96 14.92 -1.27 -0.02 -25.98 16 29 H 0.02 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 1.37 7.13 -2.39 -0.02 1.36 16 33 H 0.12 1.29 8.01 -2.39 -0.02 1.27 16 34 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.10 0.46 8.10 -2.39 -0.02 0.44 16 36 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.07 0.67 8.12 -2.39 -0.02 0.65 16 38 H 0.10 0.87 8.10 -2.39 -0.02 0.85 16 39 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.41 9.37 8.60 -92.71 -0.80 8.57 16 41 H 0.41 15.11 8.54 -92.71 -0.79 14.32 16 42 H 0.26 16.38 7.25 -92.71 -0.67 15.71 16 Total: -1.00 -86.09 356.32 2.22 -83.87 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -0.41 Total: 25.51 kcal Atomic # 6 Polarization: 48.46 SS G_CDS: 5.12 Total: 53.58 kcal Atomic # 7 Polarization: -118.31 SS G_CDS: -6.64 Total: -124.95 kcal Atomic # 8 Polarization: -59.55 SS G_CDS: -0.05 Total: -59.60 kcal Atomic # 9 Polarization: -30.39 SS G_CDS: 2.13 Total: -28.26 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.06 Total: 49.85 kcal Total: -86.09 2.22 -83.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932889180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.476 kcal (2) G-P(sol) polarization free energy of solvation -86.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds