Wall clock time and date at job start Tue Mar 31 2020 20:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.71469 * 2 1 4 4 C 1.52989 * 109.71614 * 239.38679 * 2 1 3 5 5 H 1.09006 * 109.21405 * 166.71485 * 4 2 1 6 6 C 1.52995 * 109.18189 * 47.36365 * 4 2 1 7 7 N 1.45640 * 110.77167 * 287.04783 * 4 2 1 8 8 C 1.33378 * 124.59546 * 338.10729 * 7 4 2 9 9 O 1.21278 * 118.49211 * 184.29561 * 8 7 4 10 10 C 1.50441 * 123.01982 * 4.31367 * 8 7 4 11 11 H 1.09007 * 109.56398 * 227.35587 * 10 8 7 12 12 C 1.52997 * 109.56907 * 107.11791 * 10 8 7 13 13 N 1.47050 * 108.89202 * 347.29270 * 10 8 7 14 14 C 1.34769 * 121.35497 * 222.71883 * 13 10 8 15 15 O 1.21597 * 119.99952 * 179.97438 * 14 13 10 16 16 N 1.34779 * 120.00336 * 359.97438 * 14 13 10 17 17 C 1.46502 * 120.00230 * 180.02562 * 16 14 13 18 18 H 1.08997 * 109.46867 * 324.99495 * 17 16 14 19 19 C 1.50700 * 109.47019 * 205.00094 * 17 16 14 20 20 H 1.08003 * 119.99712 * 271.63438 * 19 17 16 21 21 C 1.37875 * 119.99826 * 91.63159 * 19 17 16 22 22 N 1.31522 * 119.99357 * 172.14566 * 21 19 17 23 23 Si 1.86792 * 120.00533 * 352.14813 * 21 19 17 24 24 H 1.48500 * 109.47166 * 85.12802 * 23 21 19 25 25 H 1.48497 * 109.47503 * 205.12644 * 23 21 19 26 26 H 1.48496 * 109.47300 * 325.12876 * 23 21 19 27 27 C 1.53000 * 109.47003 * 84.99739 * 17 16 14 28 28 F 1.39897 * 109.47182 * 54.31858 * 27 17 16 29 29 F 1.39902 * 109.46472 * 174.31817 * 27 17 16 30 30 F 1.39903 * 109.46949 * 294.31438 * 27 17 16 31 31 H 1.08998 * 109.47297 * 163.24227 * 1 2 3 32 32 H 1.09005 * 109.46900 * 283.23865 * 1 2 3 33 33 H 1.08997 * 109.47195 * 43.23567 * 1 2 3 34 34 H 1.09000 * 109.47539 * 298.73606 * 6 4 2 35 35 H 1.09003 * 109.47357 * 58.73830 * 6 4 2 36 36 H 1.09002 * 109.47243 * 178.73681 * 6 4 2 37 37 H 0.97002 * 117.70174 * 158.12479 * 7 4 2 38 38 H 1.08996 * 109.47107 * 76.78119 * 12 10 8 39 39 H 1.09006 * 109.46838 * 316.78463 * 12 10 8 40 40 H 1.08994 * 109.47187 * 196.78226 * 12 10 8 41 41 H 0.96998 * 119.99638 * 0.02562 * 16 14 13 42 42 H 0.97007 * 119.99719 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8977 1.0261 0.0000 4 6 2.0461 -0.7334 -1.2395 5 1 3.1102 -0.5297 -1.3597 6 6 1.2943 -0.2277 -2.4723 7 7 1.8446 -2.1700 -1.1109 8 6 1.6872 -2.8120 0.0477 9 8 1.6057 -4.0219 0.0322 10 6 1.6056 -2.1041 1.3726 11 1 2.2626 -2.5958 2.0902 12 6 0.1651 -2.1428 1.8865 13 7 2.0270 -0.7068 1.1926 14 6 2.8347 -0.0976 2.0830 15 8 3.1682 1.0588 1.9096 16 7 3.2728 -0.7702 3.1657 17 6 4.1504 -0.1078 4.1340 18 1 4.8149 0.5799 3.6109 19 6 4.9698 -1.1435 4.8599 20 1 4.5851 -1.6041 5.7579 21 6 6.2104 -1.5031 4.3776 22 7 6.9900 -2.2880 5.0888 23 14 6.7838 -0.8755 2.7143 24 1 7.3967 0.4674 2.8765 25 1 7.7880 -1.8131 2.1508 26 1 5.6226 -0.7816 1.7935 27 6 3.3023 0.6701 5.1422 28 9 2.3609 -0.1883 5.7203 29 9 4.1297 1.1952 6.1406 30 9 2.6408 1.7147 4.4875 31 1 -0.3634 -0.9840 -0.2963 32 1 -0.3633 0.2354 1.0004 33 1 -0.3633 0.7487 -0.7039 34 1 0.2308 -0.4391 -2.3614 35 1 1.4425 0.8476 -2.5725 36 1 1.6741 -0.7311 -3.3613 37 1 1.8236 -2.6971 -1.9249 38 1 -0.0507 -3.1326 2.2888 39 1 -0.5193 -1.9270 1.0660 40 1 0.0389 -1.3965 2.6707 41 1 3.0071 -1.6928 3.3039 42 1 7.8627 -2.5414 4.7493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932896750.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:53 Heat of formation + Delta-G solvation = -207.575274 kcal Electronic energy + Delta-G solvation = -32405.642357 eV Core-core repulsion = 27585.186170 eV Total energy + Delta-G solvation = -4820.456187 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.05146 -46.57594 -46.52825 -41.22222 -39.10342 -37.34631 -35.16593 -34.85707 -32.69084 -32.15053 -30.59814 -29.47970 -28.37807 -24.99110 -24.86245 -24.67658 -21.95191 -21.45302 -20.34829 -18.88870 -18.50638 -17.69525 -17.56968 -17.30931 -16.75900 -16.53306 -16.42013 -15.80940 -15.23356 -14.87542 -14.72947 -14.49194 -13.88957 -13.64884 -13.52147 -13.41165 -13.31743 -13.02512 -12.98375 -12.93612 -12.74893 -12.74455 -12.67348 -12.58407 -12.47958 -12.46755 -12.00307 -11.79370 -11.58145 -11.30325 -11.10978 -10.83539 -10.73235 -10.31341 -10.25291 -9.81959 -9.65750 -9.29622 -9.01743 -8.73038 -8.31937 -6.56451 -4.71052 2.47229 2.61389 3.07951 3.13849 3.18552 3.27862 3.50186 3.90853 4.08091 4.10921 4.24322 4.38444 4.71454 4.74488 4.84130 4.90220 4.98814 5.09224 5.16174 5.18356 5.23948 5.30573 5.40333 5.48295 5.55254 5.59237 5.70912 5.72603 5.81626 5.99920 6.06505 6.21257 6.39630 6.63770 6.85067 7.09524 7.13050 7.20091 7.85847 8.03691 8.44088 8.49781 8.99100 9.00671 10.51633 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.012713 B = 0.005256 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.922057 B = 5325.959415 C = 6029.435737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.145 3.855 3 H 0.120 0.880 4 C 0.125 3.875 5 H 0.079 0.921 6 C -0.163 4.163 7 N -0.710 5.710 8 C 0.522 3.478 9 O -0.546 6.546 10 C 0.126 3.874 11 H 0.121 0.879 12 C -0.161 4.161 13 N -0.632 5.632 14 C 0.702 3.298 15 O -0.585 6.585 16 N -0.727 5.727 17 C 0.221 3.779 18 H 0.088 0.912 19 C -0.536 4.536 20 H 0.094 0.906 21 C 0.100 3.900 22 N -0.855 5.855 23 Si 0.873 3.127 24 H -0.267 1.267 25 H -0.282 1.282 26 H -0.256 1.256 27 C 0.439 3.561 28 F -0.193 7.193 29 F -0.181 7.181 30 F -0.194 7.194 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.397 0.603 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.395 0.605 42 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.135 3.030 -12.433 17.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.040 3.960 3 H 0.138 0.862 4 C 0.019 3.981 5 H 0.097 0.903 6 C -0.221 4.221 7 N -0.362 5.362 8 C 0.308 3.692 9 O -0.423 6.423 10 C 0.019 3.981 11 H 0.138 0.862 12 C -0.220 4.220 13 N -0.372 5.372 14 C 0.405 3.595 15 O -0.463 6.463 16 N -0.383 5.383 17 C 0.117 3.883 18 H 0.106 0.894 19 C -0.574 4.574 20 H 0.112 0.888 21 C -0.111 4.111 22 N -0.487 5.487 23 Si 0.698 3.302 24 H -0.193 1.193 25 H -0.208 1.208 26 H -0.179 1.179 27 C 0.383 3.617 28 F -0.174 7.174 29 F -0.163 7.163 30 F -0.176 7.176 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.233 0.767 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.232 0.768 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.702 3.313 -12.246 17.259 hybrid contribution 0.205 -0.282 -0.939 1.001 sum -11.498 3.032 -13.185 17.754 Atomic orbital electron populations 1.22452 0.94528 1.02134 1.03157 1.21339 0.94353 0.98090 0.82210 0.86228 1.21417 1.00643 0.79934 0.96105 0.90266 1.22197 1.01163 1.02410 0.96326 1.45503 1.73295 1.08725 1.08715 1.20230 0.75244 0.87596 0.86152 1.90781 1.50579 1.13761 1.87194 1.21307 0.99348 0.82467 0.95007 0.86152 1.22381 0.93507 1.03799 1.02287 1.47723 1.52354 1.11872 1.25286 1.16285 0.78256 0.84811 0.80197 1.90879 1.62189 1.15771 1.77433 1.47101 1.52382 1.16089 1.22725 1.19914 0.87102 0.95367 0.85869 0.89417 1.20735 1.00890 1.23684 1.12074 0.88807 1.24992 0.95445 0.93456 0.97177 1.69874 1.09521 1.32392 1.36892 0.86877 0.79736 0.79447 0.84118 1.19263 1.20757 1.17944 1.21631 0.79126 0.78085 0.82821 1.93064 1.67558 1.70553 1.86268 1.93115 1.72201 1.87344 1.63603 1.93146 1.82663 1.60801 1.80980 0.91977 0.91196 0.91195 0.91249 0.90436 0.91822 0.76708 0.90568 0.91194 0.90438 0.76774 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 6.34 37.16 0.24 -1.26 16 2 C 0.14 1.70 2.94 -67.51 -0.20 1.50 16 3 H 0.12 1.54 7.06 -51.93 -0.37 1.18 16 4 C 0.13 1.24 3.53 -68.40 -0.24 0.99 16 5 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 6 C -0.16 -1.03 8.69 37.16 0.32 -0.71 16 7 N -0.71 -7.82 4.86 -54.79 -0.27 -8.09 16 8 C 0.52 7.32 6.55 -11.73 -0.08 7.24 16 9 O -0.55 -9.32 17.80 5.56 0.10 -9.22 16 10 C 0.13 1.74 2.88 -68.91 -0.20 1.54 16 11 H 0.12 1.78 5.96 -51.93 -0.31 1.47 16 12 C -0.16 -1.83 8.17 37.16 0.30 -1.52 16 13 N -0.63 -9.45 2.49 -164.70 -0.41 -9.87 16 14 C 0.70 13.50 7.94 -86.92 -0.69 12.81 16 15 O -0.58 -12.82 14.40 5.28 0.08 -12.75 16 16 N -0.73 -14.59 4.56 -59.81 -0.27 -14.86 16 17 C 0.22 5.04 1.47 -69.08 -0.10 4.94 16 18 H 0.09 2.13 5.45 -51.93 -0.28 1.85 16 19 C -0.54 -13.55 8.51 -34.44 -0.29 -13.85 16 20 H 0.09 2.56 8.01 -52.48 -0.42 2.14 16 21 C 0.10 2.60 5.47 -17.82 -0.10 2.50 16 22 N -0.85 -23.44 13.96 55.43 0.77 -22.66 16 23 Si 0.87 20.22 26.85 -169.99 -4.56 15.66 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.26 -5.91 6.92 56.52 0.39 -5.52 16 27 C 0.44 9.68 2.84 37.16 0.11 9.78 16 28 F -0.19 -4.07 16.94 2.25 0.04 -4.04 16 29 F -0.18 -4.10 16.88 2.25 0.04 -4.06 16 30 F -0.19 -4.23 15.85 2.25 0.04 -4.19 16 31 H 0.06 0.54 5.33 -51.93 -0.28 0.27 16 32 H 0.07 0.71 7.51 -51.93 -0.39 0.32 16 33 H 0.07 0.49 7.49 -51.93 -0.39 0.10 16 34 H 0.07 0.41 6.64 -51.93 -0.34 0.06 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.40 3.76 8.61 -40.82 -0.35 3.41 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.70 5.06 -51.93 -0.26 0.44 16 40 H 0.08 0.90 8.13 -51.93 -0.42 0.48 16 41 H 0.39 7.33 6.23 -40.82 -0.25 7.07 16 42 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 343.41 15.07 5.18 5.18 Total: -1.00 -30.92 343.41 -5.12 -36.03 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -4.91 Total: 8.91 kcal Atomic # 6 Polarization: 24.89 SS G_CDS: -0.93 Total: 23.96 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -0.18 Total: -55.48 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: 0.17 Total: -21.97 kcal Atomic # 9 Polarization: -12.40 SS G_CDS: 0.11 Total: -12.29 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.56 Total: 15.66 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.92 -5.12 -36.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932896750.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.541 kcal (2) G-P(sol) polarization free energy of solvation -30.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds